Warning
This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.
lib¶
- galaxy package
- Subpackages
- galaxy.actions package
- galaxy.auth package
- galaxy.authnz package
- galaxy.config package
- galaxy.containers package
- galaxy.datatypes package
- Subpackages
- Submodules
- galaxy.datatypes.annotation module
- galaxy.datatypes.anvio module
- galaxy.datatypes.assembly module
- galaxy.datatypes.binary module
- galaxy.datatypes.blast module
- galaxy.datatypes.checkers module
- galaxy.datatypes.chrominfo module
- galaxy.datatypes.constructive_solid_geometry module
- galaxy.datatypes.coverage module
- galaxy.datatypes.data module
- galaxy.datatypes.genetics module
- galaxy.datatypes.gis module
- galaxy.datatypes.graph module
- galaxy.datatypes.images module
- galaxy.datatypes.interval module
- galaxy.datatypes.isa module
- galaxy.datatypes.media module
- galaxy.datatypes.metadata module
- galaxy.datatypes.microarrays module
- galaxy.datatypes.molecules module
- galaxy.datatypes.mothur module
- galaxy.datatypes.msa module
- galaxy.datatypes.neo4j module
- galaxy.datatypes.ngsindex module
- galaxy.datatypes.phylip module
- galaxy.datatypes.plant_tribes module
- galaxy.datatypes.proteomics module
- galaxy.datatypes.qualityscore module
- galaxy.datatypes.registry module
- galaxy.datatypes.sequence module
- galaxy.datatypes.sniff module
- galaxy.datatypes.spaln module
- galaxy.datatypes.speech module
- galaxy.datatypes.tabular module
- galaxy.datatypes.text module
- galaxy.datatypes.tracks module
- galaxy.datatypes.triples module
- galaxy.datatypes.upload_util module
- galaxy.datatypes.xml module
- galaxy.dependencies package
- galaxy.eggs package
- galaxy.exceptions package
- galaxy.files package
- galaxy.forms package
- galaxy.job_execution package
- galaxy.job_metrics package
- galaxy.jobs package
- galaxy.managers package
- Submodules
- galaxy.managers.annotatable module
- galaxy.managers.api_keys module
- galaxy.managers.base module
- galaxy.managers.citations module
- galaxy.managers.cloud module
- galaxy.managers.cloudauthzs module
- galaxy.managers.collections module
- galaxy.managers.collections_util module
- galaxy.managers.configuration module
- galaxy.managers.containers module
- galaxy.managers.context module
- galaxy.managers.datasets module
- galaxy.managers.deletable module
- galaxy.managers.executables module
- galaxy.managers.folders module
- galaxy.managers.hdas module
- galaxy.managers.hdcas module
- galaxy.managers.histories module
- galaxy.managers.history_contents module
- galaxy.managers.interactivetool module
- galaxy.managers.jobs module
- galaxy.managers.lddas module
- galaxy.managers.libraries module
- galaxy.managers.library_datasets module
- galaxy.managers.licenses module
- galaxy.managers.markdown_parse module
- galaxy.managers.markdown_util module
- galaxy.managers.pages module
- galaxy.managers.ratable module
- galaxy.managers.rbac_secured module
- galaxy.managers.roles module
- galaxy.managers.secured module
- galaxy.managers.session module
- galaxy.managers.sharable module
- galaxy.managers.taggable module
- galaxy.managers.tools module
- galaxy.managers.users module
- galaxy.managers.visualizations module
- galaxy.managers.workflows module
- galaxy.metadata package
- galaxy.model package
- Subpackages
- Submodules
- galaxy.model.base module
- galaxy.model.custom_types module
- galaxy.model.database_heartbeat module
- galaxy.model.item_attrs module
- galaxy.model.mapping module
- galaxy.model.metadata module
- galaxy.model.none_like module
- galaxy.model.search module
- galaxy.model.security module
- galaxy.model.tags module
- galaxy.model.triggers module
- galaxy.objectstore package
- galaxy.openid package
- galaxy.quota package
- galaxy.schema package
- galaxy.security package
- galaxy.selenium package
- Subpackages
- Submodules
- galaxy.selenium.cli module
- galaxy.selenium.components module
- galaxy.selenium.context module
- galaxy.selenium.data module
- galaxy.selenium.driver_factory module
- galaxy.selenium.has_driver module
- galaxy.selenium.navigates_galaxy module
- galaxy.selenium.sizzle module
- galaxy.selenium.smart_components module
- galaxy.tool_shed package
- galaxy.tool_util package
- galaxy.tools package
- Subpackages
- Submodules
- galaxy.tools.cache module
- galaxy.tools.data_fetch module
- galaxy.tools.errors module
- galaxy.tools.evaluation module
- galaxy.tools.exception_handling module
- galaxy.tools.execute module
- galaxy.tools.recommendations module
- galaxy.tools.repositories module
- galaxy.tools.special_tools module
- galaxy.tools.test module
- galaxy.tools.wrappers module
- galaxy.tours package
- galaxy.util package
- Subpackages
- Submodules
- galaxy.util.aliaspickler module
- galaxy.util.bunch module
- galaxy.util.bytesize module
- galaxy.util.checkers module
- galaxy.util.commands module
- galaxy.util.compression_utils module
- galaxy.util.dbkeys module
- galaxy.util.dictifiable module
- galaxy.util.expressions module
- galaxy.util.facts module
- galaxy.util.filelock module
- galaxy.util.form_builder module
- galaxy.util.getargspec module
- galaxy.util.hash_util module
- galaxy.util.heartbeat module
- galaxy.util.image_util module
- galaxy.util.inflection module
- galaxy.util.json module
- galaxy.util.jstree module
- galaxy.util.lazy_process module
- galaxy.util.monitors module
- galaxy.util.object_wrapper module
- galaxy.util.odict module
- galaxy.util.oset module
- galaxy.util.permutations module
- galaxy.util.plugin_config module
- galaxy.util.properties module
- galaxy.util.renamed_temporary_file module
- galaxy.util.rules_dsl module
- galaxy.util.sanitize_html module
- galaxy.util.script module
- galaxy.util.search module
- galaxy.util.simplegraph module
- galaxy.util.sleeper module
- galaxy.util.sockets module
- galaxy.util.specs module
- galaxy.util.sqlite module
- galaxy.util.submodules module
- galaxy.util.template module
- galaxy.util.tool_version module
- galaxy.util.topsort module
- galaxy.util.ucsc module
- galaxy.util.validation module
- galaxy.util.watcher module
- galaxy.util.web_compat module
- galaxy.util.xml_macros module
- galaxy.util.yaml_util module
- galaxy.util.zipstream module
- galaxy.visualization package
- galaxy.web package
- galaxy.web_stack package
- galaxy.webapps package
- galaxy.webhooks package
- galaxy.work package
- galaxy.workflow package
- Submodules
- galaxy.app module
- galaxy.config_watchers module
- galaxy.main module
- galaxy.queue_worker module
- galaxy.queues module
- galaxy.version module
- Subpackages
- galaxy_ext package
- galaxy_test package
- Subpackages
- galaxy_test.api package
- Submodules
- galaxy_test.api.test_api_batch module
- galaxy_test.api.test_authenticate module
- galaxy_test.api.test_configuration module
- galaxy_test.api.test_dataset_collections module
- galaxy_test.api.test_datasets module
- galaxy_test.api.test_datatypes module
- galaxy_test.api.test_framework module
- galaxy_test.api.test_galaxy_interactor module
- galaxy_test.api.test_histories module
- galaxy_test.api.test_history_contents module
- galaxy_test.api.test_history_contents_provenance module
- galaxy_test.api.test_jobs module
- galaxy_test.api.test_libraries module
- galaxy_test.api.test_licenses module
- galaxy_test.api.test_page_revisions module
- galaxy_test.api.test_pages module
- galaxy_test.api.test_roles module
- galaxy_test.api.test_search module
- galaxy_test.api.test_tool_data module
- galaxy_test.api.test_tools module
- galaxy_test.api.test_tools_upload module
- galaxy_test.api.test_tours module
- galaxy_test.api.test_users module
- galaxy_test.api.test_visualizations module
- galaxy_test.api.test_webhooks module
- galaxy_test.api.test_workflow_extraction module
- galaxy_test.api.test_workflows module
- galaxy_test.api.test_workflows_from_yaml module
- galaxy_test.base package
- Submodules
- galaxy_test.base.api module
- galaxy_test.base.api_asserts module
- galaxy_test.base.api_util module
- galaxy_test.base.constants module
- galaxy_test.base.env module
- galaxy_test.base.instrument module
- galaxy_test.base.interactor module
- galaxy_test.base.nose_util module
- galaxy_test.base.populators module
- galaxy_test.base.rules_test_data module
- galaxy_test.base.ssh_util module
- galaxy_test.base.testcase module
- galaxy_test.base.workflow_fixtures module
- galaxy_test.driver package
- galaxy_test.selenium package
- Submodules
- galaxy_test.selenium.framework module
- galaxy_test.selenium.test_admin_app module
- galaxy_test.selenium.test_anon_history module
- galaxy_test.selenium.test_change_password module
- galaxy_test.selenium.test_collection_builders module
- galaxy_test.selenium.test_custom_builds module
- galaxy_test.selenium.test_histories_list module
- galaxy_test.selenium.test_history_copy_elements module
- galaxy_test.selenium.test_history_dataset_state module
- galaxy_test.selenium.test_history_multi_view module
- galaxy_test.selenium.test_history_options module
- galaxy_test.selenium.test_history_panel module
- galaxy_test.selenium.test_history_panel_collections module
- galaxy_test.selenium.test_history_panel_pagination module
- galaxy_test.selenium.test_history_sharing module
- galaxy_test.selenium.test_history_structure module
- galaxy_test.selenium.test_jupyter module
- galaxy_test.selenium.test_library_contents module
- galaxy_test.selenium.test_library_landing module
- galaxy_test.selenium.test_library_to_collections module
- galaxy_test.selenium.test_login module
- galaxy_test.selenium.test_navigates_galaxy module
- galaxy_test.selenium.test_pages module
- galaxy_test.selenium.test_personal_information module
- galaxy_test.selenium.test_published_histories_grid module
- galaxy_test.selenium.test_registration module
- galaxy_test.selenium.test_sign_out module
- galaxy_test.selenium.test_sizzle_loading module
- galaxy_test.selenium.test_stock_tours module
- galaxy_test.selenium.test_tool_describing_tours module
- galaxy_test.selenium.test_tool_form module
- galaxy_test.selenium.test_uploads module
- galaxy_test.selenium.test_workflow_editor module
- galaxy_test.selenium.test_workflow_management module
- galaxy_test.selenium.test_workflow_run module
- galaxy_test.api package
- Subpackages
- tool_shed package
- Subpackages
- tool_shed.dependencies package
- tool_shed.galaxy_install package
- tool_shed.grids package
- tool_shed.managers package
- tool_shed.metadata package
- tool_shed.repository_types package
- Submodules
- tool_shed.repository_types.metadata module
- tool_shed.repository_types.registry module
- tool_shed.repository_types.repository_suite_definition module
- tool_shed.repository_types.tool_dependency_definition module
- tool_shed.repository_types.unrestricted module
- tool_shed.repository_types.util module
- tool_shed.test package
- tool_shed.tools package
- tool_shed.util package
- Submodules
- tool_shed.util.admin_util module
- tool_shed.util.basic_util module
- tool_shed.util.commit_util module
- tool_shed.util.common_util module
- tool_shed.util.container_util module
- tool_shed.util.encoding_util module
- tool_shed.util.hg_util module
- tool_shed.util.hgweb_config module
- tool_shed.util.metadata_util module
- tool_shed.util.readme_util module
- tool_shed.util.repository_content_util module
- tool_shed.util.repository_util module
- tool_shed.util.review_util module
- tool_shed.util.search_util module
- tool_shed.util.shed_index module
- tool_shed.util.shed_util_common module
- tool_shed.util.tool_dependency_util module
- tool_shed.util.tool_util module
- tool_shed.util.web_util module
- tool_shed.util.xml_util module
- tool_shed.utility_containers package
- tool_shed.webapp package
- Submodules
- tool_shed.repository_registry module
- Subpackages