Python Module Index

g | t


	g
	`galaxy`
	`galaxy.actions`
	`galaxy.actions.library`
	`galaxy.app`
	`galaxy.app_unittest_utils`
	`galaxy.app_unittest_utils.galaxy_mock`
	`galaxy.app_unittest_utils.tools_support`
	`galaxy.auth`
	`galaxy.auth.providers`
	`galaxy.auth.providers.alwaysreject`
	`galaxy.auth.providers.ldap_ad`
	`galaxy.auth.providers.localdb`
	`galaxy.auth.providers.pam_auth`
	`galaxy.auth.util`
	`galaxy.authnz`
	`galaxy.authnz.custos_authnz`
	`galaxy.authnz.managers`
	`galaxy.authnz.psa_authnz`
	`galaxy.celery`
	`galaxy.celery.tasks`
	`galaxy.config`
	`galaxy.config.config_manage`
	`galaxy.config.schema`
	`galaxy.config.script`
	`galaxy.config_watchers`
	`galaxy.datatypes`
	`galaxy.datatypes.annotation`
	`galaxy.datatypes.anvio`
	`galaxy.datatypes.assembly`
	`galaxy.datatypes.binary`
	`galaxy.datatypes.blast`
	`galaxy.datatypes.checkers`
	`galaxy.datatypes.chrominfo`
	`galaxy.datatypes.constructive_solid_geometry`
	`galaxy.datatypes.converters`
	`galaxy.datatypes.converters.bed_to_gff_converter`
	`galaxy.datatypes.converters.fasta_to_len`
	`galaxy.datatypes.converters.fasta_to_tabular_converter`
	`galaxy.datatypes.converters.fastq_to_fqtoc`
	`galaxy.datatypes.converters.fastqsolexa_to_fasta_converter`
	`galaxy.datatypes.converters.fastqsolexa_to_qual_converter`
	`galaxy.datatypes.converters.gff_to_bed_converter`
	`galaxy.datatypes.converters.gff_to_interval_index_converter`
	`galaxy.datatypes.converters.interval_to_bed_converter`
	`galaxy.datatypes.converters.interval_to_bedstrict_converter`
	`galaxy.datatypes.converters.interval_to_fli`
	`galaxy.datatypes.converters.interval_to_interval_index_converter`
	`galaxy.datatypes.converters.lped_to_fped_converter`
	`galaxy.datatypes.converters.lped_to_pbed_converter`
	`galaxy.datatypes.converters.maf_to_fasta_converter`
	`galaxy.datatypes.converters.maf_to_interval_converter`
	`galaxy.datatypes.converters.parquet_to_csv_converter`
	`galaxy.datatypes.converters.pbed_ldreduced_converter`
	`galaxy.datatypes.converters.pbed_to_lped_converter`
	`galaxy.datatypes.converters.picard_interval_list_to_bed6_converter`
	`galaxy.datatypes.converters.pileup_to_interval_index_converter`
	`galaxy.datatypes.converters.ref_to_seq_taxonomy_converter`
	`galaxy.datatypes.converters.tabular_csv`
	`galaxy.datatypes.converters.wiggle_to_simple_converter`
	`galaxy.datatypes.coverage`
	`galaxy.datatypes.data`
	`galaxy.datatypes.dataproviders`
	`galaxy.datatypes.dataproviders.base`
	`galaxy.datatypes.dataproviders.chunk`
	`galaxy.datatypes.dataproviders.column`
	`galaxy.datatypes.dataproviders.dataset`
	`galaxy.datatypes.dataproviders.decorators`
	`galaxy.datatypes.dataproviders.exceptions`
	`galaxy.datatypes.dataproviders.external`
	`galaxy.datatypes.dataproviders.hierarchy`
	`galaxy.datatypes.dataproviders.line`
	`galaxy.datatypes.display_applications`
	`galaxy.datatypes.display_applications.application`
	`galaxy.datatypes.display_applications.parameters`
	`galaxy.datatypes.display_applications.util`
	`galaxy.datatypes.flow`
	`galaxy.datatypes.genetics`
	`galaxy.datatypes.gis`
	`galaxy.datatypes.goldenpath`
	`galaxy.datatypes.graph`
	`galaxy.datatypes.hdf5`
	`galaxy.datatypes.images`
	`galaxy.datatypes.interval`
	`galaxy.datatypes.isa`
	`galaxy.datatypes.media`
	`galaxy.datatypes.metacyto`
	`galaxy.datatypes.metadata`
	`galaxy.datatypes.microarrays`
	`galaxy.datatypes.molecules`
	`galaxy.datatypes.mothur`
	`galaxy.datatypes.msa`
	`galaxy.datatypes.neo4j`
	`galaxy.datatypes.ngsindex`
	`galaxy.datatypes.phylip`
	`galaxy.datatypes.plant_tribes`
	`galaxy.datatypes.proteomics`
	`galaxy.datatypes.qiime2`
	`galaxy.datatypes.qualityscore`
	`galaxy.datatypes.registry`
	`galaxy.datatypes.sequence`
	`galaxy.datatypes.sniff`
	`galaxy.datatypes.spaln`
	`galaxy.datatypes.speech`
	`galaxy.datatypes.tabular`
	`galaxy.datatypes.text`
	`galaxy.datatypes.tracks`
	`galaxy.datatypes.triples`
	`galaxy.datatypes.upload_util`
	`galaxy.datatypes.util`
	`galaxy.datatypes.util.generic_util`
	`galaxy.datatypes.util.gff_util`
	`galaxy.datatypes.util.maf_utilities`
	`galaxy.datatypes.xml`
	`galaxy.dependencies`
	`galaxy.di`
	`galaxy.exceptions`
	`galaxy.exceptions.error_codes`
	`galaxy.files`
	`galaxy.files.sources`
	`galaxy.files.sources.anvil`
	`galaxy.files.sources.basespace`
	`galaxy.files.sources.dropbox`
	`galaxy.files.sources.ftp`
	`galaxy.files.sources.galaxy`
	`galaxy.files.sources.googlecloudstorage`
	`galaxy.files.sources.googledrive`
	`galaxy.files.sources.onedata`
	`galaxy.files.sources.posix`
	`galaxy.files.sources.s3fs`
	`galaxy.files.sources.ssh`
	`galaxy.files.sources.webdav`
	`galaxy.files.unittest_utils`
	`galaxy.files.uris`
	`galaxy.forms`
	`galaxy.forms.forms`
	`galaxy.job_execution`
	`galaxy.job_execution.actions`
	`galaxy.job_execution.actions.post`
	`galaxy.job_execution.compute_environment`
	`galaxy.job_execution.datasets`
	`galaxy.job_execution.output_collect`
	`galaxy.job_execution.ports`
	`galaxy.job_execution.ports.view`
	`galaxy.job_execution.setup`
	`galaxy.job_metrics`
	`galaxy.job_metrics.formatting`
	`galaxy.job_metrics.instrumenters`
	`galaxy.job_metrics.instrumenters.cgroup`
	`galaxy.job_metrics.instrumenters.core`
	`galaxy.job_metrics.instrumenters.cpuinfo`
	`galaxy.job_metrics.instrumenters.env`
	`galaxy.job_metrics.instrumenters.hostname`
	`galaxy.job_metrics.instrumenters.meminfo`
	`galaxy.job_metrics.instrumenters.uname`
	`galaxy.job_metrics.safety`
	`galaxy.jobs`
	`galaxy.jobs.command_factory`
	`galaxy.jobs.dynamic_tool_destination`
	`galaxy.jobs.handler`
	`galaxy.jobs.manager`
	`galaxy.jobs.mapper`
	`galaxy.jobs.rule_helper`
	`galaxy.jobs.rules`
	`galaxy.jobs.runners`
	`galaxy.jobs.runners.chronos`
	`galaxy.jobs.runners.cli`
	`galaxy.jobs.runners.condor`
	`galaxy.jobs.runners.drmaa`
	`galaxy.jobs.runners.godocker`
	`galaxy.jobs.runners.kubernetes`
	`galaxy.jobs.runners.local`
	`galaxy.jobs.runners.pbs`
	`galaxy.jobs.runners.pulsar`
	`galaxy.jobs.runners.slurm`
	`galaxy.jobs.runners.state_handler_factory`
	`galaxy.jobs.runners.state_handlers`
	`galaxy.jobs.runners.state_handlers.resubmit`
	`galaxy.jobs.runners.tasks`
	`galaxy.jobs.runners.univa`
	`galaxy.jobs.runners.util`
	`galaxy.jobs.runners.util.cli`
	`galaxy.jobs.runners.util.cli.factory`
	`galaxy.jobs.runners.util.cli.job`
	`galaxy.jobs.runners.util.cli.job.lsf`
	`galaxy.jobs.runners.util.cli.job.pbs`
	`galaxy.jobs.runners.util.cli.job.slurm`
	`galaxy.jobs.runners.util.cli.job.slurm_torque`
	`galaxy.jobs.runners.util.cli.job.torque`
	`galaxy.jobs.runners.util.cli.shell`
	`galaxy.jobs.runners.util.cli.shell.local`
	`galaxy.jobs.runners.util.cli.shell.rsh`
	`galaxy.jobs.runners.util.condor`
	`galaxy.jobs.runners.util.env`
	`galaxy.jobs.runners.util.external`
	`galaxy.jobs.runners.util.job_script`
	`galaxy.jobs.runners.util.kill`
	`galaxy.jobs.runners.util.process_groups`
	`galaxy.jobs.runners.util.pykube_util`
	`galaxy.jobs.runners.util.sudo`
	`galaxy.jobs.splitters`
	`galaxy.jobs.splitters.basic`
	`galaxy.jobs.splitters.multi`
	`galaxy.jobs.stock_rules`
	`galaxy.main`
	`galaxy.main_config`
	`galaxy.managers`
	`galaxy.managers.annotatable`
	`galaxy.managers.api_keys`
	`galaxy.managers.base`
	`galaxy.managers.citations`
	`galaxy.managers.collections`
	`galaxy.managers.collections_util`
	`galaxy.managers.configuration`
	`galaxy.managers.context`
	`galaxy.managers.datasets`
	`galaxy.managers.datatypes`
	`galaxy.managers.deletable`
	`galaxy.managers.display_applications`
	`galaxy.managers.executables`
	`galaxy.managers.folders`
	`galaxy.managers.genomes`
	`galaxy.managers.group_roles`
	`galaxy.managers.group_users`
	`galaxy.managers.groups`
	`galaxy.managers.hdas`
	`galaxy.managers.hdcas`
	`galaxy.managers.histories`
	`galaxy.managers.history_contents`
	`galaxy.managers.interactivetool`
	`galaxy.managers.jobs`
	`galaxy.managers.lddas`
	`galaxy.managers.libraries`
	`galaxy.managers.library_datasets`
	`galaxy.managers.licenses`
	`galaxy.managers.markdown_parse`
	`galaxy.managers.markdown_util`
	`galaxy.managers.metrics`
	`galaxy.managers.model_stores`
	`galaxy.managers.pages`
	`galaxy.managers.quotas`
	`galaxy.managers.ratable`
	`galaxy.managers.rbac_secured`
	`galaxy.managers.remote_files`
	`galaxy.managers.roles`
	`galaxy.managers.secured`
	`galaxy.managers.session`
	`galaxy.managers.sharable`
	`galaxy.managers.taggable`
	`galaxy.managers.tags`
	`galaxy.managers.tool_data`
	`galaxy.managers.tools`
	`galaxy.managers.users`
	`galaxy.managers.visualizations`
	`galaxy.managers.workflows`
	`galaxy.metadata`
	`galaxy.metadata.set_metadata`
	`galaxy.model`
	`galaxy.model.base`
	`galaxy.model.custom_types`
	`galaxy.model.database_heartbeat`
	`galaxy.model.database_utils`
	`galaxy.model.dataset_collections`
	`galaxy.model.dataset_collections.builder`
	`galaxy.model.dataset_collections.matching`
	`galaxy.model.dataset_collections.registry`
	`galaxy.model.dataset_collections.structure`
	`galaxy.model.dataset_collections.subcollections`
	`galaxy.model.dataset_collections.type_description`
	`galaxy.model.dataset_collections.types`
	`galaxy.model.dataset_collections.types.list`
	`galaxy.model.dataset_collections.types.paired`
	`galaxy.model.deferred`
	`galaxy.model.index_filter_util`
	`galaxy.model.item_attrs`
	`galaxy.model.mapping`
	`galaxy.model.metadata`
	`galaxy.model.migrations`
	`galaxy.model.migrations.scripts`
	`galaxy.model.migrations.util`
	`galaxy.model.none_like`
	`galaxy.model.orm`
	`galaxy.model.orm.engine_factory`
	`galaxy.model.orm.now`
	`galaxy.model.orm.scripts`
	`galaxy.model.orm.util`
	`galaxy.model.scoped_session`
	`galaxy.model.security`
	`galaxy.model.store`
	`galaxy.model.store.build_objects`
	`galaxy.model.store.discover`
	`galaxy.model.store.load_objects`
	`galaxy.model.tags`
	`galaxy.model.tool_shed_install`
	`galaxy.model.tool_shed_install.mapping`
	`galaxy.model.triggers`
	`galaxy.model.triggers.history_update_time_field`
	`galaxy.model.triggers.update_audit_table`
	`galaxy.model.triggers.utils`
	`galaxy.model.unittest_utils`
	`galaxy.model.unittest_utils.data_app`
	`galaxy.model.unittest_utils.store_fixtures`
	`galaxy.objectstore`
	`galaxy.objectstore.azure_blob`
	`galaxy.objectstore.cloud`
	`galaxy.objectstore.irods`
	`galaxy.objectstore.pithos`
	`galaxy.objectstore.pulsar`
	`galaxy.objectstore.s3`
	`galaxy.objectstore.s3_multipart_upload`
	`galaxy.objectstore.unittest_utils`
	`galaxy.queue_worker`
	`galaxy.queues`
	`galaxy.quota`
	`galaxy.schema`
	`galaxy.schema.fetch_data`
	`galaxy.schema.fields`
	`galaxy.schema.remote_files`
	`galaxy.schema.schema`
	`galaxy.schema.tasks`
	`galaxy.schema.types`
	`galaxy.security`
	`galaxy.security.idencoding`
	`galaxy.security.object_wrapper`
	`galaxy.security.passwords`
	`galaxy.security.ssh_util`
	`galaxy.security.validate_user_input`
	`galaxy.security.vault`
	`galaxy.selenium`
	`galaxy.selenium.cli`
	`galaxy.selenium.context`
	`galaxy.selenium.driver_factory`
	`galaxy.selenium.has_driver`
	`galaxy.selenium.jupyter_context`
	`galaxy.selenium.navigates_galaxy`
	`galaxy.selenium.scripts`
	`galaxy.selenium.scripts.dump_tour`
	`galaxy.selenium.sizzle`
	`galaxy.selenium.smart_components`
	`galaxy.selenium.toolbox`
	`galaxy.selenium.toolbox.filters`
	`galaxy.structured_app`
	`galaxy.tool_shed`
	`galaxy.tool_shed.galaxy_install`
	`galaxy.tool_shed.galaxy_install.install_manager`
	`galaxy.tool_shed.galaxy_install.installed_repository_manager`
	`galaxy.tool_shed.galaxy_install.metadata`
	`galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager`
	`galaxy.tool_shed.galaxy_install.repository_dependencies`
	`galaxy.tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager`
	`galaxy.tool_shed.galaxy_install.tools`
	`galaxy.tool_shed.galaxy_install.tools.data_manager`
	`galaxy.tool_shed.galaxy_install.tools.tool_panel_manager`
	`galaxy.tool_shed.galaxy_install.update_repository_manager`
	`galaxy.tool_shed.metadata`
	`galaxy.tool_shed.metadata.metadata_generator`
	`galaxy.tool_shed.repository_type`
	`galaxy.tool_shed.tools`
	`galaxy.tool_shed.tools.data_table_manager`
	`galaxy.tool_shed.tools.tool_validator`
	`galaxy.tool_shed.util`
	`galaxy.tool_shed.util.basic_util`
	`galaxy.tool_shed.util.container_util`
	`galaxy.tool_shed.util.hg_util`
	`galaxy.tool_shed.util.metadata_util`
	`galaxy.tool_shed.util.repository_util`
	`galaxy.tool_shed.util.shed_util_common`
	`galaxy.tool_shed.util.tool_dependency_util`
	`galaxy.tool_shed.util.tool_util`
	`galaxy.tool_util`
	`galaxy.tool_util.biotools`
	`galaxy.tool_util.biotools.interface`
	`galaxy.tool_util.biotools.source`
	`galaxy.tool_util.client`
	`galaxy.tool_util.client.staging`
	`galaxy.tool_util.cwl`
	`galaxy.tool_util.cwl.cwltool_deps`
	`galaxy.tool_util.cwl.parser`
	`galaxy.tool_util.cwl.representation`
	`galaxy.tool_util.cwl.runnable`
	`galaxy.tool_util.cwl.runtime_actions`
	`galaxy.tool_util.cwl.schema`
	`galaxy.tool_util.cwl.util`
	`galaxy.tool_util.deps`
	`galaxy.tool_util.deps.brew_exts`
	`galaxy.tool_util.deps.brew_util`
	`galaxy.tool_util.deps.commands`
	`galaxy.tool_util.deps.conda_compat`
	`galaxy.tool_util.deps.conda_util`
	`galaxy.tool_util.deps.container_classes`
	`galaxy.tool_util.deps.container_resolvers`
	`galaxy.tool_util.deps.container_resolvers.explicit`
	`galaxy.tool_util.deps.container_resolvers.mulled`
	`galaxy.tool_util.deps.container_volumes`
	`galaxy.tool_util.deps.containers`
	`galaxy.tool_util.deps.dependencies`
	`galaxy.tool_util.deps.docker_util`
	`galaxy.tool_util.deps.dockerfiles`
	`galaxy.tool_util.deps.installable`
	`galaxy.tool_util.deps.mulled`
	`galaxy.tool_util.deps.mulled.get_tests`
	`galaxy.tool_util.deps.mulled.mulled_build`
	`galaxy.tool_util.deps.mulled.mulled_build_channel`
	`galaxy.tool_util.deps.mulled.mulled_build_files`
	`galaxy.tool_util.deps.mulled.mulled_build_tool`
	`galaxy.tool_util.deps.mulled.mulled_hash`
	`galaxy.tool_util.deps.mulled.mulled_list`
	`galaxy.tool_util.deps.mulled.mulled_search`
	`galaxy.tool_util.deps.mulled.mulled_update_singularity_containers`
	`galaxy.tool_util.deps.mulled.util`
	`galaxy.tool_util.deps.requirements`
	`galaxy.tool_util.deps.resolvers`
	`galaxy.tool_util.deps.resolvers.brewed_tool_shed_packages`
	`galaxy.tool_util.deps.resolvers.conda`
	`galaxy.tool_util.deps.resolvers.galaxy_packages`
	`galaxy.tool_util.deps.resolvers.homebrew`
	`galaxy.tool_util.deps.resolvers.lmod`
	`galaxy.tool_util.deps.resolvers.modules`
	`galaxy.tool_util.deps.resolvers.resolver_mixins`
	`galaxy.tool_util.deps.resolvers.tool_shed_packages`
	`galaxy.tool_util.deps.resolvers.unlinked_tool_shed_packages`
	`galaxy.tool_util.deps.singularity_util`
	`galaxy.tool_util.deps.views`
	`galaxy.tool_util.edam_util`
	`galaxy.tool_util.fetcher`
	`galaxy.tool_util.lint`
	`galaxy.tool_util.linters`
	`galaxy.tool_util.linters.citations`
	`galaxy.tool_util.linters.command`
	`galaxy.tool_util.linters.cwl`
	`galaxy.tool_util.linters.general`
	`galaxy.tool_util.linters.help`
	`galaxy.tool_util.linters.inputs`
	`galaxy.tool_util.linters.stdio`
	`galaxy.tool_util.linters.tests`
	`galaxy.tool_util.linters.xml_order`
	`galaxy.tool_util.loader`
	`galaxy.tool_util.loader_directory`
	`galaxy.tool_util.locations`
	`galaxy.tool_util.locations.dockstore`
	`galaxy.tool_util.locations.file`
	`galaxy.tool_util.locations.http`
	`galaxy.tool_util.ontologies`
	`galaxy.tool_util.ontologies.ontology_data`
	`galaxy.tool_util.output_checker`
	`galaxy.tool_util.parser`
	`galaxy.tool_util.parser.cwl`
	`galaxy.tool_util.parser.factory`
	`galaxy.tool_util.parser.interface`
	`galaxy.tool_util.parser.output_actions`
	`galaxy.tool_util.parser.output_collection_def`
	`galaxy.tool_util.parser.output_objects`
	`galaxy.tool_util.parser.stdio`
	`galaxy.tool_util.parser.util`
	`galaxy.tool_util.parser.xml`
	`galaxy.tool_util.parser.yaml`
	`galaxy.tool_util.provided_metadata`
	`galaxy.tool_util.toolbox`
	`galaxy.tool_util.toolbox.base`
	`galaxy.tool_util.toolbox.filters`
	`galaxy.tool_util.toolbox.integrated_panel`
	`galaxy.tool_util.toolbox.lineages`
	`galaxy.tool_util.toolbox.lineages.factory`
	`galaxy.tool_util.toolbox.lineages.interface`
	`galaxy.tool_util.toolbox.panel`
	`galaxy.tool_util.toolbox.parser`
	`galaxy.tool_util.toolbox.views`
	`galaxy.tool_util.toolbox.views.definitions`
	`galaxy.tool_util.toolbox.views.edam`
	`galaxy.tool_util.toolbox.views.interface`
	`galaxy.tool_util.toolbox.views.sources`
	`galaxy.tool_util.toolbox.views.static`
	`galaxy.tool_util.toolbox.watcher`
	`galaxy.tool_util.unittest_utils`
	`galaxy.tool_util.unittest_utils.sample_data`
	`galaxy.tool_util.verify`
	`galaxy.tool_util.verify.asserts`
	`galaxy.tool_util.verify.asserts.archive`
	`galaxy.tool_util.verify.asserts.hdf5`
	`galaxy.tool_util.verify.asserts.size`
	`galaxy.tool_util.verify.asserts.tabular`
	`galaxy.tool_util.verify.asserts.text`
	`galaxy.tool_util.verify.asserts.xml`
	`galaxy.tool_util.verify.interactor`
	`galaxy.tool_util.verify.script`
	`galaxy.tool_util.verify.test_data`
	`galaxy.tool_util.verify.wait`
	`galaxy.tools`
	`galaxy.tools.actions`
	`galaxy.tools.actions.data_manager`
	`galaxy.tools.actions.data_source`
	`galaxy.tools.actions.history_imp_exp`
	`galaxy.tools.actions.metadata`
	`galaxy.tools.actions.model_operations`
	`galaxy.tools.actions.upload`
	`galaxy.tools.actions.upload_common`
	`galaxy.tools.biotools`
	`galaxy.tools.cache`
	`galaxy.tools.data`
	`galaxy.tools.data_fetch`
	`galaxy.tools.data_manager`
	`galaxy.tools.data_manager.manager`
	`galaxy.tools.error_reports`
	`galaxy.tools.error_reports.plugins`
	`galaxy.tools.error_reports.plugins.base_git`
	`galaxy.tools.error_reports.plugins.email`
	`galaxy.tools.error_reports.plugins.github`
	`galaxy.tools.error_reports.plugins.gitlab`
	`galaxy.tools.error_reports.plugins.influxdb`
	`galaxy.tools.error_reports.plugins.json`
	`galaxy.tools.error_reports.plugins.sentry`
	`galaxy.tools.errors`
	`galaxy.tools.evaluation`
	`galaxy.tools.exception_handling`
	`galaxy.tools.execute`
	`galaxy.tools.expressions`
	`galaxy.tools.expressions.evaluation`
	`galaxy.tools.expressions.script`
	`galaxy.tools.expressions.util`
	`galaxy.tools.filters`
	`galaxy.tools.imp_exp`
	`galaxy.tools.imp_exp.export_history`
	`galaxy.tools.imp_exp.unpack_tar_gz_archive`
	`galaxy.tools.parameters`
	`galaxy.tools.parameters.basic`
	`galaxy.tools.parameters.dataset_matcher`
	`galaxy.tools.parameters.dynamic_options`
	`galaxy.tools.parameters.grouping`
	`galaxy.tools.parameters.history_query`
	`galaxy.tools.parameters.input_translation`
	`galaxy.tools.parameters.meta`
	`galaxy.tools.parameters.sanitize`
	`galaxy.tools.parameters.validation`
	`galaxy.tools.parameters.wrapped`
	`galaxy.tools.parameters.wrapped_json`
	`galaxy.tools.recommendations`
	`galaxy.tools.remote_tool_eval`
	`galaxy.tools.repositories`
	`galaxy.tools.search`
	`galaxy.tools.special_tools`
	`galaxy.tools.util`
	`galaxy.tools.util.galaxyops`
	`galaxy.tools.util.maf_utilities`
	`galaxy.tools.wrappers`
	`galaxy.tours`
	`galaxy.tours.validate`
	`galaxy.util`
	`galaxy.util.aliaspickler`
	`galaxy.util.bool_expressions`
	`galaxy.util.bunch`
	`galaxy.util.bytesize`
	`galaxy.util.checkers`
	`galaxy.util.commands`
	`galaxy.util.compression_utils`
	`galaxy.util.custom_logging`
	`galaxy.util.custom_logging.fluent_log`
	`galaxy.util.dictifiable`
	`galaxy.util.dynamic`
	`galaxy.util.expressions`
	`galaxy.util.facts`
	`galaxy.util.filelock`
	`galaxy.util.form_builder`
	`galaxy.util.hash_util`
	`galaxy.util.heartbeat`
	`galaxy.util.image_util`
	`galaxy.util.inflection`
	`galaxy.util.json`
	`galaxy.util.jstree`
	`galaxy.util.lazy_process`
	`galaxy.util.monitors`
	`galaxy.util.odict`
	`galaxy.util.oset`
	`galaxy.util.path`
	`galaxy.util.path.ntpath`
	`galaxy.util.path.posixpath`
	`galaxy.util.permutations`
	`galaxy.util.plugin_config`
	`galaxy.util.properties`
	`galaxy.util.renamed_temporary_file`
	`galaxy.util.resources`
	`galaxy.util.rules_dsl`
	`galaxy.util.sanitize_html`
	`galaxy.util.script`
	`galaxy.util.search`
	`galaxy.util.simplegraph`
	`galaxy.util.sleeper`
	`galaxy.util.sockets`
	`galaxy.util.specs`
	`galaxy.util.sqlite`
	`galaxy.util.submodules`
	`galaxy.util.task`
	`galaxy.util.template`
	`galaxy.util.tool_shed`
	`galaxy.util.tool_shed.common_util`
	`galaxy.util.tool_shed.encoding_util`
	`galaxy.util.tool_shed.xml_util`
	`galaxy.util.tool_version`
	`galaxy.util.topsort`
	`galaxy.util.ucsc`
	`galaxy.util.validation`
	`galaxy.util.watcher`
	`galaxy.util.xml_macros`
	`galaxy.util.yaml_util`
	`galaxy.util.zipstream`
	`galaxy.version`
	`galaxy.visualization`
	`galaxy.visualization.data_providers`
	`galaxy.visualization.data_providers.basic`
	`galaxy.visualization.data_providers.cigar`
	`galaxy.visualization.data_providers.genome`
	`galaxy.visualization.data_providers.phyloviz`
	`galaxy.visualization.data_providers.phyloviz.baseparser`
	`galaxy.visualization.data_providers.phyloviz.newickparser`
	`galaxy.visualization.data_providers.phyloviz.nexusparser`
	`galaxy.visualization.data_providers.phyloviz.phyloxmlparser`
	`galaxy.visualization.data_providers.registry`
	`galaxy.visualization.genome`
	`galaxy.visualization.genomes`
	`galaxy.visualization.plugins`
	`galaxy.visualization.plugins.config_parser`
	`galaxy.visualization.plugins.plugin`
	`galaxy.visualization.plugins.registry`
	`galaxy.visualization.plugins.resource_parser`
	`galaxy.visualization.plugins.utils`
	`galaxy.visualization.tracks`
	`galaxy.web`
	`galaxy.web.form_builder`
	`galaxy.web.framework`
	`galaxy.web.framework.base`
	`galaxy.web.framework.decorators`
	`galaxy.web.framework.helpers`
	`galaxy.web.framework.helpers.grids`
	`galaxy.web.framework.helpers.tags`
	`galaxy.web.framework.middleware`
	`galaxy.web.framework.middleware.error`
	`galaxy.web.framework.middleware.profile`
	`galaxy.web.framework.middleware.remoteuser`
	`galaxy.web.framework.middleware.request_id`
	`galaxy.web.framework.middleware.sqldebug`
	`galaxy.web.framework.middleware.static`
	`galaxy.web.framework.middleware.statsd`
	`galaxy.web.framework.middleware.translogger`
	`galaxy.web.framework.middleware.xforwardedhost`
	`galaxy.web.legacy_framework`
	`galaxy.web.legacy_framework.grids`
	`galaxy.web.proxy`
	`galaxy.web.statsd_client`
	`galaxy.web_stack`
	`galaxy.web_stack.gunicorn_config`
	`galaxy.web_stack.handlers`
	`galaxy.web_stack.message`
	`galaxy.web_stack.transport`
	`galaxy.webapps`
	`galaxy.webapps.base`
	`galaxy.webapps.base.api`
	`galaxy.webapps.base.controller`
	`galaxy.webapps.base.webapp`
	`galaxy.webapps.galaxy`
	`galaxy.webapps.galaxy.api`
	`galaxy.webapps.galaxy.api.annotations`
	`galaxy.webapps.galaxy.api.authenticate`
	`galaxy.webapps.galaxy.api.common`
	`galaxy.webapps.galaxy.api.configuration`
	`galaxy.webapps.galaxy.api.container_resolution`
	`galaxy.webapps.galaxy.api.dataset_collections`
	`galaxy.webapps.galaxy.api.datasets`
	`galaxy.webapps.galaxy.api.datatypes`
	`galaxy.webapps.galaxy.api.display_applications`
	`galaxy.webapps.galaxy.api.dynamic_tools`
	`galaxy.webapps.galaxy.api.extended_metadata`
	`galaxy.webapps.galaxy.api.folder_contents`
	`galaxy.webapps.galaxy.api.folders`
	`galaxy.webapps.galaxy.api.forms`
	`galaxy.webapps.galaxy.api.genomes`
	`galaxy.webapps.galaxy.api.group_roles`
	`galaxy.webapps.galaxy.api.group_users`
	`galaxy.webapps.galaxy.api.groups`
	`galaxy.webapps.galaxy.api.histories`
	`galaxy.webapps.galaxy.api.item_tags`
	`galaxy.webapps.galaxy.api.job_files`
	`galaxy.webapps.galaxy.api.job_lock`
	`galaxy.webapps.galaxy.api.job_ports`
	`galaxy.webapps.galaxy.api.libraries`
	`galaxy.webapps.galaxy.api.library_datasets`
	`galaxy.webapps.galaxy.api.licenses`
	`galaxy.webapps.galaxy.api.metrics`
	`galaxy.webapps.galaxy.api.page_revisions`
	`galaxy.webapps.galaxy.api.pages`
	`galaxy.webapps.galaxy.api.plugins`
	`galaxy.webapps.galaxy.api.provenance`
	`galaxy.webapps.galaxy.api.quotas`
	`galaxy.webapps.galaxy.api.remote_files`
	`galaxy.webapps.galaxy.api.roles`
	`galaxy.webapps.galaxy.api.sanitize_allow`
	`galaxy.webapps.galaxy.api.short_term_storage`
	`galaxy.webapps.galaxy.api.tags`
	`galaxy.webapps.galaxy.api.tasks`
	`galaxy.webapps.galaxy.api.tool_data`
	`galaxy.webapps.galaxy.api.tool_dependencies`
	`galaxy.webapps.galaxy.api.tool_entry_points`
	`galaxy.webapps.galaxy.api.tool_shed_repositories`
	`galaxy.webapps.galaxy.api.tools`
	`galaxy.webapps.galaxy.api.toolshed`
	`galaxy.webapps.galaxy.api.tours`
	`galaxy.webapps.galaxy.api.trs_consumer`
	`galaxy.webapps.galaxy.api.trs_search`
	`galaxy.webapps.galaxy.api.uploads`
	`galaxy.webapps.galaxy.api.users`
	`galaxy.webapps.galaxy.api.visualizations`
	`galaxy.webapps.galaxy.api.webhooks`
	`galaxy.webapps.galaxy.api.workflows`
	`galaxy.webapps.galaxy.buildapp`
	`galaxy.webapps.galaxy.controllers`
	`galaxy.webapps.galaxy.controllers.admin`
	`galaxy.webapps.galaxy.controllers.admin_toolshed`
	`galaxy.webapps.galaxy.controllers.async`
	`galaxy.webapps.galaxy.controllers.authnz`
	`galaxy.webapps.galaxy.controllers.data_manager`
	`galaxy.webapps.galaxy.controllers.dataset`
	`galaxy.webapps.galaxy.controllers.error`
	`galaxy.webapps.galaxy.controllers.forms`
	`galaxy.webapps.galaxy.controllers.history`
	`galaxy.webapps.galaxy.controllers.page`
	`galaxy.webapps.galaxy.controllers.root`
	`galaxy.webapps.galaxy.controllers.shed_tool_static`
	`galaxy.webapps.galaxy.controllers.tag`
	`galaxy.webapps.galaxy.controllers.tool_runner`
	`galaxy.webapps.galaxy.controllers.user`
	`galaxy.webapps.galaxy.controllers.visualization`
	`galaxy.webapps.galaxy.controllers.workflow`
	`galaxy.webapps.galaxy.fast_app`
	`galaxy.webapps.galaxy.fast_factory`
	`galaxy.webapps.galaxy.services`
	`galaxy.webapps.galaxy.services.authenticate`
	`galaxy.webapps.galaxy.services.base`
	`galaxy.webapps.galaxy.services.dataset_collections`
	`galaxy.webapps.galaxy.services.datasets`
	`galaxy.webapps.galaxy.services.histories`
	`galaxy.webapps.galaxy.services.invocations`
	`galaxy.webapps.galaxy.services.libraries`
	`galaxy.webapps.galaxy.services.library_folder_contents`
	`galaxy.webapps.galaxy.services.library_folders`
	`galaxy.webapps.galaxy.services.pages`
	`galaxy.webapps.galaxy.services.quotas`
	`galaxy.webapps.galaxy.services.sharable`
	`galaxy.webapps.galaxy.services.tools`
	`galaxy.webapps.galaxy.services.users`
	`galaxy.webapps.galaxy.services.visualizations`
	`galaxy.webapps.galaxy.services.workflows`
	`galaxy.webapps.galaxy.workers`
	`galaxy.webapps.openapi`
	`galaxy.webapps.openapi.utils`
	`galaxy.webapps.reports`
	`galaxy.webapps.reports.api`
	`galaxy.webapps.reports.app`
	`galaxy.webapps.reports.buildapp`
	`galaxy.webapps.reports.config`
	`galaxy.webapps.reports.controllers`
	`galaxy.webapps.reports.controllers.history`
	`galaxy.webapps.reports.controllers.home`
	`galaxy.webapps.reports.controllers.jobs`
	`galaxy.webapps.reports.controllers.query`
	`galaxy.webapps.reports.controllers.root`
	`galaxy.webapps.reports.controllers.system`
	`galaxy.webapps.reports.controllers.tools`
	`galaxy.webapps.reports.controllers.users`
	`galaxy.webapps.reports.controllers.workflows`
	`galaxy.webapps.reports.fast_app`
	`galaxy.webapps.reports.fast_factory`
	`galaxy.webapps.util`
	`galaxy.webhooks`
	`galaxy.work`
	`galaxy.work.context`
	`galaxy.workflow`
	`galaxy.workflow.extract`
	`galaxy.workflow.modules`
	`galaxy.workflow.refactor`
	`galaxy.workflow.refactor.execute`
	`galaxy.workflow.refactor.schema`
	`galaxy.workflow.render`
	`galaxy.workflow.reports`
	`galaxy.workflow.reports.generators`
	`galaxy.workflow.reports.generators.markdown`
	`galaxy.workflow.resources`
	`galaxy.workflow.run`
	`galaxy.workflow.run_request`
	`galaxy.workflow.schedulers`
	`galaxy.workflow.schedulers.core`
	`galaxy.workflow.scheduling_manager`
	`galaxy.workflow.steps`
	`galaxy.workflow.trs_proxy`
	`galaxy_ext`
	`galaxy_ext.container_monitor`
	`galaxy_ext.container_monitor.monitor`
	`galaxy_ext.expressions`
	`galaxy_ext.expressions.handle_job`
	`galaxy_ext.metadata`
	`galaxy_ext.metadata.set_metadata`
	`galaxy_test`
	`galaxy_test.api`
	`galaxy_test.api.cwl`
	`galaxy_test.api.sharable`
	`galaxy_test.api.test_authenticate`
	`galaxy_test.api.test_configuration`
	`galaxy_test.api.test_dataset_collections`
	`galaxy_test.api.test_datasets`
	`galaxy_test.api.test_datatypes`
	`galaxy_test.api.test_display_applications`
	`galaxy_test.api.test_folder_contents`
	`galaxy_test.api.test_folders`
	`galaxy_test.api.test_framework`
	`galaxy_test.api.test_group_roles`
	`galaxy_test.api.test_group_users`
	`galaxy_test.api.test_groups`
	`galaxy_test.api.test_histories`
	`galaxy_test.api.test_history_contents`
	`galaxy_test.api.test_history_contents_provenance`
	`galaxy_test.api.test_jobs`
	`galaxy_test.api.test_libraries`
	`galaxy_test.api.test_licenses`
	`galaxy_test.api.test_page_revisions`
	`galaxy_test.api.test_pages`
	`galaxy_test.api.test_roles`
	`galaxy_test.api.test_tool_data`
	`galaxy_test.api.test_tools`
	`galaxy_test.api.test_tools_upload`
	`galaxy_test.api.test_tours`
	`galaxy_test.api.test_users`
	`galaxy_test.api.test_visualizations`
	`galaxy_test.api.test_webhooks`
	`galaxy_test.api.test_workflow_extraction`
	`galaxy_test.api.test_workflows`
	`galaxy_test.api.test_workflows_cwl`
	`galaxy_test.api.test_workflows_from_yaml`
	`galaxy_test.base`
	`galaxy_test.base.api`
	`galaxy_test.base.api_asserts`
	`galaxy_test.base.api_util`
	`galaxy_test.base.constants`
	`galaxy_test.base.env`
	`galaxy_test.base.interactor`
	`galaxy_test.base.populators`
	`galaxy_test.base.rules_test_data`
	`galaxy_test.base.testcase`
	`galaxy_test.base.workflow_fixtures`
	`galaxy_test.conftest`
	`galaxy_test.driver`
	`galaxy_test.driver.driver_util`
	`galaxy_test.driver.integration_setup`
	`galaxy_test.driver.integration_util`
	`galaxy_test.driver.test_logging`
	`galaxy_test.driver.testcase`
	`galaxy_test.performance`
	`galaxy_test.performance.test_workflow_framework_performance`
	`galaxy_test.selenium`
	`galaxy_test.selenium.conftest`
	`galaxy_test.selenium.framework`
	`galaxy_test.selenium.jupyter`
	`galaxy_test.selenium.jupyter_context`
	`galaxy_test.selenium.test_admin_app`
	`galaxy_test.selenium.test_anon_history`
	`galaxy_test.selenium.test_change_password`
	`galaxy_test.selenium.test_collection_builders`
	`galaxy_test.selenium.test_collection_edit`
	`galaxy_test.selenium.test_custom_builds`
	`galaxy_test.selenium.test_data_source_tools`
	`galaxy_test.selenium.test_dataset_metadata_download`
	`galaxy_test.selenium.test_histories_list`
	`galaxy_test.selenium.test_history_copy_elements`
	`galaxy_test.selenium.test_history_dataset_state`
	`galaxy_test.selenium.test_history_multi_view`
	`galaxy_test.selenium.test_history_options`
	`galaxy_test.selenium.test_history_panel`
	`galaxy_test.selenium.test_history_panel_collections`
	`galaxy_test.selenium.test_history_sharing`
	`galaxy_test.selenium.test_invocation_grid`
	`galaxy_test.selenium.test_library_contents`
	`galaxy_test.selenium.test_library_landing`
	`galaxy_test.selenium.test_library_to_collections`
	`galaxy_test.selenium.test_login`
	`galaxy_test.selenium.test_navigates_galaxy`
	`galaxy_test.selenium.test_pages`
	`galaxy_test.selenium.test_personal_information`
	`galaxy_test.selenium.test_registration`
	`galaxy_test.selenium.test_sign_out`
	`galaxy_test.selenium.test_sizzle_loading`
	`galaxy_test.selenium.test_stock_tours`
	`galaxy_test.selenium.test_tool_describing_tours`
	`galaxy_test.selenium.test_tool_form`
	`galaxy_test.selenium.test_uploads`
	`galaxy_test.selenium.test_workflow_editor`
	`galaxy_test.selenium.test_workflow_invocation_details`
	`galaxy_test.selenium.test_workflow_management`
	`galaxy_test.selenium.test_workflow_run`
	`galaxy_test.selenium.test_workflow_sharing`

	t
	`tool_shed`
	`tool_shed.dependencies`
	`tool_shed.dependencies.attribute_handlers`
	`tool_shed.dependencies.repository`
	`tool_shed.dependencies.repository.relation_builder`
	`tool_shed.dependencies.tool`
	`tool_shed.dependencies.tool.tag_attribute_handler`
	`tool_shed.galaxy_install`
	`tool_shed.grids`
	`tool_shed.grids.admin_grids`
	`tool_shed.grids.repository_grid_filter_manager`
	`tool_shed.grids.repository_grids`
	`tool_shed.grids.util`
	`tool_shed.managers`
	`tool_shed.managers.groups`
	`tool_shed.managers.repositories`
	`tool_shed.metadata`
	`tool_shed.metadata.repository_metadata_manager`
	`tool_shed.repository_registry`
	`tool_shed.repository_types`
	`tool_shed.repository_types.metadata`
	`tool_shed.repository_types.registry`
	`tool_shed.repository_types.repository_suite_definition`
	`tool_shed.repository_types.tool_dependency_definition`
	`tool_shed.repository_types.unrestricted`
	`tool_shed.repository_types.util`
	`tool_shed.test`
	`tool_shed.test.base`
	`tool_shed.test.base.common`
	`tool_shed.test.base.test_db_util`
	`tool_shed.test.base.twilltestcase`
	`tool_shed.test.functional`
	`tool_shed.test.functional.test_0000_basic_repository_features`
	`tool_shed.test.functional.test_0010_repository_with_tool_dependencies`
	`tool_shed.test.functional.test_0020_basic_repository_dependencies`
	`tool_shed.test.functional.test_0030_repository_dependency_revisions`
	`tool_shed.test.functional.test_0040_repository_circular_dependencies`
	`tool_shed.test.functional.test_0050_circular_dependencies_4_levels`
	`tool_shed.test.functional.test_0070_invalid_tool`
	`tool_shed.test.functional.test_0080_advanced_circular_dependencies`
	`tool_shed.test.functional.test_0090_tool_search`
	`tool_shed.test.functional.test_0100_complex_repository_dependencies`
	`tool_shed.test.functional.test_0110_invalid_simple_repository_dependencies`
	`tool_shed.test.functional.test_0120_simple_repository_dependency_multiple_owners`
	`tool_shed.test.functional.test_0140_tool_help_images`
	`tool_shed.test.functional.test_0150_prior_installation_required`
	`tool_shed.test.functional.test_0160_circular_prior_installation_required`
	`tool_shed.test.functional.test_0170_complex_prior_installation_required`
	`tool_shed.test.functional.test_0300_reset_all_metadata`
	`tool_shed.test.functional.test_0310_hg_api_features`
	`tool_shed.test.functional.test_0420_citable_urls_for_repositories`
	`tool_shed.test.functional.test_0430_browse_utilities`
	`tool_shed.test.functional.test_0440_deleting_dependency_definitions`
	`tool_shed.test.functional.test_0460_upload_to_repository`
	`tool_shed.test.functional.test_0470_tool_dependency_repository_type`
	`tool_shed.test.functional.test_0480_tool_dependency_xml_verification`
	`tool_shed.test.functional.test_0530_repository_admin_feature`
	`tool_shed.test.functional.test_0550_metadata_updated_dependencies`
	`tool_shed.test.functional.test_1000_install_basic_repository`
	`tool_shed.test.functional.test_1010_install_repository_with_tool_dependencies`
	`tool_shed.test.functional.test_1020_install_repository_with_repository_dependencies`
	`tool_shed.test.functional.test_1030_install_repository_with_dependency_revisions`
	`tool_shed.test.functional.test_1040_install_repository_basic_circular_dependencies`
	`tool_shed.test.functional.test_1050_circular_dependencies_4_levels`
	`tool_shed.test.functional.test_1070_invalid_tool`
	`tool_shed.test.functional.test_1080_advanced_circular_dependency_installation`
	`tool_shed.test.functional.test_1090_repository_dependency_handling`
	`tool_shed.test.functional.test_1100_install_updated_repository_dependencies`
	`tool_shed.test.functional.test_1120_install_repository_with_complex_dependencies`
	`tool_shed.test.functional.test_1130_install_repository_with_invalid_repository_dependency`
	`tool_shed.test.functional.test_1140_simple_repository_dependency_multiple_owners`
	`tool_shed.test.functional.test_1160_tool_help_images`
	`tool_shed.test.functional.test_1170_prior_installation_required`
	`tool_shed.test.functional.test_1180_circular_prior_installation_required`
	`tool_shed.test.functional.test_1190_complex_prior_installation_required`
	`tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository`
	`tool_shed.test.functional.test_1210_uninstall_reinstall_repository_with_tool_dependencies`
	`tool_shed.test.functional.test_1230_uninstall_reinstall_repository_with_dependency_revisions`
	`tool_shed.test.functional.test_1300_reset_all_metadata`
	`tool_shed.test.functional.test_1410_update_manager`
	`tool_shed.test.functional.test_1430_repair_installed_repository`
	`tool_shed.test.functional.test_1460_data_managers`
	`tool_shed.test.functional.test_1470_updating_installed_repositories`
	`tool_shed.tools`
	`tool_shed.tools.data_table_manager`
	`tool_shed.tools.tool_validator`
	`tool_shed.tools.tool_version_manager`
	`tool_shed.util`
	`tool_shed.util.admin_util`
	`tool_shed.util.basic_util`
	`tool_shed.util.commit_util`
	`tool_shed.util.common_util`
	`tool_shed.util.container_util`
	`tool_shed.util.encoding_util`
	`tool_shed.util.hg_util`
	`tool_shed.util.hgweb_config`
	`tool_shed.util.metadata_util`
	`tool_shed.util.readme_util`
	`tool_shed.util.repository_content_util`
	`tool_shed.util.repository_util`
	`tool_shed.util.search_util`
	`tool_shed.util.shed_index`
	`tool_shed.util.shed_util_common`
	`tool_shed.util.tool_dependency_util`
	`tool_shed.util.tool_util`
	`tool_shed.util.web_util`
	`tool_shed.util.xml_util`
	`tool_shed.utility_containers`
	`tool_shed.utility_containers.utility_container_manager`
	`tool_shed.webapp`
	`tool_shed.webapp.api`
	`tool_shed.webapp.api.authenticate`
	`tool_shed.webapp.api.categories`
	`tool_shed.webapp.api.configuration`
	`tool_shed.webapp.api.groups`
	`tool_shed.webapp.api.repositories`
	`tool_shed.webapp.api.repository_revisions`
	`tool_shed.webapp.api.tools`
	`tool_shed.webapp.api.users`
	`tool_shed.webapp.app`
	`tool_shed.webapp.buildapp`
	`tool_shed.webapp.config`
	`tool_shed.webapp.controllers`
	`tool_shed.webapp.controllers.admin`
	`tool_shed.webapp.controllers.groups`
	`tool_shed.webapp.controllers.hg`
	`tool_shed.webapp.controllers.repository`
	`tool_shed.webapp.controllers.user`
	`tool_shed.webapp.fast_app`
	`tool_shed.webapp.fast_factory`
	`tool_shed.webapp.framework`
	`tool_shed.webapp.framework.decorators`
	`tool_shed.webapp.framework.middleware`
	`tool_shed.webapp.framework.middleware.remoteuser`
	`tool_shed.webapp.model`
	`tool_shed.webapp.model.mapping`
	`tool_shed.webapp.search`
	`tool_shed.webapp.search.repo_search`
	`tool_shed.webapp.search.tool_search`
	`tool_shed.webapp.security`
	`tool_shed.webapp.util`
	`tool_shed.webapp.util.ratings_util`
	`tool_shed.webapp.util.shed_statistics`