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galaxy.dependencies package

Determine what optional dependencies are needed.

class galaxy.dependencies.BaseConditionalDependencies(config_file, config=None)[source]

Bases: object

Machinery and checks shared by every app that ships a config file.

A check_<dependency> method here must only read options that every subclass’ config schema defines. App-specific checks belong on the subclass; check() treats a missing method as “not needed”.

config_section: str | None = None

__init__(config_file, config=None)[source]

parse_configs()[source]: Collect app-specific signals from auxiliary config files.

get_conditional_requirements()[source]

check(name)[source]

check_psycopg2_binary()[source]

check_psycopg()[source]

check_mysqlclient()[source]

check_sentry_sdk()[source]

class galaxy.dependencies.ToolShedConditionalDependencies(config_file, config=None)[source]

Bases: BaseConditionalDependencies

config_section: str | None = 'tool_shed'

class galaxy.dependencies.ConditionalDependencies(config_file, config=None)[source]

Bases: BaseConditionalDependencies

__init__(config_file, config=None)[source]

parse_configs()[source]: Collect app-specific signals from auxiliary config files.

check_drmaa()[source]

check_galaxycloudrunner()[source]

check_total_perspective_vortex()[source]

check_pbs_python()[source]

check_pykube_ng()[source]

check_chronos_python()[source]

check_htcondor()[source]

check_boto3_python()[source]

check_fluent_logger()[source]

check_statsd()[source]

check_python_ldap()[source]

check_ldap3()[source]

check_python_pam()[source]

check_azure_storage()[source]

check_boto3()[source]

check_cloudbridge()[source]

check_kamaki()[source]

check_python_irodsclient()[source]

check_dropboxdrivefs()[source]

check_webdav4()[source]

check_fs_anvilfs()[source]

check_fs_sshfs()[source]

check_gdrive_fsspec()[source]

check_gcsfs()[source]

check_onedatafilerestclient()[source]

check_fs_onedatarestfs()[source]

check_fs_basespace()[source]

check_rspace_client()[source]

check_fs_irods()[source]

check_watchdog()[source]

check_python_gitlab()[source]

check_pygithub()[source]

check_influxdb()[source]

check_tensorflow()[source]

check_openai()[source]

check_pydantic_ai()[source]

check_weasyprint()[source]

check_pydyf()[source]

check_hvac()[source]

check_pkce()[source]

check_rucio_clients()[source]

check_redis()[source]

check_adlfs()[source]

check_huggingface_hub()[source]

check_omero_py()[source]

check_iiif_fsspec()[source]

check_mavedb_fsspec()[source]

galaxy.dependencies.strip_comment(line)[source]

galaxy.dependencies.optional(config_file=None, app='galaxy')[source]