lib
- galaxy package
- Subpackages
- galaxy.actions package
- galaxy.app_unittest_utils package
- galaxy.auth package
- galaxy.authnz package
- galaxy.celery package
- galaxy.config package
LOGGING_CONFIG_DEFAULTDEPENDENT_CONFIG_DEFAULTSconfigure_logging()find_root()expand_pretty_datetime_format()BaseAppConfigurationCommonConfigurationMixinGalaxyAppConfigurationConfigurationreload_config_options()get_database_engine_options()- Submodules
- galaxy.config.config_manage module
- galaxy.config.schema module
- galaxy.config.script module
- galaxy.datatypes package
- Subpackages
- Submodules
- galaxy.datatypes.annotation module
- galaxy.datatypes.anvio module
- galaxy.datatypes.assembly module
- galaxy.datatypes.binary module
- galaxy.datatypes.blast module
- galaxy.datatypes.checkers module
- galaxy.datatypes.chrominfo module
- galaxy.datatypes.constructive_solid_geometry module
- galaxy.datatypes.coverage module
- galaxy.datatypes.data module
- galaxy.datatypes.flow module
- galaxy.datatypes.genetics module
- galaxy.datatypes.gis module
- galaxy.datatypes.goldenpath module
- galaxy.datatypes.graph module
- galaxy.datatypes.hdf5 module
- galaxy.datatypes.images module
- galaxy.datatypes.interval module
- galaxy.datatypes.isa module
- galaxy.datatypes.media module
- galaxy.datatypes.metacyto module
- galaxy.datatypes.metadata module
- galaxy.datatypes.microarrays module
- galaxy.datatypes.molecules module
- galaxy.datatypes.mothur module
- galaxy.datatypes.msa module
- galaxy.datatypes.neo4j module
- galaxy.datatypes.ngsindex module
- galaxy.datatypes.phylip module
- galaxy.datatypes.plant_tribes module
- galaxy.datatypes.proteomics module
- galaxy.datatypes.qiime2 module
- galaxy.datatypes.qualityscore module
- galaxy.datatypes.registry module
- galaxy.datatypes.sequence module
- galaxy.datatypes.sniff module
- galaxy.datatypes.spaln module
- galaxy.datatypes.speech module
- galaxy.datatypes.tabular module
- galaxy.datatypes.text module
- galaxy.datatypes.tracks module
- galaxy.datatypes.triples module
- galaxy.datatypes.upload_util module
- galaxy.datatypes.xml module
- galaxy.dependencies package
- galaxy.exceptions package
MessageExceptionItemDeletionExceptionObjectInvalidAcceptedRetryLaterNoContentExceptionActionInputErrorDuplicatedSlugExceptionDuplicatedIdentifierExceptionObjectAttributeInvalidExceptionObjectAttributeMissingExceptionMalformedIdUserInvalidRunAsExceptionMalformedContentsUnknownContentsTypeRequestParameterMissingExceptionToolMetaParameterExceptionToolMissingExceptionRequestParameterInvalidExceptionToolInputsNotReadyExceptionToolInputsNotOKExceptionRealUserRequiredExceptionAuthenticationFailedAuthenticationRequiredItemAccessibilityExceptionItemOwnershipExceptionItemImmutableExceptionConfigDoesNotAllowExceptionInsufficientPermissionsExceptionUserCannotRunAsExceptionUserRequiredExceptionAdminRequiredExceptionUserActivationRequiredExceptionObjectNotFoundConflictDeprecatedMethodConfigurationErrorInconsistentDatabaseInternalServerErrorToolExecutionErrorNotImplementedInvalidFileFormatErrorReferenceDataErrorServerNotConfiguredForRequestHandlerAssignmentError- Submodules
- galaxy.exceptions.error_codes module
- galaxy.files package
FileSourcePathFileSourceScoreNoMatchingFileSourceUserDefinedFileSourcesNullUserDefinedFileSourcesConfiguredFileSourcesConfConfiguredFileSourcesNullConfiguredFileSourcesDictifiableFilesSourceContextFileSourceDictifiableFileSourcesUserContextProvidesFileSourcesUserContextDictFileSourcesUserContext- Subpackages
- Submodules
- galaxy.files.uris module
- galaxy.forms package
- galaxy.job_execution package
- galaxy.job_metrics package
- galaxy.jobs package
JobDestinationNoopQueueJobToolConfigurationJobConfigurationJobWrapperTaskWrapper- Subpackages
- Submodules
- galaxy.jobs.command_factory module
- galaxy.jobs.dynamic_tool_destination module
- galaxy.jobs.handler module
- galaxy.jobs.manager module
- galaxy.jobs.mapper module
- galaxy.jobs.rule_helper module
- galaxy.jobs.stock_rules module
- galaxy.managers package
- Submodules
- galaxy.managers.annotatable module
- galaxy.managers.api_keys module
- galaxy.managers.base module
- galaxy.managers.citations module
- galaxy.managers.cloud module
- galaxy.managers.cloudauthzs module
- galaxy.managers.collections module
- galaxy.managers.collections_util module
- galaxy.managers.configuration module
- galaxy.managers.context module
- galaxy.managers.datasets module
- galaxy.managers.datatypes module
- galaxy.managers.deletable module
- galaxy.managers.display_applications module
- galaxy.managers.executables module
- galaxy.managers.folders module
- galaxy.managers.genomes module
- galaxy.managers.group_roles module
- galaxy.managers.group_users module
- galaxy.managers.groups module
- galaxy.managers.hdas module
- galaxy.managers.hdcas module
- galaxy.managers.histories module
- galaxy.managers.history_contents module
- galaxy.managers.interactivetool module
- galaxy.managers.jobs module
- galaxy.managers.lddas module
- galaxy.managers.libraries module
- galaxy.managers.library_datasets module
- galaxy.managers.licenses module
- galaxy.managers.markdown_parse module
- galaxy.managers.markdown_util module
- galaxy.managers.metrics module
- galaxy.managers.model_stores module
- galaxy.managers.pages module
- galaxy.managers.quotas module
- galaxy.managers.ratable module
- galaxy.managers.rbac_secured module
- galaxy.managers.remote_files module
- galaxy.managers.roles module
- galaxy.managers.secured module
- galaxy.managers.session module
- galaxy.managers.sharable module
- galaxy.managers.taggable module
- galaxy.managers.tags module
- galaxy.managers.tool_data module
- galaxy.managers.tools module
- galaxy.managers.users module
- galaxy.managers.visualizations module
- galaxy.managers.workflows module
- galaxy.metadata package
- galaxy.model package
now()ConfigurationTemplateEnvironmentSecretConfigurationTemplateEnvironmentVariableTransformActionget_uuid()BaseRepresentByIdNoConverterExceptionConverterDependencyExceptionset_datatypes_registry()HasTagsSerializeFilesHandlerSerializationOptionsSerializableHasNameUsesCreateAndUpdateTimeWorkerProcesscached_id()JobLikecalculate_user_disk_usage_statements()calculate_disk_usage_per_objectstore()UserQuotaBasicUsageUserQuotaUsageUserObjectstoreUsageUserPasswordResetTokenDynamicToolBaseJobMetricJobMetricTextJobMetricNumericTaskMetricTextTaskMetricNumericIoDictsJobTaskJobParameterJobToInputDatasetAssociationJobToOutputDatasetAssociationJobToInputDatasetCollectionAssociationJobToInputDatasetCollectionElementAssociationJobToOutputDatasetCollectionAssociationJobToImplicitOutputDatasetCollectionAssociationJobToInputLibraryDatasetAssociationJobToOutputLibraryDatasetAssociationJobStateHistoryImplicitlyCreatedDatasetCollectionInputImplicitCollectionJobsImplicitCollectionJobsJobAssociationPostJobActionPostJobActionAssociationJobExternalOutputMetadataFakeDatasetAssociationJobExportHistoryArchiveJobImportHistoryArchiveStoreExportAssociationJobContainerAssociationInteractiveToolEntryPointGenomeIndexToolDataGroupUserGroupAssociationNotificationUserNotificationAssociationis_hda()HistoryAuditHistoryUserShareAssociationHistoryUserShareAssociationUserRoleAssociationGroupRoleAssociationRoleUserQuotaSourceUsageUserQuotaAssociationGroupQuotaAssociationQuotaDefaultQuotaAssociationDatasetPermissionsLibraryPermissionsLibraryFolderPermissionsLibraryDatasetPermissionsLibraryDatasetDatasetAssociationPermissionsDefaultUserPermissionsDefaultHistoryPermissionsStorableObjectsetup_global_object_store_for_models()DatasetDatasetSourceDatasetSourceHashDatasetHashdatatype_for_extension()DatasetInstanceHistoryDatasetAssociationHistoryDatasetAssociationHistoryHistoryDatasetAssociationDisplayAtAuthorizationHistoryDatasetAssociationSubsetLibraryLibraryFolderLibraryDatasetLibraryDatasetDatasetAssociationExtendedMetadataExtendedMetadataIndexLibraryInfoAssociationLibraryFolderInfoAssociationLibraryDatasetDatasetInfoAssociationImplicitlyConvertedDatasetAssociationInnerCollectionFilterDatasetCollectionDatasetCollectionInstanceHistoryDatasetCollectionAssociationLibraryDatasetCollectionAssociationDatasetCollectionElementEventGalaxySessionGalaxySessionToHistoryAssociationStoredWorkflowWorkflowWorkflowStepWorkflowStepInputWorkflowStepConnectionWorkflowOutputWorkflowCommentStoredWorkflowUserShareAssociationStoredWorkflowMenuEntryWorkflowInvocationWorkflowInvocationToSubworkflowInvocationAssociationWorkflowInvocationMessageEffectiveOutputWorkflowInvocationStepObjectStoresWorkflowInvocationStepWorkflowRequestInputParameterWorkflowRequestStepStateWorkflowRequestToInputDatasetAssociationWorkflowRequestToInputDatasetCollectionAssociationWorkflowRequestInputStepParameterWorkflowInvocationOutputDatasetAssociationWorkflowInvocationOutputDatasetCollectionAssociationWorkflowInvocationOutputValueWorkflowInvocationStepOutputDatasetAssociationWorkflowInvocationStepOutputDatasetCollectionAssociationMetadataFileFormDefinitionFormDefinitionCurrentFormValuesUserAddressPSAAssociationPSACodePSANoncePSAPartialUserAuthnzTokenCustosAuthnzTokenCloudAuthzPagePageRevisionPageUserShareAssociationVisualizationVisualizationRevisionVisualizationUserShareAssociationTagItemTagAssociationHistoryTagAssociationHistoryDatasetAssociationTagAssociationLibraryDatasetDatasetAssociationTagAssociationPageTagAssociationWorkflowStepTagAssociationStoredWorkflowTagAssociationVisualizationTagAssociationHistoryDatasetCollectionTagAssociationLibraryDatasetCollectionTagAssociationToolTagAssociationHistoryAnnotationAssociationHistoryDatasetAssociationAnnotationAssociationStoredWorkflowAnnotationAssociationWorkflowStepAnnotationAssociationPageAnnotationAssociationVisualizationAnnotationAssociationHistoryDatasetCollectionAssociationAnnotationAssociationLibraryDatasetCollectionAnnotationAssociationVaultItemRatingAssociationHistoryRatingAssociationHistoryDatasetAssociationRatingAssociationStoredWorkflowRatingAssociationPageRatingAssociationVisualizationRatingAssociationHistoryDatasetCollectionRatingAssociationLibraryDatasetCollectionRatingAssociationDataManagerHistoryAssociationDataManagerJobAssociationUserPreferenceUsesTemplatesAppConfigHasConfigSecretsHasConfigEnvironmentHasConfigTemplateUserObjectStoreUserFileSourceUserActionAPIKeyscopy_list()CleanupEventCleanupEventDatasetAssociationCleanupEventMetadataFileAssociationCleanupEventHistoryAssociationCleanupEventHistoryDatasetAssociationAssociationCleanupEventLibraryAssociationCleanupEventLibraryFolderAssociationCleanupEventLibraryDatasetAssociationCleanupEventLibraryDatasetDatasetAssociationAssociationCleanupEventImplicitlyConvertedDatasetAssociationAssociationCeleryUserRateLimitreceive_init()JobStateSummary- Subpackages
- Submodules
- galaxy.model.base module
- galaxy.model.custom_types module
- galaxy.model.database_heartbeat module
- galaxy.model.database_utils module
- galaxy.model.deferred module
- galaxy.model.index_filter_util module
- galaxy.model.item_attrs module
- galaxy.model.mapping module
- galaxy.model.metadata module
- galaxy.model.none_like module
- galaxy.model.scoped_session module
- galaxy.model.search module
- galaxy.model.security module
- galaxy.model.tags module
- galaxy.objectstore package
UserObjectStoreResolverBaseUserObjectStoreResolverObjectStoreBaseObjectStoreConcreteObjectStoreDiskObjectStoreNestedObjectStoreuser_object_store_configuration_to_config_dict()DistributedObjectStoreHierarchicalObjectStoreserialize_static_object_store_config()QuotaModelConcreteObjectStoreModeltype_to_object_store_class()build_test_object_store_from_user_config()build_object_store_from_config()UserObjectStoresAppConfigconcrete_object_store()local_extra_dirs()config_to_dict()QuotaSourceInfoDeviceSourceMapQuotaSourceMapObjectCreationProblemObjectCreationProblemSharingDisabledObjectCreationProblemStoreFullObjectStorePopulatorpersist_extra_files()persist_extra_files_for_dataset()- Subpackages
- Submodules
- galaxy.objectstore.azure_blob module
- galaxy.objectstore.cloud module
- galaxy.objectstore.irods module
- galaxy.objectstore.pithos module
- galaxy.objectstore.pulsar module
- galaxy.objectstore.s3 module
- galaxy.objectstore.s3_multipart_upload module
- galaxy.quota package
- galaxy.schema package
BootstrapAdminUserValueFilterQueryParamsPaginationQueryParamsFilterQueryParamsSerializationParamsPdfDocumentTypeAPIKeyModelpartial_model()- Submodules
- galaxy.schema.fetch_data module
- galaxy.schema.fields module
- galaxy.schema.remote_files module
- galaxy.schema.schema module
- galaxy.schema.tasks module
- galaxy.schema.types module
- galaxy.security package
- galaxy.selenium package
- Subpackages
- Submodules
- galaxy.selenium.cli module
- galaxy.selenium.components module
- galaxy.selenium.context module
- galaxy.selenium.data module
- galaxy.selenium.driver_factory module
- galaxy.selenium.has_driver module
- galaxy.selenium.jupyter_context module
- galaxy.selenium.navigates_galaxy module
- galaxy.selenium.sizzle module
- galaxy.selenium.smart_components module
- galaxy.tool_shed package
- galaxy.tool_util package
- galaxy.tools package
safe_updateget_safe_version()ToolNotFoundExceptioncreate_tool_from_source()create_tool_from_representation()NullToolTagManagerPersistentToolTagManagerToolBoxDefaultToolStateToolOutputParameterJSONToolExpressionToolDataSourceToolAsyncDataSourceToolDataDestinationToolSetMetadataToolExportHistoryToolImportHistoryToolInteractiveToolDataManagerToolDatabaseOperationToolUnzipCollectionToolZipCollectionToolCrossProductFlatCollectionToolCrossProductNestedCollectionToolBuildListCollectionToolExtractDatasetCollectionToolMergeCollectionToolFilterDatasetsToolFilterFailedDatasetsToolKeepSuccessDatasetsToolFilterEmptyDatasetsToolFilterNullToolFlattenToolSortToolHarmonizeToolRelabelFromFileToolApplyRulesToolTagFromFileToolFilterFromFileToolDuplicateFileToCollectionToolTracksterConfigSetParamActiontool_classBadValueInterruptedUpload- Subpackages
- Submodules
- galaxy.tools.biotools module
- galaxy.tools.cache module
- galaxy.tools.data_fetch module
- galaxy.tools.errors module
- galaxy.tools.evaluation module
- galaxy.tools.exception_handling module
- galaxy.tools.execute module
- galaxy.tools.recommendations module
- galaxy.tools.remote_tool_eval module
- galaxy.tools.repositories module
- galaxy.tools.special_tools module
- galaxy.tools.test module
- galaxy.tools.wrappers module
- galaxy.tours package
- galaxy.util package
ElementSubElement()ElementTreeXML()str_removeprefix()remove_protocol_from_url()is_binary()is_uuid()directory_hash_id()get_charset_from_http_headers()synchronized()iter_start_of_line()file_reader()chunk_iterable()unique_id()parse_xml()parse_xml_string()parse_xml_string_to_etree()xml_to_string()xml_element_compare()xml_element_list_compare()xml_element_to_dict()pretty_print_xml()get_file_size()shrink_stream_by_size()shrink_and_unicodify()shrink_string_by_size()pretty_print_time_interval()restore_text()sanitize_text()sanitize_lists_to_string()sanitize_param()sanitize_for_filename()find_instance_nested()mask_password_from_url()ready_name_for_url()which()in_directory()merge_sorted_iterables()Paramsxml_text()parse_resource_parameters()asbool()string_as_bool()string_as_bool_or_none()listify()commaify()unicodify()filesystem_safe_string()smart_str()strip_control_characters()object_to_string()string_to_object()clean_multiline_string()ParamsWithSpecscompare_urls()read_build_sites()relativize_symlinks()stringify_dictionary_keys()mkstemp_ln()umask_fix_perms()docstring_trim()metric_prefix()shorten_with_metric_prefix()nice_size()size_to_bytes()send_mail()force_symlink()unlink()move_merge()safe_str_cmp()galaxy_directory()in_packages()config_directories_from_setting()parse_int()parse_non_hex_float()build_url()url_get()is_url()check_github_api_response_rate_limit()download_to_file()stream_to_open_named_file()classpropertyExecutionTimerStructuredExecutionTimerenum_values()hex_to_lowercase_alphanum()lowercase_alphanum_to_hex()- Subpackages
- Submodules
- galaxy.util.aliaspickler module
- galaxy.util.bool_expressions module
- galaxy.util.bunch module
- galaxy.util.bytesize module
- galaxy.util.checkers module
- galaxy.util.commands module
- galaxy.util.compression_utils module
- galaxy.util.dbkeys module
- galaxy.util.dictifiable module
- galaxy.util.dynamic module
- galaxy.util.expressions module
- galaxy.util.facts module
- galaxy.util.filelock module
- galaxy.util.form_builder module
- galaxy.util.hash_util module
- galaxy.util.heartbeat module
- galaxy.util.image_util module
- galaxy.util.inflection module
- galaxy.util.json module
- galaxy.util.jstree module
- galaxy.util.lazy_process module
- galaxy.util.monitors module
- galaxy.util.odict module
- galaxy.util.oset module
- galaxy.util.permutations module
- galaxy.util.plugin_config module
- galaxy.util.properties module
- galaxy.util.renamed_temporary_file module
- galaxy.util.resources module
- galaxy.util.rules_dsl module
- galaxy.util.sanitize_html module
- galaxy.util.script module
- galaxy.util.search module
- galaxy.util.simplegraph module
- galaxy.util.sleeper module
- galaxy.util.sockets module
- galaxy.util.specs module
- galaxy.util.sqlite module
- galaxy.util.submodules module
- galaxy.util.task module
- galaxy.util.template module
- galaxy.util.tool_version module
- galaxy.util.topsort module
- galaxy.util.ucsc module
- galaxy.util.validation module
- galaxy.util.watcher module
- galaxy.util.xml_macros module
- galaxy.util.yaml_util module
- galaxy.util.zipstream module
- galaxy.visualization package
- galaxy.web package
do_not_cache()error()expose()expose_api()expose_api_anonymous()expose_api_anonymous_and_sessionless()expose_api_raw()expose_api_raw_anonymous()expose_api_raw_anonymous_and_sessionless()format_return_as_json()json()json_pretty()legacy_expose_api()legacy_expose_api_anonymous()legacy_expose_api_raw()legacy_expose_api_raw_anonymous()require_admin()require_login()url_for()- Subpackages
- Submodules
- galaxy.web.form_builder module
- galaxy.web.statsd_client module
- galaxy.web_stack package
ApplicationStackLogFilterApplicationStackWebApplicationStackGunicornApplicationStackWeblessApplicationStackapplication_stack_class()application_stack_instance()application_stack_log_filter()application_stack_log_formatter()register_postfork_function()get_app_kwds()- Submodules
- galaxy.web_stack.gunicorn_config module
- galaxy.web_stack.handlers module
- galaxy.web_stack.message module
- galaxy.web_stack.transport module
- galaxy.webapps package
- galaxy.webhooks package
- galaxy.work package
- galaxy.workflow package
- Submodules
- galaxy.app module
HaltableContainerSentryClientMixinMinimalGalaxyApplicationMinimalGalaxyApplication.modelMinimalGalaxyApplication.tool_cacheMinimalGalaxyApplication.job_configMinimalGalaxyApplication.toolbox_searchMinimalGalaxyApplication.container_finderMinimalGalaxyApplication.install_modelMinimalGalaxyApplication.object_storeMinimalGalaxyApplication.__init__()MinimalGalaxyApplication.configMinimalGalaxyApplication.configure_fluent_log()MinimalGalaxyApplication.wait_for_toolbox_reload()MinimalGalaxyApplication.toolboxMinimalGalaxyApplication.reindex_tool_search()MinimalGalaxyApplication.tool_dependency_dir
GalaxyManagerApplicationUniverseApplicationStatsdStructuredExecutionTimerExecutionTimerFactory
- galaxy.config_watchers module
ConfigWatchersConfigWatchers.__init__()ConfigWatchers.watchersConfigWatchers.change_state()ConfigWatchers.start()ConfigWatchers.shutdown()ConfigWatchers.update_watch_data_table_paths()ConfigWatchers.data_manager_configsConfigWatchers.tool_data_pathsConfigWatchers.tool_config_pathsConfigWatchers.job_rules_paths
- galaxy.di module
- galaxy.main module
- galaxy.main_config module
- galaxy.queue_worker module
send_local_control_task()send_control_task()ControlTaskreconfigure_watcher()create_panel_section()reload_tool()reload_toolbox()reload_data_managers()reload_display_application()reload_sanitize_allowlist()recalculate_user_disk_usage()reload_tool_data_tables()rebuild_toolbox_search_index()reload_job_rules()reload_core_config()reload_tour()job_rule_modules()admin_job_lock()GalaxyQueueWorker
- galaxy.queues module
- galaxy.structured_app module
BasicSharedAppMinimalToolAppMinimalAppMinimalManagerAppMinimalManagerApp.carbon_intensityMinimalManagerApp.file_sourcesMinimalManagerApp.genome_buildsMinimalManagerApp.geographical_server_location_nameMinimalManagerApp.dataset_collection_managerMinimalManagerApp.tool_data_tablesMinimalManagerApp.history_managerMinimalManagerApp.hda_managerMinimalManagerApp.workflow_managerMinimalManagerApp.workflow_contents_managerMinimalManagerApp.library_folder_managerMinimalManagerApp.library_managerMinimalManagerApp.role_managerMinimalManagerApp.installed_repository_managerMinimalManagerApp.user_managerMinimalManagerApp.job_configMinimalManagerApp.job_managerMinimalManagerApp.job_metricsMinimalManagerApp.dynamic_tool_managerMinimalManagerApp.genomesMinimalManagerApp.error_reportsMinimalManagerApp.notification_managerMinimalManagerApp.object_storeMinimalManagerApp.tool_shed_registryMinimalManagerApp.is_job_handlerMinimalManagerApp.wait_for_toolbox_reload()
StructuredAppStructuredApp.amqp_internal_connection_objStructuredApp.dependency_resolvers_viewStructuredApp.container_finderStructuredApp.tool_dependency_dirStructuredApp.test_data_resolverStructuredApp.trs_proxyStructuredApp.vaultStructuredApp.webhooks_registryStructuredApp.queue_workerStructuredApp.data_provider_registryStructuredApp.tool_data_tablesStructuredApp.tool_cacheStructuredApp.tool_shed_repository_cacheStructuredApp.watchersStructuredApp.workflow_scheduling_managerStructuredApp.interactivetool_managerStructuredApp.api_keys_managerStructuredApp.visualizations_registry
- galaxy.version module
- Subpackages
- galaxy_ext package
- galaxy_test package
- Subpackages
- galaxy_test.api package
- Subpackages
- Submodules
- galaxy_test.api.sharable module
- galaxy_test.api.test_authenticate module
- galaxy_test.api.test_configuration module
- galaxy_test.api.test_dataset_collections module
- galaxy_test.api.test_datasets module
- galaxy_test.api.test_datatypes module
- galaxy_test.api.test_display_applications module
- galaxy_test.api.test_folder_contents module
- galaxy_test.api.test_folders module
- galaxy_test.api.test_framework module
- galaxy_test.api.test_group_roles module
- galaxy_test.api.test_group_users module
- galaxy_test.api.test_groups module
- galaxy_test.api.test_histories module
- galaxy_test.api.test_history_contents module
- galaxy_test.api.test_history_contents_provenance module
- galaxy_test.api.test_jobs module
- galaxy_test.api.test_libraries module
- galaxy_test.api.test_licenses module
- galaxy_test.api.test_page_revisions module
- galaxy_test.api.test_pages module
- galaxy_test.api.test_roles module
- galaxy_test.api.test_search module
- galaxy_test.api.test_tool_data module
- galaxy_test.api.test_tools module
- galaxy_test.api.test_tools_upload module
- galaxy_test.api.test_tours module
- galaxy_test.api.test_users module
- galaxy_test.api.test_visualizations module
- galaxy_test.api.test_webhooks module
- galaxy_test.api.test_workflow_extraction module
- galaxy_test.api.test_workflows module
- galaxy_test.api.test_workflows_cwl module
- galaxy_test.api.test_workflows_from_yaml module
- galaxy_test.base package
- Submodules
- galaxy_test.base.api module
- galaxy_test.base.api_asserts module
- galaxy_test.base.api_util module
- galaxy_test.base.constants module
- galaxy_test.base.env module
- galaxy_test.base.instrument module
- galaxy_test.base.interactor module
- galaxy_test.base.populators module
- galaxy_test.base.rules_test_data module
- galaxy_test.base.testcase module
- galaxy_test.base.uses_shed module
- galaxy_test.base.workflow_fixtures module
- galaxy_test.driver package
- galaxy_test.performance package
- galaxy_test.selenium package
- Subpackages
- Submodules
- galaxy_test.selenium.conftest module
- galaxy_test.selenium.framework module
- galaxy_test.selenium.jupyter_context module
- galaxy_test.selenium.test_admin_app module
- galaxy_test.selenium.test_anon_history module
- galaxy_test.selenium.test_change_password module
- galaxy_test.selenium.test_collection_builders module
- galaxy_test.selenium.test_collection_edit module
- galaxy_test.selenium.test_custom_builds module
- galaxy_test.selenium.test_data_source_tools module
- galaxy_test.selenium.test_dataset_metadata_download module
- galaxy_test.selenium.test_histories_list module
- galaxy_test.selenium.test_history_copy_elements module
- galaxy_test.selenium.test_history_dataset_state module
- galaxy_test.selenium.test_history_export module
- galaxy_test.selenium.test_history_multi_view module
- galaxy_test.selenium.test_history_options module
- galaxy_test.selenium.test_history_panel module
- galaxy_test.selenium.test_history_panel_collections module
- galaxy_test.selenium.test_history_panel_pagination module
- galaxy_test.selenium.test_history_sharing module
- galaxy_test.selenium.test_history_structure module
- galaxy_test.selenium.test_invocation_grid module
- galaxy_test.selenium.test_jupyter module
- galaxy_test.selenium.test_library_contents module
- galaxy_test.selenium.test_library_landing module
- galaxy_test.selenium.test_library_to_collections module
- galaxy_test.selenium.test_login module
- galaxy_test.selenium.test_navigates_galaxy module
- galaxy_test.selenium.test_pages module
- galaxy_test.selenium.test_personal_information module
- galaxy_test.selenium.test_published_histories_grid module
- galaxy_test.selenium.test_registration module
- galaxy_test.selenium.test_sign_out module
- galaxy_test.selenium.test_sizzle_loading module
- galaxy_test.selenium.test_stock_tours module
- galaxy_test.selenium.test_tool_describing_tours module
- galaxy_test.selenium.test_tool_form module
- galaxy_test.selenium.test_uploads module
- galaxy_test.selenium.test_workflow_editor module
- galaxy_test.selenium.test_workflow_invocation_details module
- galaxy_test.selenium.test_workflow_management module
- galaxy_test.selenium.test_workflow_run module
- galaxy_test.selenium.test_workflow_sharing module
- galaxy_test.api package
- Submodules
- galaxy_test.conftest module
- Subpackages
- tool_shed package
- Subpackages
- tool_shed.dependencies package
- tool_shed.galaxy_install package
- tool_shed.grids package
- tool_shed.managers package
- tool_shed.metadata package
- tool_shed.repository_types package
- Submodules
- tool_shed.repository_types.metadata module
- tool_shed.repository_types.registry module
- tool_shed.repository_types.repository_suite_definition module
- tool_shed.repository_types.tool_dependency_definition module
- tool_shed.repository_types.unrestricted module
- tool_shed.repository_types.util module
- tool_shed.test package
- tool_shed.tools package
- tool_shed.util package
- Submodules
- tool_shed.util.admin_util module
- tool_shed.util.basic_util module
- tool_shed.util.commit_util module
- tool_shed.util.common_util module
- tool_shed.util.container_util module
- tool_shed.util.encoding_util module
- tool_shed.util.hg_util module
- tool_shed.util.hgweb_config module
- tool_shed.util.metadata_util module
- tool_shed.util.readme_util module
- tool_shed.util.repository_content_util module
- tool_shed.util.repository_util module
- tool_shed.util.review_util module
- tool_shed.util.search_util module
- tool_shed.util.shed_index module
- tool_shed.util.shed_util_common module
- tool_shed.util.tool_dependency_util module
- tool_shed.util.tool_util module
- tool_shed.util.web_util module
- tool_shed.util.xml_util module
- tool_shed.utility_containers package
FailedTestInvalidRepositoryDependencyInvalidToolDependencyMissingTestComponentNotTestedPassedTestRepositoryInstallationErrorRepositorySuccessfulInstallationToolDependencyInstallationErrorToolDependencySuccessfulInstallationToolShedUtilityContainerManager- Submodules
- tool_shed.utility_containers.utility_container_manager module
- tool_shed.webapp package
- Submodules
- tool_shed.repository_registry module
RegistryRegistry.__init__()Registry.load()Registry.add_category_entry()Registry.add_entry()Registry.edit_category_entry()Registry.get_certified_level_one_clause_list()Registry.get_certified_level_one_tuple()Registry.is_level_one_certified()Registry.is_valid()Registry.load_certified_level_one_repository_and_suite_tuple()Registry.load_repository_and_suite_tuple()Registry.load_repository_and_suite_tuples()Registry.load_viewable_repositories_and_suites_by_category()Registry.remove_category_entry()Registry.remove_entry()Registry.sa_sessionRegistry.unload_certified_level_one_repository_and_suite_tuple()Registry.unload_repository_and_suite_tuple()
get_repositories()get_repositories_with_user()get_certified_repositories_with_user()
- Subpackages