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lib
- galaxy package
- Subpackages
- galaxy.actions package
- galaxy.app_unittest_utils package
- galaxy.auth package
- galaxy.authnz package
- galaxy.celery package
- galaxy.config package
LOGGING_CONFIG_DEFAULT
DEPENDENT_CONFIG_DEFAULTS
configure_logging()
find_root()
expand_pretty_datetime_format()
BaseAppConfiguration
CommonConfigurationMixin
GalaxyAppConfiguration
Configuration
reload_config_options()
get_database_engine_options()
- Submodules
- galaxy.config.config_manage module
- galaxy.config.schema module
- galaxy.config.script module
- galaxy.datatypes package
- Subpackages
- Submodules
- galaxy.datatypes.annotation module
- galaxy.datatypes.anvio module
- galaxy.datatypes.assembly module
- galaxy.datatypes.binary module
- galaxy.datatypes.blast module
- galaxy.datatypes.checkers module
- galaxy.datatypes.chrominfo module
- galaxy.datatypes.constructive_solid_geometry module
- galaxy.datatypes.coverage module
- galaxy.datatypes.data module
- galaxy.datatypes.flow module
- galaxy.datatypes.genetics module
- galaxy.datatypes.gis module
- galaxy.datatypes.goldenpath module
- galaxy.datatypes.graph module
- galaxy.datatypes.hdf5 module
- galaxy.datatypes.images module
- galaxy.datatypes.interval module
- galaxy.datatypes.isa module
- galaxy.datatypes.media module
- galaxy.datatypes.metacyto module
- galaxy.datatypes.metadata module
- galaxy.datatypes.microarrays module
- galaxy.datatypes.molecules module
- galaxy.datatypes.mothur module
- galaxy.datatypes.msa module
- galaxy.datatypes.neo4j module
- galaxy.datatypes.ngsindex module
- galaxy.datatypes.phylip module
- galaxy.datatypes.plant_tribes module
- galaxy.datatypes.proteomics module
- galaxy.datatypes.qiime2 module
- galaxy.datatypes.qualityscore module
- galaxy.datatypes.registry module
- galaxy.datatypes.sequence module
- galaxy.datatypes.sniff module
- galaxy.datatypes.spaln module
- galaxy.datatypes.speech module
- galaxy.datatypes.tabular module
- galaxy.datatypes.text module
- galaxy.datatypes.tracks module
- galaxy.datatypes.triples module
- galaxy.datatypes.upload_util module
- galaxy.datatypes.xml module
- galaxy.dependencies package
- galaxy.exceptions package
MessageException
ItemDeletionException
ObjectInvalid
AcceptedRetryLater
NoContentException
ActionInputError
DuplicatedSlugException
DuplicatedIdentifierException
ObjectAttributeInvalidException
ObjectAttributeMissingException
MalformedId
UserInvalidRunAsException
MalformedContents
UnknownContentsType
RequestParameterMissingException
ToolMetaParameterException
ToolMissingException
RequestParameterInvalidException
ToolInputsNotReadyException
ToolInputsNotOKException
RealUserRequiredException
AuthenticationFailed
AuthenticationRequired
ItemAccessibilityException
ItemOwnershipException
ItemImmutableException
ConfigDoesNotAllowException
InsufficientPermissionsException
UserCannotRunAsException
UserRequiredException
AdminRequiredException
UserActivationRequiredException
ItemAlreadyClaimedException
ObjectNotFound
Conflict
ItemMustBeClaimed
DeprecatedMethod
ConfigurationError
InconsistentDatabase
InconsistentApplicationState
InternalServerError
ToolExecutionError
NotImplemented
InvalidFileFormatError
ReferenceDataError
ServerNotConfiguredForRequest
HandlerAssignmentError
- Submodules
- galaxy.exceptions.error_codes module
- galaxy.files package
FileSourcePath
FileSourceScore
NoMatchingFileSource
UserDefinedFileSources
NullUserDefinedFileSources
ConfiguredFileSourcesConf
ConfiguredFileSources
NullConfiguredFileSources
DictifiableFilesSourceContext
FileSourceDictifiable
FileSourcesUserContext
ProvidesFileSourcesUserContext
DictFileSourcesUserContext
- Subpackages
- Submodules
- galaxy.files.uris module
- galaxy.forms package
- galaxy.job_execution package
- galaxy.job_metrics package
- galaxy.jobs package
JobDestination
NoopQueue
JobToolConfiguration
JobConfiguration
JobWrapper
TaskWrapper
- Subpackages
- Submodules
- galaxy.jobs.command_factory module
- galaxy.jobs.dynamic_tool_destination module
- galaxy.jobs.handler module
- galaxy.jobs.manager module
- galaxy.jobs.mapper module
- galaxy.jobs.rule_helper module
- galaxy.jobs.stock_rules module
- galaxy.managers package
- Submodules
- galaxy.managers.annotatable module
- galaxy.managers.api_keys module
- galaxy.managers.base module
- galaxy.managers.citations module
- galaxy.managers.cloud module
- galaxy.managers.cloudauthzs module
- galaxy.managers.collections module
- galaxy.managers.collections_util module
- galaxy.managers.configuration module
- galaxy.managers.context module
- galaxy.managers.datasets module
- galaxy.managers.datatypes module
- galaxy.managers.deletable module
- galaxy.managers.display_applications module
- galaxy.managers.executables module
- galaxy.managers.folders module
- galaxy.managers.genomes module
- galaxy.managers.group_roles module
- galaxy.managers.group_users module
- galaxy.managers.groups module
- galaxy.managers.hdas module
- galaxy.managers.hdcas module
- galaxy.managers.histories module
- galaxy.managers.history_contents module
- galaxy.managers.interactivetool module
- galaxy.managers.jobs module
- galaxy.managers.lddas module
- galaxy.managers.libraries module
- galaxy.managers.library_datasets module
- galaxy.managers.licenses module
- galaxy.managers.markdown_parse module
- galaxy.managers.markdown_util module
- galaxy.managers.metrics module
- galaxy.managers.model_stores module
- galaxy.managers.pages module
- galaxy.managers.quotas module
- galaxy.managers.ratable module
- galaxy.managers.rbac_secured module
- galaxy.managers.remote_files module
- galaxy.managers.roles module
- galaxy.managers.secured module
- galaxy.managers.session module
- galaxy.managers.sharable module
- galaxy.managers.taggable module
- galaxy.managers.tags module
- galaxy.managers.tool_data module
- galaxy.managers.tools module
- galaxy.managers.users module
- galaxy.managers.visualizations module
- galaxy.managers.workflows module
- galaxy.metadata package
- galaxy.model package
now()
ConfigurationTemplateEnvironmentSecret
ConfigurationTemplateEnvironmentVariable
TransformAction
get_uuid()
Base
RepresentById
NoConverterException
ConverterDependencyException
set_datatypes_registry()
HasTags
SerializeFilesHandler
SerializationOptions
Serializable
HasName
UsesCreateAndUpdateTime
WorkerProcess
cached_id()
JobLike
calculate_user_disk_usage_statements()
calculate_disk_usage_per_objectstore()
UserQuotaBasicUsage
UserQuotaUsage
UserObjectstoreUsage
User
PasswordResetToken
ToolSource
ToolRequest
DynamicTool
BaseJobMetric
JobMetricText
JobMetricNumeric
TaskMetricText
TaskMetricNumeric
IoDicts
Job
Task
JobParameter
JobToInputDatasetAssociation
JobToOutputDatasetAssociation
JobToInputDatasetCollectionAssociation
JobToInputDatasetCollectionElementAssociation
JobToOutputDatasetCollectionAssociation
JobToImplicitOutputDatasetCollectionAssociation
JobToInputLibraryDatasetAssociation
JobToOutputLibraryDatasetAssociation
JobStateHistory
ImplicitlyCreatedDatasetCollectionInput
ImplicitCollectionJobs
ImplicitCollectionJobsJobAssociation
PostJobAction
PostJobActionAssociation
JobExternalOutputMetadata
FakeDatasetAssociation
JobExportHistoryArchive
JobImportHistoryArchive
StoreExportAssociation
JobContainerAssociation
InteractiveToolEntryPoint
GenomeIndexToolData
Group
UserGroupAssociation
Notification
UserNotificationAssociation
is_hda()
HistoryAudit
History
UserShareAssociation
HistoryUserShareAssociation
UserRoleAssociation
GroupRoleAssociation
Role
UserQuotaSourceUsage
UserQuotaAssociation
GroupQuotaAssociation
Quota
DefaultQuotaAssociation
DatasetPermissions
LibraryPermissions
LibraryFolderPermissions
LibraryDatasetPermissions
LibraryDatasetDatasetAssociationPermissions
DefaultUserPermissions
DefaultHistoryPermissions
StorableObject
setup_global_object_store_for_models()
Dataset
DatasetSource
HasHashFunctionName
DatasetSourceHash
DatasetHash
datatype_for_extension()
DatasetInstance
HistoryDatasetAssociation
HistoryDatasetAssociationHistory
HistoryDatasetAssociationDisplayAtAuthorization
HistoryDatasetAssociationSubset
Library
LibraryFolder
LibraryDataset
LibraryDatasetDatasetAssociation
ExtendedMetadata
ExtendedMetadataIndex
LibraryInfoAssociation
LibraryFolderInfoAssociation
LibraryDatasetDatasetInfoAssociation
ImplicitlyConvertedDatasetAssociation
InnerCollectionFilter
DatasetCollection
DatasetCollectionInstance
HistoryDatasetCollectionAssociation
LibraryDatasetCollectionAssociation
DatasetCollectionElement
Event
GalaxySession
GalaxySessionToHistoryAssociation
StoredWorkflow
Workflow
WorkflowStep
WorkflowStepInput
WorkflowStepConnection
WorkflowOutput
WorkflowComment
StoredWorkflowUserShareAssociation
StoredWorkflowMenuEntry
InputWithRequest
InputToMaterialize
WorkflowInvocation
WorkflowInvocationToSubworkflowInvocationAssociation
WorkflowInvocationMessage
EffectiveOutput
WorkflowInvocationStepObjectStores
WorkflowInvocationStep
WorkflowRequestInputParameter
WorkflowRequestStepState
WorkflowRequestToInputDatasetAssociation
WorkflowRequestToInputDatasetCollectionAssociation
WorkflowRequestInputStepParameter
WorkflowInvocationOutputDatasetAssociation
WorkflowInvocationOutputDatasetCollectionAssociation
WorkflowInvocationOutputValue
WorkflowInvocationStepOutputDatasetAssociation
WorkflowInvocationStepOutputDatasetCollectionAssociation
MetadataFile
FormDefinition
FormDefinitionCurrent
FormValues
UserAddress
PSAAssociation
PSACode
PSANonce
PSAPartial
UserAuthnzToken
CustosAuthnzToken
Page
PageRevision
PageUserShareAssociation
Visualization
VisualizationRevision
VisualizationUserShareAssociation
Tag
ItemTagAssociation
HistoryTagAssociation
HistoryDatasetAssociationTagAssociation
LibraryDatasetDatasetAssociationTagAssociation
PageTagAssociation
WorkflowStepTagAssociation
StoredWorkflowTagAssociation
VisualizationTagAssociation
HistoryDatasetCollectionTagAssociation
LibraryDatasetCollectionTagAssociation
ToolTagAssociation
HistoryAnnotationAssociation
HistoryDatasetAssociationAnnotationAssociation
StoredWorkflowAnnotationAssociation
WorkflowStepAnnotationAssociation
PageAnnotationAssociation
VisualizationAnnotationAssociation
HistoryDatasetCollectionAssociationAnnotationAssociation
LibraryDatasetCollectionAnnotationAssociation
Vault
ItemRatingAssociation
HistoryRatingAssociation
HistoryDatasetAssociationRatingAssociation
StoredWorkflowRatingAssociation
PageRatingAssociation
VisualizationRatingAssociation
HistoryDatasetCollectionRatingAssociation
LibraryDatasetCollectionRatingAssociation
DataManagerHistoryAssociation
DataManagerJobAssociation
UserPreference
UsesTemplatesAppConfig
HasConfigSecrets
HasConfigEnvironment
HasConfigTemplate
UserObjectStore
UserFileSource
ToolLandingRequest
WorkflowLandingRequest
UserAction
APIKeys
copy_list()
CleanupEvent
CleanupEventDatasetAssociation
CleanupEventMetadataFileAssociation
CleanupEventHistoryAssociation
CleanupEventHistoryDatasetAssociationAssociation
CleanupEventLibraryAssociation
CleanupEventLibraryFolderAssociation
CleanupEventLibraryDatasetAssociation
CleanupEventLibraryDatasetDatasetAssociationAssociation
CleanupEventImplicitlyConvertedDatasetAssociationAssociation
CeleryUserRateLimit
receive_init()
JobStateSummary
- Subpackages
- Submodules
- galaxy.model.base module
- galaxy.model.custom_types module
- galaxy.model.database_heartbeat module
- galaxy.model.database_utils module
- galaxy.model.deferred module
- galaxy.model.index_filter_util module
- galaxy.model.item_attrs module
- galaxy.model.mapping module
- galaxy.model.metadata module
- galaxy.model.none_like module
- galaxy.model.scoped_session module
- galaxy.model.search module
- galaxy.model.security module
- galaxy.model.tags module
- galaxy.objectstore package
UserObjectStoreResolver
BaseUserObjectStoreResolver
ObjectStore
BaseObjectStore
ConcreteObjectStore
DiskObjectStore
NestedObjectStore
user_object_store_configuration_to_config_dict()
DistributedObjectStore
HierarchicalObjectStore
serialize_static_object_store_config()
QuotaModel
ConcreteObjectStoreModel
type_to_object_store_class()
build_test_object_store_from_user_config()
build_object_store_from_config()
UserObjectStoresAppConfig
concrete_object_store()
local_extra_dirs()
config_to_dict()
QuotaSourceInfo
DeviceSourceMap
QuotaSourceMap
ObjectCreationProblem
ObjectCreationProblemSharingDisabled
ObjectCreationProblemStoreFull
ObjectStorePopulator
persist_extra_files()
persist_extra_files_for_dataset()
- Subpackages
- Submodules
- galaxy.objectstore.azure_blob module
- galaxy.objectstore.cloud module
- galaxy.objectstore.irods module
- galaxy.objectstore.pithos module
- galaxy.objectstore.pulsar module
- galaxy.objectstore.s3 module
- galaxy.objectstore.s3_multipart_upload module
- galaxy.quota package
- galaxy.schema package
BootstrapAdminUser
ValueFilterQueryParams
PaginationQueryParams
FilterQueryParams
SerializationParams
PdfDocumentType
APIKeyModel
partial_model()
- Submodules
- galaxy.schema.fetch_data module
- galaxy.schema.fields module
- galaxy.schema.remote_files module
- galaxy.schema.schema module
- galaxy.schema.tasks module
- galaxy.schema.types module
- galaxy.security package
- galaxy.selenium package
- Subpackages
- Submodules
- galaxy.selenium.cli module
- galaxy.selenium.components module
- galaxy.selenium.context module
- galaxy.selenium.data module
- galaxy.selenium.driver_factory module
- galaxy.selenium.has_driver module
- galaxy.selenium.jupyter_context module
- galaxy.selenium.navigates_galaxy module
- galaxy.selenium.sizzle module
- galaxy.selenium.smart_components module
- galaxy.tool_shed package
- galaxy.tool_util package
- galaxy.tools package
safe_update
get_safe_version()
ToolNotFoundException
create_tool_from_source()
create_tool_from_representation()
NullToolTagManager
PersistentToolTagManager
ToolBox
DefaultToolState
Tool
OutputParameterJSONTool
ExpressionTool
DataSourceTool
AsyncDataSourceTool
DataDestinationTool
SetMetadataTool
ExportHistoryTool
ImportHistoryTool
InteractiveTool
DataManagerTool
DatabaseOperationTool
UnzipCollectionTool
ZipCollectionTool
CrossProductFlatCollectionTool
CrossProductNestedCollectionTool
BuildListCollectionTool
ExtractDatasetCollectionTool
MergeCollectionTool
FilterDatasetsTool
FilterFailedDatasetsTool
KeepSuccessDatasetsTool
FilterEmptyDatasetsTool
FilterNullTool
FlattenTool
SortTool
HarmonizeTool
RelabelFromFileTool
ApplyRulesTool
TagFromFileTool
FilterFromFileTool
DuplicateFileToCollectionTool
TracksterConfig
SetParamAction
BadValue
InterruptedUpload
- Subpackages
- Submodules
- galaxy.tools.biotools module
- galaxy.tools.cache module
- galaxy.tools.data_fetch module
- galaxy.tools.errors module
- galaxy.tools.evaluation module
- galaxy.tools.exception_handling module
- galaxy.tools.execute module
- galaxy.tools.recommendations module
- galaxy.tools.remote_tool_eval module
- galaxy.tools.repositories module
- galaxy.tools.special_tools module
- galaxy.tools.test module
- galaxy.tools.wrappers module
- galaxy.tours package
- galaxy.util package
Element
SubElement()
ElementTree
XML()
str_removeprefix()
remove_protocol_from_url()
is_binary()
is_uuid()
directory_hash_id()
get_charset_from_http_headers()
synchronized()
iter_start_of_line()
file_reader()
chunk_iterable()
unique_id()
parse_xml()
parse_xml_string()
parse_xml_string_to_etree()
xml_to_string()
xml_element_compare()
xml_element_list_compare()
xml_element_to_dict()
pretty_print_xml()
get_file_size()
shrink_stream_by_size()
shrink_and_unicodify()
shrink_string_by_size()
pretty_print_time_interval()
restore_text()
sanitize_text()
sanitize_lists_to_string()
sanitize_param()
sanitize_for_filename()
find_instance_nested()
mask_password_from_url()
ready_name_for_url()
which()
in_directory()
merge_sorted_iterables()
Params
xml_text()
parse_resource_parameters()
asbool()
string_as_bool()
string_as_bool_or_none()
listify()
commaify()
unicodify()
filesystem_safe_string()
smart_str()
strip_control_characters()
object_to_string()
string_to_object()
clean_multiline_string()
ParamsWithSpecs
compare_urls()
read_build_sites()
relativize_symlinks()
stringify_dictionary_keys()
mkstemp_ln()
umask_fix_perms()
docstring_trim()
metric_prefix()
shorten_with_metric_prefix()
nice_size()
size_to_bytes()
send_mail()
force_symlink()
unlink()
move_merge()
safe_str_cmp()
galaxy_directory()
in_packages()
config_directories_from_setting()
parse_int()
parse_non_hex_float()
build_url()
url_get()
is_url()
check_github_api_response_rate_limit()
download_to_file()
stream_to_open_named_file()
classproperty
ExecutionTimer
StructuredExecutionTimer
enum_values()
hex_to_lowercase_alphanum()
lowercase_alphanum_to_hex()
- Subpackages
- Submodules
- galaxy.util.aliaspickler module
- galaxy.util.bool_expressions module
- galaxy.util.bunch module
- galaxy.util.bytesize module
- galaxy.util.checkers module
- galaxy.util.commands module
- galaxy.util.compression_utils module
- galaxy.util.dbkeys module
- galaxy.util.dictifiable module
- galaxy.util.dynamic module
- galaxy.util.expressions module
- galaxy.util.facts module
- galaxy.util.filelock module
- galaxy.util.form_builder module
- galaxy.util.hash_util module
- galaxy.util.heartbeat module
- galaxy.util.image_util module
- galaxy.util.inflection module
- galaxy.util.json module
- galaxy.util.jstree module
- galaxy.util.lazy_process module
- galaxy.util.monitors module
- galaxy.util.odict module
- galaxy.util.oset module
- galaxy.util.permutations module
- galaxy.util.plugin_config module
- galaxy.util.properties module
- galaxy.util.renamed_temporary_file module
- galaxy.util.resources module
- galaxy.util.rules_dsl module
- galaxy.util.sanitize_html module
- galaxy.util.script module
- galaxy.util.search module
- galaxy.util.simplegraph module
- galaxy.util.sleeper module
- galaxy.util.sockets module
- galaxy.util.specs module
- galaxy.util.sqlite module
- galaxy.util.submodules module
- galaxy.util.task module
- galaxy.util.template module
- galaxy.util.tool_version module
- galaxy.util.topsort module
- galaxy.util.ucsc module
- galaxy.util.validation module
- galaxy.util.watcher module
- galaxy.util.xml_macros module
- galaxy.util.yaml_util module
- galaxy.util.zipstream module
- galaxy.visualization package
- galaxy.web package
do_not_cache()
error()
expose()
expose_api()
expose_api_anonymous()
expose_api_anonymous_and_sessionless()
expose_api_raw()
expose_api_raw_anonymous()
expose_api_raw_anonymous_and_sessionless()
format_return_as_json()
json()
json_pretty()
legacy_expose_api()
legacy_expose_api_anonymous()
legacy_expose_api_raw()
legacy_expose_api_raw_anonymous()
require_admin()
require_login()
url_for()
- Subpackages
- Submodules
- galaxy.web.form_builder module
- galaxy.web.statsd_client module
- galaxy.web_stack package
ApplicationStackLogFilter
ApplicationStack
WebApplicationStack
GunicornApplicationStack
WeblessApplicationStack
application_stack_class()
application_stack_instance()
application_stack_log_filter()
application_stack_log_formatter()
register_postfork_function()
get_app_kwds()
- Submodules
- galaxy.web_stack.gunicorn_config module
- galaxy.web_stack.handlers module
- galaxy.web_stack.message module
- galaxy.web_stack.transport module
- galaxy.webapps package
- galaxy.webhooks package
- galaxy.work package
- galaxy.workflow package
- Submodules
- galaxy.app module
HaltableContainer
SentryClientMixin
MinimalGalaxyApplication
MinimalGalaxyApplication.model
MinimalGalaxyApplication.tool_cache
MinimalGalaxyApplication.job_config
MinimalGalaxyApplication.toolbox_search
MinimalGalaxyApplication.container_finder
MinimalGalaxyApplication.install_model
MinimalGalaxyApplication.object_store
MinimalGalaxyApplication.__init__()
MinimalGalaxyApplication.config
MinimalGalaxyApplication.configure_fluent_log()
MinimalGalaxyApplication.wait_for_toolbox_reload()
MinimalGalaxyApplication.toolbox
MinimalGalaxyApplication.reindex_tool_search()
MinimalGalaxyApplication.tool_dependency_dir
GalaxyManagerApplication
UniverseApplication
StatsdStructuredExecutionTimer
ExecutionTimerFactory
- galaxy.config_watchers module
ConfigWatchers
ConfigWatchers.__init__()
ConfigWatchers.watchers
ConfigWatchers.change_state()
ConfigWatchers.start()
ConfigWatchers.shutdown()
ConfigWatchers.update_watch_data_table_paths()
ConfigWatchers.data_manager_configs
ConfigWatchers.tool_data_paths
ConfigWatchers.tool_config_paths
ConfigWatchers.job_rules_paths
- galaxy.di module
- galaxy.main module
- galaxy.main_config module
- galaxy.queue_worker module
send_local_control_task()
send_control_task()
ControlTask
reconfigure_watcher()
create_panel_section()
reload_tool()
reload_toolbox()
reload_data_managers()
reload_display_application()
reload_sanitize_allowlist()
recalculate_user_disk_usage()
reload_tool_data_tables()
rebuild_toolbox_search_index()
reload_job_rules()
reload_core_config()
reload_tour()
job_rule_modules()
admin_job_lock()
GalaxyQueueWorker
- galaxy.queues module
- galaxy.structured_app module
BasicSharedApp
MinimalToolApp
MinimalApp
MinimalManagerApp
MinimalManagerApp.carbon_intensity
MinimalManagerApp.file_sources
MinimalManagerApp.genome_builds
MinimalManagerApp.geographical_server_location_name
MinimalManagerApp.dataset_collection_manager
MinimalManagerApp.tool_data_tables
MinimalManagerApp.history_manager
MinimalManagerApp.hda_manager
MinimalManagerApp.workflow_manager
MinimalManagerApp.workflow_contents_manager
MinimalManagerApp.library_folder_manager
MinimalManagerApp.library_manager
MinimalManagerApp.role_manager
MinimalManagerApp.installed_repository_manager
MinimalManagerApp.user_manager
MinimalManagerApp.job_config
MinimalManagerApp.job_manager
MinimalManagerApp.job_metrics
MinimalManagerApp.dynamic_tool_manager
MinimalManagerApp.genomes
MinimalManagerApp.error_reports
MinimalManagerApp.notification_manager
MinimalManagerApp.object_store
MinimalManagerApp.tool_shed_registry
MinimalManagerApp.is_job_handler
MinimalManagerApp.wait_for_toolbox_reload()
StructuredApp
StructuredApp.amqp_internal_connection_obj
StructuredApp.dependency_resolvers_view
StructuredApp.container_finder
StructuredApp.tool_dependency_dir
StructuredApp.test_data_resolver
StructuredApp.trs_proxy
StructuredApp.vault
StructuredApp.webhooks_registry
StructuredApp.queue_worker
StructuredApp.data_provider_registry
StructuredApp.tool_data_tables
StructuredApp.tool_cache
StructuredApp.tool_shed_repository_cache
StructuredApp.watchers
StructuredApp.workflow_scheduling_manager
StructuredApp.interactivetool_manager
StructuredApp.api_keys_manager
StructuredApp.visualizations_registry
- galaxy.version module
- Subpackages
- galaxy_ext package
- galaxy_test package
- Subpackages
- galaxy_test.api package
- Subpackages
- Submodules
- galaxy_test.api.sharable module
- galaxy_test.api.test_authenticate module
- galaxy_test.api.test_configuration module
- galaxy_test.api.test_dataset_collections module
- galaxy_test.api.test_datasets module
- galaxy_test.api.test_datatypes module
- galaxy_test.api.test_display_applications module
- galaxy_test.api.test_folder_contents module
- galaxy_test.api.test_folders module
- galaxy_test.api.test_framework module
- galaxy_test.api.test_group_roles module
- galaxy_test.api.test_group_users module
- galaxy_test.api.test_groups module
- galaxy_test.api.test_histories module
- galaxy_test.api.test_history_contents module
- galaxy_test.api.test_history_contents_provenance module
- galaxy_test.api.test_jobs module
- galaxy_test.api.test_libraries module
- galaxy_test.api.test_licenses module
- galaxy_test.api.test_page_revisions module
- galaxy_test.api.test_pages module
- galaxy_test.api.test_roles module
- galaxy_test.api.test_search module
- galaxy_test.api.test_tool_data module
- galaxy_test.api.test_tools module
- galaxy_test.api.test_tools_upload module
- galaxy_test.api.test_tours module
- galaxy_test.api.test_users module
- galaxy_test.api.test_visualizations module
- galaxy_test.api.test_webhooks module
- galaxy_test.api.test_workflow_extraction module
- galaxy_test.api.test_workflows module
- galaxy_test.api.test_workflows_cwl module
- galaxy_test.api.test_workflows_from_yaml module
- galaxy_test.base package
- Submodules
- galaxy_test.base.api module
- galaxy_test.base.api_asserts module
- galaxy_test.base.api_util module
- galaxy_test.base.constants module
- galaxy_test.base.env module
- galaxy_test.base.instrument module
- galaxy_test.base.interactor module
- galaxy_test.base.populators module
- galaxy_test.base.rules_test_data module
- galaxy_test.base.testcase module
- galaxy_test.base.uses_shed module
- galaxy_test.base.workflow_fixtures module
- galaxy_test.driver package
- galaxy_test.performance package
- galaxy_test.selenium package
- Subpackages
- Submodules
- galaxy_test.selenium.conftest module
- galaxy_test.selenium.framework module
- galaxy_test.selenium.jupyter_context module
- galaxy_test.selenium.test_admin_app module
- galaxy_test.selenium.test_anon_history module
- galaxy_test.selenium.test_change_password module
- galaxy_test.selenium.test_collection_builders module
- galaxy_test.selenium.test_collection_edit module
- galaxy_test.selenium.test_custom_builds module
- galaxy_test.selenium.test_data_source_tools module
- galaxy_test.selenium.test_dataset_metadata_download module
- galaxy_test.selenium.test_histories_list module
- galaxy_test.selenium.test_history_copy_elements module
- galaxy_test.selenium.test_history_dataset_state module
- galaxy_test.selenium.test_history_export module
- galaxy_test.selenium.test_history_multi_view module
- galaxy_test.selenium.test_history_options module
- galaxy_test.selenium.test_history_panel module
- galaxy_test.selenium.test_history_panel_collections module
- galaxy_test.selenium.test_history_panel_pagination module
- galaxy_test.selenium.test_history_sharing module
- galaxy_test.selenium.test_history_structure module
- galaxy_test.selenium.test_invocation_grid module
- galaxy_test.selenium.test_jupyter module
- galaxy_test.selenium.test_library_contents module
- galaxy_test.selenium.test_library_landing module
- galaxy_test.selenium.test_library_to_collections module
- galaxy_test.selenium.test_login module
- galaxy_test.selenium.test_navigates_galaxy module
- galaxy_test.selenium.test_pages module
- galaxy_test.selenium.test_personal_information module
- galaxy_test.selenium.test_published_histories_grid module
- galaxy_test.selenium.test_registration module
- galaxy_test.selenium.test_sign_out module
- galaxy_test.selenium.test_sizzle_loading module
- galaxy_test.selenium.test_stock_tours module
- galaxy_test.selenium.test_tool_describing_tours module
- galaxy_test.selenium.test_tool_form module
- galaxy_test.selenium.test_uploads module
- galaxy_test.selenium.test_workflow_editor module
- galaxy_test.selenium.test_workflow_invocation_details module
- galaxy_test.selenium.test_workflow_management module
- galaxy_test.selenium.test_workflow_run module
- galaxy_test.selenium.test_workflow_sharing module
- galaxy_test.api package
- Submodules
- galaxy_test.conftest module
- Subpackages
- tool_shed package
- Subpackages
- tool_shed.dependencies package
- tool_shed.galaxy_install package
- tool_shed.grids package
- tool_shed.managers package
- tool_shed.metadata package
- tool_shed.repository_types package
- Submodules
- tool_shed.repository_types.metadata module
- tool_shed.repository_types.registry module
- tool_shed.repository_types.repository_suite_definition module
- tool_shed.repository_types.tool_dependency_definition module
- tool_shed.repository_types.unrestricted module
- tool_shed.repository_types.util module
- tool_shed.test package
- tool_shed.tools package
- tool_shed.util package
- Submodules
- tool_shed.util.admin_util module
- tool_shed.util.basic_util module
- tool_shed.util.commit_util module
- tool_shed.util.common_util module
- tool_shed.util.container_util module
- tool_shed.util.encoding_util module
- tool_shed.util.hg_util module
- tool_shed.util.hgweb_config module
- tool_shed.util.metadata_util module
- tool_shed.util.readme_util module
- tool_shed.util.repository_content_util module
- tool_shed.util.repository_util module
- tool_shed.util.review_util module
- tool_shed.util.search_util module
- tool_shed.util.shed_index module
- tool_shed.util.shed_util_common module
- tool_shed.util.tool_dependency_util module
- tool_shed.util.tool_util module
- tool_shed.util.web_util module
- tool_shed.util.xml_util module
- tool_shed.utility_containers package
FailedTest
InvalidRepositoryDependency
InvalidToolDependency
MissingTestComponent
NotTested
PassedTest
RepositoryInstallationError
RepositorySuccessfulInstallation
ToolDependencyInstallationError
ToolDependencySuccessfulInstallation
ToolShedUtilityContainerManager
- Submodules
- tool_shed.utility_containers.utility_container_manager module
- tool_shed.webapp package
- Submodules
- tool_shed.repository_registry module
RegistryInterface
NullRepositoryRegistry
Registry
Registry.__init__()
Registry.load()
Registry.add_category_entry()
Registry.add_entry()
Registry.edit_category_entry()
Registry.get_certified_level_one_clause_list()
Registry.get_certified_level_one_tuple()
Registry.is_level_one_certified()
Registry.is_valid()
Registry.load_certified_level_one_repository_and_suite_tuple()
Registry.load_repository_and_suite_tuple()
Registry.load_repository_and_suite_tuples()
Registry.load_viewable_repositories_and_suites_by_category()
Registry.remove_category_entry()
Registry.remove_entry()
Registry.sa_session
Registry.unload_certified_level_one_repository_and_suite_tuple()
Registry.unload_repository_and_suite_tuple()
get_repositories()
get_repositories_with_user()
get_certified_repositories_with_user()
- Subpackages