galaxy_test package
Subpackages
- galaxy_test.api package
- Subpackages
- Submodules
- galaxy_test.api.sharable module
SharingApiTests
SharingApiTests.api_name
SharingApiTests.create()
SharingApiTests.test_sharing_get_status()
SharingApiTests.test_sharing_access()
SharingApiTests.test_sharing_publish()
SharingApiTests.test_sharing_without_user()
SharingApiTests.test_sharing_with_user_id()
SharingApiTests.test_sharing_with_user_email()
SharingApiTests.test_update_sharing_with_users()
SharingApiTests.test_sharing_with_invalid_user()
SharingApiTests.test_set_slug()
- galaxy_test.api.test_authenticate module
- galaxy_test.api.test_configuration module
- galaxy_test.api.test_dataset_collections module
TestDatasetCollectionsApi
TestDatasetCollectionsApi.dataset_populator
TestDatasetCollectionsApi.setUp()
TestDatasetCollectionsApi.test_create_pair_from_history()
TestDatasetCollectionsApi.test_create_list_from_history()
TestDatasetCollectionsApi.test_create_list_of_existing_pairs()
TestDatasetCollectionsApi.test_create_list_of_new_pairs()
TestDatasetCollectionsApi.test_list_download()
TestDatasetCollectionsApi.test_pair_download()
TestDatasetCollectionsApi.test_list_pair_download()
TestDatasetCollectionsApi.test_list_list_download()
TestDatasetCollectionsApi.test_list_list_list_download()
TestDatasetCollectionsApi.test_download_non_english_characters()
TestDatasetCollectionsApi.test_hda_security()
TestDatasetCollectionsApi.test_dataset_collection_element_security()
TestDatasetCollectionsApi.test_enforces_unique_names()
TestDatasetCollectionsApi.test_upload_collection()
TestDatasetCollectionsApi.test_upload_nested()
TestDatasetCollectionsApi.test_upload_collection_from_url()
TestDatasetCollectionsApi.test_upload_collection_deferred()
TestDatasetCollectionsApi.test_upload_collection_failed_expansion_url()
TestDatasetCollectionsApi.test_collection_contents_security()
TestDatasetCollectionsApi.test_published_collection_contents_accessible()
TestDatasetCollectionsApi.test_collection_contents_invalid_collection()
TestDatasetCollectionsApi.test_show_dataset_collection()
TestDatasetCollectionsApi.test_show_dataset_collection_contents()
TestDatasetCollectionsApi.test_collection_contents_limit_offset()
TestDatasetCollectionsApi.test_collection_contents_empty_root()
TestDatasetCollectionsApi.test_get_suitable_converters_single_datatype()
TestDatasetCollectionsApi.test_get_suitable_converters_different_datatypes_matches()
TestDatasetCollectionsApi.test_get_suitable_converters_different_datatypes_no_matches()
TestDatasetCollectionsApi.test_collection_tools_tag_propagation()
- galaxy_test.api.test_datasets module
TestDatasetsApi
TestDatasetsApi.dataset_populator
TestDatasetsApi.setUp()
TestDatasetsApi.test_index()
TestDatasetsApi.test_index_using_keys()
TestDatasetsApi.test_index_order_by_size()
TestDatasetsApi.test_search_datasets()
TestDatasetsApi.test_search_by_tag()
TestDatasetsApi.test_search_by_tag_case_insensitive()
TestDatasetsApi.test_search_by_tool_id()
TestDatasetsApi.test_search_by_extension()
TestDatasetsApi.test_invalid_search()
TestDatasetsApi.test_search_returns_only_accessible()
TestDatasetsApi.test_show()
TestDatasetsApi.test_show_permission_denied()
TestDatasetsApi.test_admin_can_update_permissions()
TestDatasetsApi.test_display()
TestDatasetsApi.test_display_error_handling()
TestDatasetsApi.test_get_content_as_text()
TestDatasetsApi.test_get_content_as_text_with_compressed_text_data()
TestDatasetsApi.test_anon_get_content_as_text()
TestDatasetsApi.test_anon_private_get_content_as_text()
TestDatasetsApi.test_dataprovider_chunk()
TestDatasetsApi.test_bam_chunking_through_display_endpoint()
TestDatasetsApi.test_tabular_chunking_through_display_endpoint()
TestDatasetsApi.test_connectivity_table_chunking_through_display_endpoint()
TestDatasetsApi.test_head()
TestDatasetsApi.test_byte_range_support()
TestDatasetsApi.test_tag_change()
TestDatasetsApi.test_anon_tag_permissions()
TestDatasetsApi.test_update_datatype()
TestDatasetsApi.test_delete_cancels_job()
TestDatasetsApi.test_delete_cancels_job_with_query_params()
TestDatasetsApi.test_purge_does_not_reset_file_size()
TestDatasetsApi.test_delete_batch()
TestDatasetsApi.test_delete_batch_error()
TestDatasetsApi.test_composite_datatype_download()
TestDatasetsApi.test_compute_md5_on_primary_dataset()
TestDatasetsApi.test_compute_sha1_on_composite_dataset()
TestDatasetsApi.test_duplicated_hash_requests_on_primary()
TestDatasetsApi.test_duplicated_hash_requests_on_extra_files()
TestDatasetsApi.assert_hash_value()
TestDatasetsApi.test_storage_show()
TestDatasetsApi.test_storage_show_on_discarded()
TestDatasetsApi.test_storage_show_on_deferred()
TestDatasetsApi.test_display_application_link()
TestDatasetsApi.test_cannot_update_datatype_on_immutable_history()
- galaxy_test.api.test_datatypes module
TestDatatypesApi
TestDatatypesApi.test_index()
TestDatatypesApi.test_index_upload_only()
TestDatatypesApi.test_full_index()
TestDatatypesApi.test_mapping()
TestDatatypesApi.test_types_and_mapping()
TestDatatypesApi.test_sniffers()
TestDatatypesApi.test_converters()
TestDatatypesApi.test_converter_present_after_toolbox_reload()
TestDatatypesApi.test_edam_formats()
TestDatatypesApi.test_edam_data()
- galaxy_test.api.test_display_applications module
- galaxy_test.api.test_folder_contents module
TestFolderContentsApi
TestFolderContentsApi.dataset_populator
TestFolderContentsApi.setUp()
TestFolderContentsApi.test_create_hda_with_ldda_message()
TestFolderContentsApi.test_create_hdca_with_ldda_message()
TestFolderContentsApi.test_index()
TestFolderContentsApi.test_index_include_deleted()
TestFolderContentsApi.test_index_pagination()
TestFolderContentsApi.test_index_search_text()
TestFolderContentsApi.test_index_permissions()
TestFolderContentsApi.test_index_permissions_include_deleted()
TestFolderContentsApi.test_index_order_by()
- galaxy_test.api.test_folders module
TestFoldersApi
TestFoldersApi.dataset_populator
TestFoldersApi.setUp()
TestFoldersApi.test_create()
TestFoldersApi.test_list_library()
TestFoldersApi.test_create_without_name_raises_400()
TestFoldersApi.test_permissions()
TestFoldersApi.test_update()
TestFoldersApi.test_delete()
TestFoldersApi.test_undelete()
TestFoldersApi.test_import_folder_to_history()
TestFoldersApi.test_update_deleted_raise_403()
- galaxy_test.api.test_framework module
- galaxy_test.api.test_group_roles module
TestGroupRolesApi
TestGroupRolesApi.dataset_populator
TestGroupRolesApi.setUp()
TestGroupRolesApi.test_index()
TestGroupRolesApi.test_index_only_admin()
TestGroupRolesApi.test_index_unknown_group_raises_400()
TestGroupRolesApi.test_show()
TestGroupRolesApi.test_show_only_admin()
TestGroupRolesApi.test_show_unknown_raises_400()
TestGroupRolesApi.test_update()
TestGroupRolesApi.test_update_only_admin()
TestGroupRolesApi.test_delete()
TestGroupRolesApi.test_delete_only_admin()
TestGroupRolesApi.test_delete_unknown_raises_400()
- galaxy_test.api.test_group_users module
TestGroupUsersApi
TestGroupUsersApi.dataset_populator
TestGroupUsersApi.setUp()
TestGroupUsersApi.test_index()
TestGroupUsersApi.test_index_only_admin()
TestGroupUsersApi.test_index_unknown_group_raises_400()
TestGroupUsersApi.test_show()
TestGroupUsersApi.test_show_only_admin()
TestGroupUsersApi.test_show_unknown_raises_400()
TestGroupUsersApi.test_update()
TestGroupUsersApi.test_update_only_admin()
TestGroupUsersApi.test_delete()
TestGroupUsersApi.test_delete_only_admin()
TestGroupUsersApi.test_delete_unknown_raises_400()
- galaxy_test.api.test_groups module
TestGroupsApi
TestGroupsApi.dataset_populator
TestGroupsApi.setUp()
TestGroupsApi.test_create_valid()
TestGroupsApi.test_create_only_admin()
TestGroupsApi.test_create_invalid_params_raises_400()
TestGroupsApi.test_create_duplicated_name_raises_409()
TestGroupsApi.test_index()
TestGroupsApi.test_index_only_admin()
TestGroupsApi.test_show()
TestGroupsApi.test_show_only_admin()
TestGroupsApi.test_show_unknown_raises_400()
TestGroupsApi.test_update()
TestGroupsApi.test_update_only_admin()
TestGroupsApi.test_update_duplicating_name_raises_409()
TestGroupsApi.test_delete()
TestGroupsApi.test_delete_duplicating_name_raises_409()
TestGroupsApi.test_purge()
TestGroupsApi.test_purge_can_reuse_name()
- galaxy_test.api.test_histories module
BaseHistories
TestHistoriesApi
TestHistoriesApi.setUp()
TestHistoriesApi.test_create_history()
TestHistoriesApi.test_create_history_json()
TestHistoriesApi.test_show_history()
TestHistoriesApi.test_show_history_returns_expected_urls()
TestHistoriesApi.test_show_respects_view()
TestHistoriesApi.test_show_most_recently_used()
TestHistoriesApi.test_index_order()
TestHistoriesApi.test_index_query()
TestHistoriesApi.test_index_views()
TestHistoriesApi.test_index_search_mode_views()
TestHistoriesApi.test_index_case_insensitive_contains_query()
TestHistoriesApi.test_index_advanced_filter()
TestHistoriesApi.test_delete()
TestHistoriesApi.test_purge()
TestHistoriesApi.test_undelete()
TestHistoriesApi.test_update()
TestHistoriesApi.test_update_invalid_attribute()
TestHistoriesApi.test_update_invalid_types()
TestHistoriesApi.test_invalid_keys()
TestHistoriesApi.test_create_anonymous_fails()
TestHistoriesApi.test_create_without_session_fails()
TestHistoriesApi.test_create_tag()
TestHistoriesApi.test_copy_history()
TestHistoriesApi.test_import_from_model_store_dict()
TestHistoriesApi.test_anonymous_can_import_published()
TestHistoriesApi.test_immutable_history_update_fails()
TestHistoriesApi.test_immutable_history_cannot_add_datasets()
TestHistoriesApi.test_cannot_modify_tags_on_immutable_history()
TestHistoriesApi.test_histories_count()
ImportExportTests
ImportExportTests.task_based
ImportExportTests.test_import_export()
ImportExportTests.test_import_1901_histories()
ImportExportTests.test_import_export_include_deleted()
ImportExportTests.test_import_export_failed_job()
ImportExportTests.test_import_metadata_regeneration()
ImportExportTests.test_import_export_collection()
ImportExportTests.test_import_export_nested_collection()
TestImportExportHistory
TestSharingHistory
TestSharingHistory.api_name
TestSharingHistory.create()
TestSharingHistory.setUp()
TestSharingHistory.test_sharing_with_private_datasets()
TestSharingHistory.test_sharing_without_manage_permissions()
TestSharingHistory.test_sharing_empty_not_allowed()
TestSharingHistory.test_sharing_with_duplicated_users()
TestSharingHistory.test_sharing_private_history_makes_datasets_public()
TestArchivingHistoriesWithoutExportRecord
TestArchivingHistoriesWithoutExportRecord.setUp()
TestArchivingHistoriesWithoutExportRecord.test_archive()
TestArchivingHistoriesWithoutExportRecord.test_other_users_cannot_archive_history()
TestArchivingHistoriesWithoutExportRecord.test_restore()
TestArchivingHistoriesWithoutExportRecord.test_other_users_cannot_restore_history()
TestArchivingHistoriesWithoutExportRecord.test_archived_histories_index()
TestArchivingHistoriesWithoutExportRecord.test_archived_histories_filtering_and_sorting()
TestArchivingHistoriesWithoutExportRecord.test_archiving_an_archived_history_conflicts()
TestArchivingHistoriesWithoutExportRecord.test_archived_histories_are_not_listed_by_default()
- galaxy_test.api.test_history_contents module
TestHistoryContentsApi
TestHistoryContentsApi.dataset_populator
TestHistoryContentsApi.setUp()
TestHistoryContentsApi.test_index_hda_summary()
TestHistoryContentsApi.test_make_private_and_public()
TestHistoryContentsApi.test_set_permissions_add_admin_history_contents()
TestHistoryContentsApi.test_set_permissions_add_admin_datasets()
TestHistoryContentsApi.test_index_hda_all_details()
TestHistoryContentsApi.test_index_hda_detail_by_id()
TestHistoryContentsApi.test_index_detail_parameter_error()
TestHistoryContentsApi.test_view_and_keys_parameters_for_datasets()
TestHistoryContentsApi.test_view_and_keys_parameters_for_collections()
TestHistoryContentsApi.test_show_hda()
TestHistoryContentsApi.test_hda_copy()
TestHistoryContentsApi.test_inheritance_chain()
TestHistoryContentsApi.test_library_copy()
TestHistoryContentsApi.test_update()
TestHistoryContentsApi.test_update_batch()
TestHistoryContentsApi.test_update_batch_collections()
TestHistoryContentsApi.test_update_type_failures()
TestHistoryContentsApi.test_delete()
TestHistoryContentsApi.test_delete_anon()
TestHistoryContentsApi.test_delete_permission_denied()
TestHistoryContentsApi.test_purge()
TestHistoryContentsApi.test_dataset_collection_creation_on_contents()
TestHistoryContentsApi.test_dataset_collection_creation_on_typed_contents()
TestHistoryContentsApi.test_dataset_collection_create_from_exisiting_datasets_with_new_tags()
TestHistoryContentsApi.test_jobs_summary_simple_hdca()
TestHistoryContentsApi.test_jobs_summary_implicit_hdca()
TestHistoryContentsApi.test_dataset_collection_hide_originals()
TestHistoryContentsApi.test_update_dataset_collection()
TestHistoryContentsApi.test_update_batch_dataset_collection()
TestHistoryContentsApi.test_hdca_copy()
TestHistoryContentsApi.test_hdca_copy_with_new_dbkey()
TestHistoryContentsApi.test_hdca_copy_and_elements()
TestHistoryContentsApi.test_hdca_from_library_datasets()
TestHistoryContentsApi.test_hdca_from_inaccessible_library_datasets()
TestHistoryContentsApi.test_job_state_summary_field()
TestHistoryContentsApi.test_index_filter_by_type()
TestHistoryContentsApi.test_index_filter_by_name_ignores_case()
TestHistoryContentsApi.test_index_filter_by_related_items()
TestHistoryContentsApi.test_elements_datatypes_field()
TestHistoryContentsApi.test_cannot_run_tools_on_immutable_histories()
TestHistoryContentsApi.test_cannot_update_dataset_collection_on_immutable_history()
TestHistoryContentsApi.test_cannot_update_dataset_on_immutable_history()
TestHistoryContentsApiBulkOperation
TestHistoryContentsApiBulkOperation.setUp()
TestHistoryContentsApiBulkOperation.test_explicit_items_selection()
TestHistoryContentsApiBulkOperation.test_dynamic_query_selection()
TestHistoryContentsApiBulkOperation.test_bulk_operations()
TestHistoryContentsApiBulkOperation.test_purging_collection_should_purge_contents()
TestHistoryContentsApiBulkOperation.test_deleting_collection_should_delete_contents()
TestHistoryContentsApiBulkOperation.test_only_owner_can_apply_bulk_operations()
TestHistoryContentsApiBulkOperation.test_bulk_tag_changes()
TestHistoryContentsApiBulkOperation.test_bulk_dbkey_change()
TestHistoryContentsApiBulkOperation.test_bulk_dbkey_change_dataset_collection()
TestHistoryContentsApiBulkOperation.test_bulk_datatype_change()
TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_collection()
TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_should_skip_set_metadata_on_deferred_data()
TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_errors()
TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_auto()
TestHistoryContentsApiBulkOperation.test_index_returns_expected_total_matches()
TestHistoryContentsApiBulkOperation.test_index_with_stats_fails_with_non_orm_filters()
TestHistoryContentsApiBulkOperation.test_index_with_stats_has_extra_serialization()
- galaxy_test.api.test_history_contents_provenance module
- galaxy_test.api.test_jobs module
TestJobsApi
TestJobsApi.dataset_populator
TestJobsApi.setUp()
TestJobsApi.test_index()
TestJobsApi.test_system_details_admin_only()
TestJobsApi.test_admin_job_list()
TestJobsApi.test_job_list_collection_view()
TestJobsApi.test_job_list_default_view()
TestJobsApi.test_index_state_filter()
TestJobsApi.test_index_date_filter()
TestJobsApi.test_index_history()
TestJobsApi.test_index_workflow_and_invocation_filter()
TestJobsApi.test_index_workflow_filter_implicit_jobs()
TestJobsApi.test_index_limit_and_offset_filter()
TestJobsApi.test_index_search_filter_tool_id()
TestJobsApi.test_index_search_filter_email()
TestJobsApi.test_index_user_filter()
TestJobsApi.test_index_handler_runner_filters()
TestJobsApi.test_index_multiple_states_filter()
TestJobsApi.test_show()
TestJobsApi.test_show_security()
TestJobsApi.test_unhide_on_error()
TestJobsApi.test_no_unhide_on_error_if_mapped_over()
TestJobsApi.test_no_hide_on_rerun()
TestJobsApi.test_rerun_exception_handling()
TestJobsApi.test_common_problems()
TestJobsApi.test_report_error()
TestJobsApi.test_report_error_anon()
TestJobsApi.test_report_error_bootstrap_admin()
TestJobsApi.test_deleting_output_keep_running_until_all_deleted()
TestJobsApi.test_purging_output_keep_running_until_all_purged()
TestJobsApi.test_submission_on_collection_with_deleted_element()
TestJobsApi.test_purging_output_cleaned_after_ok_run()
TestJobsApi.test_resume_job()
TestJobsApi.test_search()
TestJobsApi.test_search_handle_identifiers()
TestJobsApi.test_search_delete_outputs()
TestJobsApi.test_implicit_collection_jobs()
TestJobsApi.test_search_with_hdca_list_input()
TestJobsApi.test_search_delete_hdca_output()
TestJobsApi.test_search_with_hdca_pair_input()
TestJobsApi.test_search_with_hdca_list_pair_input()
TestJobsApi.test_search_with_hdca_list_pair_collection_mapped_over_pair_input()
TestJobsApi.test_job_build_for_rerun()
TestJobsApi.test_dce_submission_security()
TestJobsApi.test_job_build_for_rerun_list_list()
TestJobsApi.test_get_inputs_and_outputs()
TestJobsApi.test_delete_job()
TestJobsApi.test_destination_params()
TestJobsApi.test_job_metrics()
TestJobsApi.test_parameters_display()
- galaxy_test.api.test_libraries module
TestLibrariesApi
TestLibrariesApi.dataset_populator
TestLibrariesApi.setUp()
TestLibrariesApi.test_create()
TestLibrariesApi.test_create_from_store()
TestLibrariesApi.test_index()
TestLibrariesApi.test_delete()
TestLibrariesApi.test_nonadmin()
TestLibrariesApi.test_update()
TestLibrariesApi.test_update_non_admins_with_permission()
TestLibrariesApi.test_create_private_library_legacy_permissions()
TestLibrariesApi.test_create_private_library_permissions()
TestLibrariesApi.test_get_library_current_permissions()
TestLibrariesApi.test_get_library_available_permissions()
TestLibrariesApi.test_get_library_available_permissions_with_query()
TestLibrariesApi.test_create_library_dataset_bootstrap_user()
TestLibrariesApi.test_create_dataset_denied()
TestLibrariesApi.test_create_dataset_bootstrap_admin_user()
TestLibrariesApi.test_show_private_dataset_permissions()
TestLibrariesApi.test_create_dataset()
TestLibrariesApi.test_fetch_upload_to_folder()
TestLibrariesApi.test_fetch_zip_to_folder()
TestLibrariesApi.test_fetch_single_url_to_folder()
TestLibrariesApi.test_fetch_single_url_with_invalid_datatype()
TestLibrariesApi.test_legacy_upload_unknown_datatype()
TestLibrariesApi.test_fetch_failed_validation()
TestLibrariesApi.test_fetch_url_archive_to_folder()
TestLibrariesApi.test_fetch_bagit_archive_to_folder()
TestLibrariesApi.test_create_dataset_in_folder()
TestLibrariesApi.test_create_dataset_in_subfolder()
TestLibrariesApi.test_update_dataset_in_folder()
TestLibrariesApi.test_update_dataset_tags()
TestLibrariesApi.test_invalid_update_dataset_in_folder()
TestLibrariesApi.test_detect_datatype_of_dataset_in_folder()
TestLibrariesApi.test_ldda_collection_import_to_history()
TestLibrariesApi.test_ldda_collection_import_to_history_hide_source()
TestLibrariesApi.test_import_paired_collection()
TestLibrariesApi.test_create_datasets_in_library_from_collection()
TestLibrariesApi.test_create_datasets_in_folder_from_collection()
- galaxy_test.api.test_licenses module
- galaxy_test.api.test_page_revisions module
- galaxy_test.api.test_pages module
BasePagesApiTestCase
TestPagesApi
TestPagesApi.api_name
TestPagesApi.create()
TestPagesApi.test_create()
TestPagesApi.test_create_from_report()
TestPagesApi.test_index()
TestPagesApi.test_400_on_index_deleted_shared()
TestPagesApi.test_index_deleted()
TestPagesApi.test_index_user_id_security()
TestPagesApi.test_index_user_published()
TestPagesApi.test_index_show_published()
TestPagesApi.test_index_show_shared_with_me()
TestPagesApi.test_index_show_shared_with_me_deleted()
TestPagesApi.test_index_owner()
TestPagesApi.test_index_ordering()
TestPagesApi.test_index_limit_offset()
TestPagesApi.test_index_search_slug()
TestPagesApi.test_index_search_title()
TestPagesApi.test_index_search_sharing_tags()
TestPagesApi.test_index_does_not_show_unavailable_pages()
TestPagesApi.test_cannot_create_pages_with_same_slug()
TestPagesApi.test_cannot_create_pages_with_invalid_slug()
TestPagesApi.test_cannot_create_page_with_invalid_content_format()
TestPagesApi.test_page_requires_name()
TestPagesApi.test_page_requires_slug()
TestPagesApi.test_delete()
TestPagesApi.test_400_on_delete_invalid_page_id()
TestPagesApi.test_403_on_delete_unowned_page()
TestPagesApi.test_400_on_invalid_id_encoding()
TestPagesApi.test_400_on_invalid_id_encoding_markdown()
TestPagesApi.test_400_on_invalid_embedded_content()
TestPagesApi.test_400_on_invalid_markdown_call()
TestPagesApi.test_show()
TestPagesApi.test_403_on_unowner_show()
TestPagesApi.test_501_on_download_pdf_when_service_unavailable()
TestPagesApi.test_pdf_when_service_available()
TestPagesApi.test_400_on_download_pdf_when_unsupported_content_format()
TestPagesApi.dataset_populator
TestPagesApi.host
TestPagesApi.port
TestPagesApi.url
TestPagesApi.keepOutdir
TestPagesApi.test_data_resolver
- galaxy_test.api.test_roles module
TestRolesApi
TestRolesApi.dataset_populator
TestRolesApi.setUp()
TestRolesApi.test_list_and_show()
TestRolesApi.test_create_invalid_params()
TestRolesApi.test_create_valid()
TestRolesApi.test_show_error_codes()
TestRolesApi.test_create_only_admin()
TestRolesApi.test_delete()
TestRolesApi.test_delete_duplicating_name_raises_409()
TestRolesApi.test_purge()
TestRolesApi.test_purge_can_reuse_name()
TestRolesApi.check_role_dict()
- galaxy_test.api.test_search module
- galaxy_test.api.test_tool_data module
TestToolDataApi
TestToolDataApi.test_admin_only()
TestToolDataApi.test_list()
TestToolDataApi.test_show()
TestToolDataApi.test_show_field()
TestToolDataApi.test_download_field_file()
TestToolDataApi.test_reload()
TestToolDataApi.test_show_unknown_raises_404()
TestToolDataApi.test_show_unknown_field_raises_404()
TestToolDataApi.test_reload_unknown_raises_404()
TestToolDataApi.test_download_field_unknown_file_raises_404()
TestToolDataApi.test_delete_without_payload_raises_400()
TestToolDataApi.test_delete_without_values_raises_400()
TestToolDataApi.test_delete_with_wrong_values_raises_400()
- galaxy_test.api.test_tools module
TestsTools
TestToolsApi
TestToolsApi.dataset_populator
TestToolsApi.setUp()
TestToolsApi.test_index()
TestToolsApi.test_search_cat()
TestToolsApi.test_search_trimmer()
TestToolsApi.test_search_grep()
TestToolsApi.test_no_panel_index()
TestToolsApi.test_requirements()
TestToolsApi.test_show_repeat()
TestToolsApi.test_show_conditional()
TestToolsApi.test_show_multi_data()
TestToolsApi.test_show_output_collection()
TestToolsApi.test_data_source_build_request()
TestToolsApi.test_legacy_biotools_xref_injection()
TestToolsApi.test_data_source_ok_request()
TestToolsApi.test_data_source_sniff_fastqsanger()
TestToolsApi.test_data_sources_block_file_parameters()
TestToolsApi.test_model_attributes_sanitization()
TestToolsApi.test_test_data_filepath_security()
TestToolsApi.test_test_data_admin_security()
TestToolsApi.test_data_table_requirement_annotated()
TestToolsApi.test_test_data_composite_output()
TestToolsApi.test_test_data_collection_two_paired()
TestToolsApi.test_test_data_collection_nested()
TestToolsApi.test_test_data_null_boolean_inputs()
TestToolsApi.test_test_data_yaml_tools()
TestToolsApi.test_test_data_download()
TestToolsApi.test_test_data_downloads_security()
TestToolsApi.test_test_data_download_composite()
TestToolsApi.test_convert_dataset_explicit_history()
TestToolsApi.test_convert_dataset_implicit_history()
TestToolsApi.test_convert_hdca()
TestToolsApi.test_unzip_collection()
TestToolsApi.test_unzip_nested()
TestToolsApi.test_zip_inputs()
TestToolsApi.test_collection_operation_dataset_input_permissions()
TestToolsApi.test_collection_operation_collection_input_permissions()
TestToolsApi.test_zip_list_inputs()
TestToolsApi.test_database_operation_tool_with_pending_inputs()
TestToolsApi.test_extract_dataset_invalid_element_identifier()
TestToolsApi.test_filter_failed_list()
TestToolsApi.test_filter_failed_list_paired()
TestToolsApi.test_apply_rules_1()
TestToolsApi.test_apply_rules_2()
TestToolsApi.test_apply_rules_3()
TestToolsApi.test_apply_rules_4()
TestToolsApi.test_apply_rules_5()
TestToolsApi.test_apply_rules_6()
TestToolsApi.test_dataset_hidden_after_job_finish()
TestToolsApi.test_multi_select_as_list()
TestToolsApi.test_multi_select_optional()
TestToolsApi.test_library_data_param()
TestToolsApi.test_multidata_param()
TestToolsApi.test_run_cat1()
TestToolsApi.test_run_cat1_use_cached_job()
TestToolsApi.test_run_cat1_listified_param()
TestToolsApi.test_run_by_versions()
TestToolsApi.test_test_by_versions()
TestToolsApi.test_show_with_wrong_tool_version_in_tool_id()
TestToolsApi.test_run_cat1_single_meta_wrapper()
TestToolsApi.test_guess_derived_permissions()
TestToolsApi.test_guess_derived_permissions_collections()
TestToolsApi.test_validation()
TestToolsApi.test_validation_empty_dataset()
TestToolsApi.test_validation_in_repeat()
TestToolsApi.test_select_legal_values()
TestToolsApi.test_column_legal_values()
TestToolsApi.test_collection_parameter()
TestToolsApi.test_paired_collection_output()
TestToolsApi.test_list_collection_output()
TestToolsApi.test_list_collection_output_format_source()
TestToolsApi.test_dynamic_list_output()
TestToolsApi.test_dynamic_list_output_datasets_in_failed_state()
TestToolsApi.test_nonadmin_users_cannot_create_tools()
TestToolsApi.test_dynamic_tool_1()
TestToolsApi.test_dynamic_tool_from_path()
TestToolsApi.test_dynamic_tool_no_id()
TestToolsApi.test_show_dynamic_tools()
TestToolsApi.test_show_tool_source_admin()
TestToolsApi.test_show_tool_source_denied()
TestToolsApi.test_tool_deactivate()
TestToolsApi.test_run_cat1_with_two_inputs()
TestToolsApi.test_bam_state_regression()
TestToolsApi.test_qc_messages()
TestToolsApi.test_multirun_cat1()
TestToolsApi.test_multirun_non_data_parameter()
TestToolsApi.test_multirun_in_repeat()
TestToolsApi.test_multirun_in_repeat_mismatch()
TestToolsApi.test_multirun_on_multiple_inputs()
TestToolsApi.test_multirun_on_multiple_inputs_unlinked()
TestToolsApi.test_dynamic_parameter_error_handling()
TestToolsApi.test_map_over_collection()
TestToolsApi.test_map_over_empty_collection()
TestToolsApi.test_map_over_with_output_format_actions()
TestToolsApi.test_map_over_with_nested_paired_output_format_actions()
TestToolsApi.test_map_over_with_output_filter_no_filtering()
TestToolsApi.test_map_over_with_output_filter_on_optional_input()
TestToolsApi.test_map_over_with_output_filter_one_filtered()
TestToolsApi.test_map_over_with_complex_output_actions()
TestToolsApi.test_map_over_with_discovered_output_collection_elements()
TestToolsApi.test_identifier_in_map()
TestToolsApi.test_identifier_outside_map()
TestToolsApi.test_list_selectable_in_multidata_input()
TestToolsApi.test_identifier_in_multiple_reduce()
TestToolsApi.test_identifier_map_over_multiple_input_in_conditional()
TestToolsApi.test_identifier_map_over_multiple_input_in_conditional_new_payload_form()
TestToolsApi.test_identifier_multiple_reduce_in_repeat_new_payload_form()
TestToolsApi.test_identifier_map_over_input_in_conditional()
TestToolsApi.test_identifier_multiple_reduce_in_conditional()
TestToolsApi.test_identifier_multiple_reduce_in_repeat()
TestToolsApi.test_identifier_single_in_repeat()
TestToolsApi.test_identifier_multiple_in_conditional()
TestToolsApi.test_identifier_with_multiple_normal_datasets()
TestToolsApi.test_identifier_with_data_collection()
TestToolsApi.test_identifier_in_actions()
TestToolsApi.test_map_over_nested_collections()
TestToolsApi.test_paired_input_map_over_nested_collections()
TestToolsApi.test_paired_input_conditional_map_over_nested_collections()
TestToolsApi.test_map_over_two_collections()
TestToolsApi.test_map_over_two_collections_unlinked()
TestToolsApi.test_map_over_collected_and_individual_datasets()
TestToolsApi.test_default_identifier_source_map_over()
TestToolsApi.test_map_over_collection_output()
TestToolsApi.test_cannot_map_over_incompatible_collections()
TestToolsApi.test_map_over_collection_structured_like()
TestToolsApi.test_map_over_collection_type_source()
TestToolsApi.test_reduce_collections_legacy()
TestToolsApi.test_reduce_collections()
TestToolsApi.test_implicit_reduce_with_mapping()
TestToolsApi.test_multi_param_column_nested_list()
TestToolsApi.test_multi_param_column_nested_list_fails_on_invalid_column()
TestToolsApi.test_implicit_conversion_and_reduce()
TestToolsApi.test_implicit_conversion_and_reduce_invalid_param()
TestToolsApi.test_reduce_collections_in_repeat()
TestToolsApi.test_reduce_collections_in_repeat_legacy()
TestToolsApi.test_reduce_multiple_lists_on_multi_data()
TestToolsApi.test_subcollection_mapping()
TestToolsApi.test_combined_mapping_and_subcollection_mapping()
TestToolsApi.test_group_tag_selection()
TestToolsApi.test_group_tag_selection_multiple()
TestToolsApi.test_galaxy_expression_tool_simplest()
TestToolsApi.test_galaxy_expression_tool_simple()
TestToolsApi.test_galaxy_expression_metadata()
TestToolsApi.test_run_deferred_dataset()
TestToolsApi.test_run_deferred_dataset_with_metadata_options_filter()
TestToolsApi.test_metadata_validator_on_deferred_input()
TestToolsApi.test_metadata_validator_can_fail_on_deferred_input()
TestToolsApi.test_run_deferred_mapping()
TestToolsApi.test_run_deferred_list_multi_data_reduction()
TestToolsApi.test_run_deferred_nested_list_input()
TestToolsApi.test_deferred_map_over_nested_collections()
dataset_to_param()
- galaxy_test.api.test_tools_upload module
TestToolsUpload
TestToolsUpload.dataset_populator
TestToolsUpload.setUp()
TestToolsUpload.test_upload1_paste()
TestToolsUpload.test_upload1_paste_bad_datatype()
TestToolsUpload.test_upload_posix_newline_fixes_by_default()
TestToolsUpload.test_fetch_posix_unaltered()
TestToolsUpload.test_upload_disable_posix_fix()
TestToolsUpload.test_fetch_post_lines_option()
TestToolsUpload.test_post_lines_trailing()
TestToolsUpload.test_post_lines_trailing_off()
TestToolsUpload.test_fetch_post_lines_trailing_off_by_default()
TestToolsUpload.test_fetch_post_lines_trailing_if_to_posix()
TestToolsUpload.test_upload_tab_to_space_off_by_default()
TestToolsUpload.test_fetch_tab_to_space_off_by_default()
TestToolsUpload.test_upload_tab_to_space()
TestToolsUpload.test_fetch_tab_to_space()
TestToolsUpload.test_fetch_tab_to_space_doesnt_swap_newlines()
TestToolsUpload.test_fetch_compressed_with_explicit_type()
TestToolsUpload.test_fetch_compressed_default()
TestToolsUpload.test_fetch_compressed_auto_decompress_target()
TestToolsUpload.test_upload_decompress_off_with_auto_by_default()
TestToolsUpload.test_upload_decompresses_if_uncompressed_type_selected()
TestToolsUpload.test_upload_decompress_off_if_compressed_type_selected()
TestToolsUpload.test_upload_auto_decompress_off()
TestToolsUpload.test_fetch_compressed_with_auto()
TestToolsUpload.test_rdata_not_decompressed()
TestToolsUpload.test_csv_upload()
TestToolsUpload.test_csv_upload_auto()
TestToolsUpload.test_csv_fetch()
TestToolsUpload.test_csv_sniff_fetch()
TestToolsUpload.test_image_upload_auto()
TestToolsUpload.test_newlines_stage_fetch()
TestToolsUpload.test_stage_object()
TestToolsUpload.test_stage_object_fetch()
TestToolsUpload.test_newlines_stage_fetch_configured()
TestToolsUpload.test_stage_fetch_decompress_true()
TestToolsUpload.test_stage_fetch_decompress_false()
TestToolsUpload.test_upload_multiple_mixed_success()
TestToolsUpload.test_fetch_bam_file_from_url_with_extension_set()
TestToolsUpload.test_fetch_html_from_url()
TestToolsUpload.test_abort_fetch_job()
TestToolsUpload.test_composite_datatype()
TestToolsUpload.test_composite_datatype_fetch()
TestToolsUpload.test_composite_datatype_stage_fetch()
TestToolsUpload.test_composite_datatype_pbed_stage_fetch()
TestToolsUpload.test_composite_datatype_stage_upload1()
TestToolsUpload.test_composite_datatype_space_to_tab()
TestToolsUpload.test_composite_datatype_posix_lines()
TestToolsUpload.test_composite_datatype_isatab()
TestToolsUpload.test_upload_composite_as_tar()
TestToolsUpload.test_upload_composite_as_tar_fetch()
TestToolsUpload.test_upload_composite_from_bad_tar()
TestToolsUpload.test_upload_dbkey()
TestToolsUpload.test_fetch_bam_file()
TestToolsUpload.test_upload_bam_file()
TestToolsUpload.test_fetch_metadata()
TestToolsUpload.test_upload_multiple_files_1()
TestToolsUpload.test_upload_multiple_files_2()
TestToolsUpload.test_upload_multiple_files_3()
TestToolsUpload.test_upload_multiple_files_no_dbkey()
TestToolsUpload.test_upload_multiple_files_space_to_tab()
TestToolsUpload.test_multiple_files_posix_lines()
TestToolsUpload.test_upload_force_composite()
TestToolsUpload.test_upload_from_invalid_url()
TestToolsUpload.test_upload_from_404_url()
TestToolsUpload.test_upload_from_valid_url()
TestToolsUpload.test_upload_from_valid_url_spaces()
TestToolsUpload.test_upload_and_validate_invalid()
TestToolsUpload.test_upload_and_validate_valid()
TestToolsUpload.test_upload_dataset_resumable()
TestToolsUpload.test_upload_deferred()
- galaxy_test.api.test_tours module
- galaxy_test.api.test_users module
TestUsersApi
TestUsersApi.test_index()
TestUsersApi.test_index_only_self_for_nonadmins()
TestUsersApi.test_show()
TestUsersApi.test_update()
TestUsersApi.test_admin_update()
TestUsersApi.test_delete_user()
TestUsersApi.test_purge_user()
TestUsersApi.test_undelete_user()
TestUsersApi.test_delete_user_cancel_all_jobs()
TestUsersApi.test_information()
TestUsersApi.test_manage_api_key()
TestUsersApi.test_only_admin_can_manage_other_users_api_key()
TestUsersApi.test_favorites()
TestUsersApi.test_search_favorites()
TestUsersApi.test_set_theme()
TestUsersApi.test_show_delete()
TestUsersApi.test_show_current()
TestUsersApi.test_manage_beacon_settings()
- galaxy_test.api.test_visualizations module
TestVisualizationsApi
TestVisualizationsApi.api_name
TestVisualizationsApi.create()
TestVisualizationsApi.test_index_and_show()
TestVisualizationsApi.test_index_ordering()
TestVisualizationsApi.test_index_filtering()
TestVisualizationsApi.test_create()
TestVisualizationsApi.test_create_fails_without_title()
TestVisualizationsApi.test_create_fails_with_bad_slug()
TestVisualizationsApi.test_create_fails_with_invalid_config()
TestVisualizationsApi.test_sharing()
TestVisualizationsApi.test_update_title()
- galaxy_test.api.test_webhooks module
- galaxy_test.api.test_workflow_extraction module
TestWorkflowExtractionApi
TestWorkflowExtractionApi.test_extract_from_history()
TestWorkflowExtractionApi.test_extract_with_copied_inputs()
TestWorkflowExtractionApi.test_extract_with_copied_inputs_reimported()
TestWorkflowExtractionApi.test_extract_mapping_workflow_from_history()
TestWorkflowExtractionApi.test_extract_copied_mapping_from_history()
TestWorkflowExtractionApi.test_extract_copied_mapping_from_history_reimported()
TestWorkflowExtractionApi.test_extract_reduction_from_history()
TestWorkflowExtractionApi.test_extract_workflows_with_dataset_collections()
TestWorkflowExtractionApi.test_empty_collection_map_over_extract_workflow()
TestWorkflowExtractionApi.test_subcollection_mapping()
TestWorkflowExtractionApi.test_subcollection_reduction()
TestWorkflowExtractionApi.test_extract_workflow_with_output_collections()
TestWorkflowExtractionApi.test_extract_with_mapped_output_collections()
TestWorkflowExtractionApi.dataset_populator
RunJobsSummary
- galaxy_test.api.test_workflows module
RunsWorkflowFixtures
BaseWorkflowsApiTestCase
ChangeDatatypeTests
TestWorkflowSharingApi
TestWorkflowsApi
TestWorkflowsApi.dataset_populator
TestWorkflowsApi.test_show_valid()
TestWorkflowsApi.test_show_subworkflow()
TestWorkflowsApi.test_show_invalid_key_is_400()
TestWorkflowsApi.test_cannot_show_private_workflow()
TestWorkflowsApi.test_cannot_download_private_workflow()
TestWorkflowsApi.test_anon_can_download_importable_workflow()
TestWorkflowsApi.test_anon_can_download_public_workflow()
TestWorkflowsApi.test_anon_can_see_workflow_preview()
TestWorkflowsApi.test_delete()
TestWorkflowsApi.test_other_cannot_delete()
TestWorkflowsApi.test_undelete()
TestWorkflowsApi.test_other_cannot_undelete()
TestWorkflowsApi.test_index()
TestWorkflowsApi.test_index_deleted()
TestWorkflowsApi.test_index_hidden()
TestWorkflowsApi.test_index_ordering()
TestWorkflowsApi.test_index_sort_by()
TestWorkflowsApi.test_index_limit_and_offset()
TestWorkflowsApi.test_index_show_shared()
TestWorkflowsApi.test_index_skip_step_counts()
TestWorkflowsApi.test_index_search()
TestWorkflowsApi.test_index_search_name()
TestWorkflowsApi.test_index_search_name_exact_vs_inexact()
TestWorkflowsApi.test_index_search_tags()
TestWorkflowsApi.test_index_search_tags_multiple()
TestWorkflowsApi.test_search_casing()
TestWorkflowsApi.test_index_search_tags_exact()
TestWorkflowsApi.test_index_published()
TestWorkflowsApi.test_index_search_is_tags()
TestWorkflowsApi.test_index_owner()
TestWorkflowsApi.test_index_parameter_invalid_combinations()
TestWorkflowsApi.test_index_total_matches()
TestWorkflowsApi.test_upload()
TestWorkflowsApi.test_upload_deprecated()
TestWorkflowsApi.test_import_tools_requires_admin()
TestWorkflowsApi.test_update()
TestWorkflowsApi.test_update_tags()
TestWorkflowsApi.test_update_name()
TestWorkflowsApi.test_update_name_for_workflow_with_subworkflows()
TestWorkflowsApi.test_update_name_empty()
TestWorkflowsApi.test_workflow_run_form_with_broken_dataset()
TestWorkflowsApi.test_refactor()
TestWorkflowsApi.test_refactor_tool_state_upgrade()
TestWorkflowsApi.test_update_no_tool_id()
TestWorkflowsApi.test_update_missing_tool()
TestWorkflowsApi.test_require_unique_step_uuids()
TestWorkflowsApi.test_require_unique_step_labels()
TestWorkflowsApi.test_import_deprecated()
TestWorkflowsApi.test_import_export_dynamic()
TestWorkflowsApi.test_import_annotations()
TestWorkflowsApi.test_import_subworkflows()
TestWorkflowsApi.test_subworkflow_inputs_optional_editor()
TestWorkflowsApi.test_not_importable_prevents_import()
TestWorkflowsApi.test_url_import()
TestWorkflowsApi.test_base64_import()
TestWorkflowsApi.test_trs_import()
TestWorkflowsApi.test_trs_import_from_dockstore_trs_url()
TestWorkflowsApi.test_trs_import_from_workflowhub_trs_url()
TestWorkflowsApi.test_anonymous_published()
TestWorkflowsApi.test_import_published()
TestWorkflowsApi.test_import_published_api()
TestWorkflowsApi.test_export()
TestWorkflowsApi.test_export_format2()
TestWorkflowsApi.test_export_editor()
TestWorkflowsApi.test_export_editor_filtered_outputs()
TestWorkflowsApi.test_export_editor_filtered_outputs_exception_handling()
TestWorkflowsApi.test_export_editor_collection_type_source()
TestWorkflowsApi.test_export_editor_subworkflow_collection_type_source()
TestWorkflowsApi.test_import_missing_tool()
TestWorkflowsApi.test_import_no_tool_id()
TestWorkflowsApi.test_import_export_with_runtime_inputs()
TestWorkflowsApi.test_run_workflow_by_index()
TestWorkflowsApi.test_run_workflow_by_uuid()
TestWorkflowsApi.test_run_workflow_by_uuid_implicitly()
TestWorkflowsApi.test_run_workflow_by_name()
TestWorkflowsApi.test_run_workflow()
TestWorkflowsApi.test_run_versioned_tools()
TestWorkflowsApi.test_workflow_run_output_collections()
TestWorkflowsApi.test_workflow_resume_from_failed_step()
TestWorkflowsApi.test_workflow_resume_from_failed_step_with_hdca_input()
TestWorkflowsApi.test_workflow_resume_with_mapped_over_input()
TestWorkflowsApi.test_workflow_resume_with_mapped_over_collection_input()
TestWorkflowsApi.test_workflow_list_list_multi_data_map_over()
TestWorkflowsApi.test_workflow_run_output_collection_mapping()
TestWorkflowsApi.test_workflow_run_dynamic_output_collections()
TestWorkflowsApi.test_workflow_run_dynamic_output_collections_2()
TestWorkflowsApi.test_workflow_run_dynamic_output_collections_3()
TestWorkflowsApi.test_workflow_input_tags()
TestWorkflowsApi.test_empty_file_data_column_specified()
TestWorkflowsApi.test_comma_separated_columns()
TestWorkflowsApi.test_comma_separated_columns_with_trailing_newline()
TestWorkflowsApi.test_runtime_data_column_parameter()
TestWorkflowsApi.test_workflow_metadata_validation_0()
TestWorkflowsApi.test_run_workflow_pick_value_bam_pja()
TestWorkflowsApi.test_run_workflow_simple_conditional_step()
TestWorkflowsApi.test_run_workflow_simple_conditional_step_with_nested_tool_state()
TestWorkflowsApi.test_run_workflow_invalid_when_expression()
TestWorkflowsApi.test_run_workflow_fails_when_expression_not_boolean()
TestWorkflowsApi.test_run_workflow_subworkflow_conditional_with_simple_mapping_step()
TestWorkflowsApi.test_run_workflow_subworkflow_conditional_step()
TestWorkflowsApi.test_run_nested_conditional_workflow_steps()
TestWorkflowsApi.test_run_workflow_conditional_subworkflow_step_with_hdca_creation()
TestWorkflowsApi.test_run_workflow_conditional_step_map_over_expression_tool()
TestWorkflowsApi.test_run_workflow_conditional_subworkflow_step_map_over_expression_tool()
TestWorkflowsApi.test_run_workflow_conditional_subworkflow_step_map_over_expression_tool_with_extra_nesting()
TestWorkflowsApi.test_run_workflow_conditional_subworkflow_step_map_over_expression_tool_with_extra_nesting_skip_all()
TestWorkflowsApi.test_run_workflow_conditional_step_map_over_expression_tool_pick_value()
TestWorkflowsApi.test_run_subworkflow_simple()
TestWorkflowsApi.test_run_subworkflow_runtime_parameters()
TestWorkflowsApi.test_run_subworkflow_replacement_parameters()
TestWorkflowsApi.test_placements_from_text_inputs()
TestWorkflowsApi.test_placements_from_text_inputs_nested()
TestWorkflowsApi.test_run_runtime_parameters_after_pause()
TestWorkflowsApi.test_run_subworkflow_auto_labels()
TestWorkflowsApi.test_workflow_run_zip_collections()
TestWorkflowsApi.test_workflow_flatten()
TestWorkflowsApi.test_workflow_flatten_with_mapped_over_execution()
TestWorkflowsApi.test_workflow_invocation_report_1()
TestWorkflowsApi.test_workflow_invocation_report_custom()
TestWorkflowsApi.test_export_invocation_bco()
TestWorkflowsApi.test_export_invocation_ro_crate()
TestWorkflowsApi.test_merge_collection_scheduling()
TestWorkflowsApi.test_export_invocation_ro_crate_adv()
TestWorkflowsApi.test_workflow_run_apply_rules()
TestWorkflowsApi.test_filter_failed_mapping()
TestWorkflowsApi.test_keep_success_mapping_error()
TestWorkflowsApi.test_keep_success_mapping_paused()
TestWorkflowsApi.test_workflow_request()
TestWorkflowsApi.test_workflow_new_autocreated_history()
TestWorkflowsApi.test_workflow_output_dataset()
TestWorkflowsApi.test_workflow_output_dataset_collection()
TestWorkflowsApi.test_workflow_input_as_output()
TestWorkflowsApi.test_subworkflow_output_as_output()
TestWorkflowsApi.test_workflow_input_mapping()
TestWorkflowsApi.test_workflow_run_input_mapping_with_output_collections()
TestWorkflowsApi.test_workflow_run_input_mapping_with_subworkflows()
TestWorkflowsApi.test_subworkflow_recover_mapping_1()
TestWorkflowsApi.test_subworkflow_recover_mapping_2()
TestWorkflowsApi.test_recover_mapping_in_subworkflow()
TestWorkflowsApi.test_empty_list_mapping()
TestWorkflowsApi.test_subworkflow_map_over_data_column()
TestWorkflowsApi.test_run_with_implicit_collection_map_over()
TestWorkflowsApi.test_change_datatype_collection_map_over()
TestWorkflowsApi.test_change_datatype_discovered_outputs()
TestWorkflowsApi.test_mapping_and_subcollection_mapping()
TestWorkflowsApi.test_empty_list_reduction()
TestWorkflowsApi.test_cancel_new_workflow_when_history_deleted()
TestWorkflowsApi.test_cancel_ready_workflow_when_history_deleted()
TestWorkflowsApi.test_workflow_pause()
TestWorkflowsApi.test_workflow_pause_cancel()
TestWorkflowsApi.test_workflow_map_reduce_pause()
TestWorkflowsApi.test_cancel_workflow_invocation()
TestWorkflowsApi.test_cancel_workflow_invocation_deletes_jobs()
TestWorkflowsApi.test_workflow_failed_output_not_found()
TestWorkflowsApi.test_workflow_warning_workflow_output_not_found()
TestWorkflowsApi.test_workflow_failed_input_not_ok()
TestWorkflowsApi.test_workflow_failed_with_message_exception()
TestWorkflowsApi.test_invocation_map_over()
TestWorkflowsApi.test_invocation_map_over_inner_collection()
TestWorkflowsApi.test_invocation_map_over_inner_collection_with_tool_collection_input()
TestWorkflowsApi.test_pause_outputs_with_deleted_inputs()
TestWorkflowsApi.test_error_outputs_with_purged_inputs()
TestWorkflowsApi.test_run_with_implicit_connection()
TestWorkflowsApi.test_run_with_optional_data_specified_to_multi_data()
TestWorkflowsApi.test_run_with_optional_data_unspecified_to_multi_data()
TestWorkflowsApi.test_run_with_optional_data_unspecified_survives_delayed_step()
TestWorkflowsApi.test_run_subworkflow_with_optional_data_unspecified()
TestWorkflowsApi.test_run_with_non_optional_data_unspecified_fails_invocation()
TestWorkflowsApi.test_run_with_optional_collection_specified()
TestWorkflowsApi.test_run_with_optional_collection_unspecified()
TestWorkflowsApi.test_run_with_non_optional_collection_unspecified_fails_invocation()
TestWorkflowsApi.test_run_with_validated_parameter_connection_optional()
TestWorkflowsApi.test_run_with_int_parameter()
TestWorkflowsApi.test_run_with_int_parameter_nested()
TestWorkflowsApi.test_run_with_validated_parameter_connection_default_values()
TestWorkflowsApi.test_run_with_default_file_dataset_input()
TestWorkflowsApi.test_run_with_default_file_dataset_input_and_explicit_input()
TestWorkflowsApi.test_run_with_default_file_in_step_inline()
TestWorkflowsApi.test_conditional_flat_crossproduct_subworkflow()
TestWorkflowsApi.test_run_with_validated_parameter_connection_invalid()
TestWorkflowsApi.test_run_with_text_input_connection()
TestWorkflowsApi.test_run_with_numeric_input_connection()
TestWorkflowsApi.test_expression_tool_map_over()
TestWorkflowsApi.test_workflow_optional_input_text_parameter_reevaluation()
TestWorkflowsApi.test_workflow_rerun_with_use_cached_job()
TestWorkflowsApi.test_workflow_rerun_with_cached_job_consumes_implicit_hdca()
TestWorkflowsApi.test_nested_workflow_rerun_with_use_cached_job()
TestWorkflowsApi.test_cannot_run_inaccessible_workflow()
TestWorkflowsApi.test_400_on_invalid_workflow_id()
TestWorkflowsApi.test_cannot_run_against_other_users_history()
TestWorkflowsApi.test_cannot_run_workflow_as_anon()
TestWorkflowsApi.test_cannot_run_bootstrap_admin_workflow()
TestWorkflowsApi.test_workflow_run_with_matching_lists()
TestWorkflowsApi.test_workflow_stability()
TestWorkflowsApi.test_empty_create()
TestWorkflowsApi.test_invalid_create_multiple_types()
TestWorkflowsApi.test_run_with_pja()
TestWorkflowsApi.test_hidden_param_in_workflow()
TestWorkflowsApi.test_optional_workflow_output()
TestWorkflowsApi.test_workflow_optional_input_filtering()
TestWorkflowsApi.test_run_rename_on_mapped_over_collection()
TestWorkflowsApi.test_run_rename_based_on_inputs_on_mapped_over_collection()
TestWorkflowsApi.test_run_rename_collection_output()
TestWorkflowsApi.test_run_build_list_hide_collection_output()
TestWorkflowsApi.test_run_build_list_delete_intermediate_collection_output()
TestWorkflowsApi.test_run_build_list_change_datatype_collection_output()
TestWorkflowsApi.test_run_build_list_change_datatype_new_metadata_file_parameter()
TestWorkflowsApi.test_run_build_list_rename_collection_output()
TestWorkflowsApi.test_run_rename_multiple_outputs()
TestWorkflowsApi.test_run_rename_based_on_input()
TestWorkflowsApi.test_run_rename_when_resuming_jobs()
TestWorkflowsApi.test_run_rename_based_on_input_recursive()
TestWorkflowsApi.test_run_rename_based_on_input_repeat()
TestWorkflowsApi.test_run_rename_based_on_input_conditional()
TestWorkflowsApi.test_run_rename_based_on_input_conditional_legacy_pja_reference()
TestWorkflowsApi.test_run_rename_based_on_input_collection()
TestWorkflowsApi.test_run_hide_on_collection_output()
TestWorkflowsApi.test_run_hide_on_mapped_over_collection()
TestWorkflowsApi.test_tag_auto_propagation()
TestWorkflowsApi.test_run_add_tag_on_collection_output()
TestWorkflowsApi.test_run_add_tag_on_mapped_over_collection()
TestWorkflowsApi.test_run_remove_tag_on_collection_output()
TestWorkflowsApi.test_run_add_tag_on_database_operation_output()
TestWorkflowsApi.test_run_with_runtime_pja()
TestWorkflowsApi.test_run_with_delayed_runtime_pja()
TestWorkflowsApi.test_delete_intermediate_datasets_pja_1()
TestWorkflowsApi.test_validated_post_job_action_validated()
TestWorkflowsApi.test_validated_post_job_action_unvalidated_default()
TestWorkflowsApi.test_validated_post_job_action_invalid()
TestWorkflowsApi.test_value_restriction_with_select_and_text_param()
TestWorkflowsApi.test_value_restriction_with_select_from_subworkflow_input()
TestWorkflowsApi.test_run_replace_params_by_tool()
TestWorkflowsApi.test_run_replace_params_by_uuid()
TestWorkflowsApi.test_run_batch()
TestWorkflowsApi.test_run_batch_inputs()
TestWorkflowsApi.test_parameter_substitution_sanitization()
TestWorkflowsApi.test_parameter_substitution_validation_value_errors_0()
TestWorkflowsApi.test_run_map_over_with_step_parameter_dict()
TestWorkflowsApi.test_parameter_substitution_validation_value_errors_1()
TestWorkflowsApi.test_workflow_import_state_validation_1()
TestWorkflowsApi.test_subworkflow_import_order_maintained()
TestWorkflowsApi.test_run_replace_params_by_steps()
TestWorkflowsApi.test_run_replace_params_nested()
TestWorkflowsApi.test_run_replace_params_nested_normalized()
TestWorkflowsApi.test_run_replace_params_over_default()
TestWorkflowsApi.test_defaults_editor()
TestWorkflowsApi.test_empty_collection_sort()
TestWorkflowsApi.test_run_replace_params_over_default_delayed()
TestWorkflowsApi.test_pja_import_export()
TestWorkflowsApi.test_invocation_filtering()
TestWorkflowsApi.test_only_own_invocations_indexed_and_accessible()
TestWorkflowsApi.test_invocation_usage()
TestWorkflowsApi.test_invocation_with_collection_mapping()
TestWorkflowsApi.test_data_input_recovery_on_delayed_input()
TestWorkflowsApi.test_subworkflow_output_not_found_fails()
TestWorkflowsApi.test_invocations_accessible_imported_workflow()
TestWorkflowsApi.test_invocations_accessible_published_workflow()
TestWorkflowsApi.test_invocations_not_accessible_by_different_user_for_published_workflow()
TestWorkflowsApi.test_invocation_filtering_exclude_subworkflow()
TestWorkflowsApi.test_workflow_publishing()
TestWorkflowsApi.test_workflow_from_path_requires_admin()
TestWorkflowsApi.test_cannot_run_workflow_on_immutable_history()
TestWorkflowsApi.test_subworkflow_tags()
TestWorkflowsApi.test_upload_malformated_yaml()
TestAdminWorkflowsApi
TestAdminWorkflowsApi.require_admin_user
TestAdminWorkflowsApi.test_import_export_dynamic_tools()
TestAdminWorkflowsApi.dataset_populator
TestAdminWorkflowsApi.host
TestAdminWorkflowsApi.port
TestAdminWorkflowsApi.url
TestAdminWorkflowsApi.keepOutdir
TestAdminWorkflowsApi.test_data_resolver
TestAdminWorkflowsApi.workflow_populator
- galaxy_test.api.test_workflows_cwl module
BaseCwlWorkflowsApiTestCase
BaseCwlWorkflowsApiTestCase.allow_path_paste
BaseCwlWorkflowsApiTestCase.require_admin_user
BaseCwlWorkflowsApiTestCase.setUp()
BaseCwlWorkflowsApiTestCase.dataset_populator
BaseCwlWorkflowsApiTestCase.host
BaseCwlWorkflowsApiTestCase.port
BaseCwlWorkflowsApiTestCase.url
BaseCwlWorkflowsApiTestCase.keepOutdir
BaseCwlWorkflowsApiTestCase.test_data_resolver
BaseCwlWorkflowsApiTestCase.workflow_populator
- galaxy_test.api.test_workflows_from_yaml module
TestWorkflowsFromYamlApi
TestWorkflowsFromYamlApi.setUp()
TestWorkflowsFromYamlApi.test_simple_upload()
TestWorkflowsFromYamlApi.test_simple_output_actions()
TestWorkflowsFromYamlApi.test_inputs_to_steps()
TestWorkflowsFromYamlApi.test_outputs()
TestWorkflowsFromYamlApi.test_runtime_inputs()
TestWorkflowsFromYamlApi.test_subworkflow_simple()
TestWorkflowsFromYamlApi.test_subworkflow_duplicate()
TestWorkflowsFromYamlApi.test_pause()
TestWorkflowsFromYamlApi.test_implicit_connections()
TestWorkflowsFromYamlApi.test_conditional_ints()
TestWorkflowsFromYamlApi.test_workflow_embed_tool()
TestWorkflowsFromYamlApi.test_workflow_import_tool()
TestWorkflowsFromYamlApi.test_parameter_default_rep()
TestWorkflowsFromYamlApi.dataset_populator
TestWorkflowsFromYamlApi.host
TestWorkflowsFromYamlApi.port
TestWorkflowsFromYamlApi.url
TestWorkflowsFromYamlApi.keepOutdir
TestWorkflowsFromYamlApi.test_data_resolver
TestWorkflowsFromYamlApi.workflow_populator
- galaxy_test.base package
- Submodules
- galaxy_test.base.api module
- galaxy_test.base.api_asserts module
- galaxy_test.base.api_util module
- galaxy_test.base.constants module
- galaxy_test.base.env module
- galaxy_test.base.instrument module
- galaxy_test.base.interactor module
- galaxy_test.base.populators module
flakey()
skip_without_tool()
skip_without_asgi()
skip_without_datatype()
skip_without_visualization_plugin()
summarize_instance_history_on_error()
conformance_tests_gen()
CwlRun
CwlToolRun
CwlWorkflowRun
BasePopulator
BaseDatasetPopulator
BaseDatasetPopulator.new_dataset()
BaseDatasetPopulator.new_dataset_request()
BaseDatasetPopulator.new_bam_dataset()
BaseDatasetPopulator.fetch()
BaseDatasetPopulator.fetch_hdas()
BaseDatasetPopulator.fetch_hda()
BaseDatasetPopulator.create_deferred_hda()
BaseDatasetPopulator.export_dataset_to_remote_file()
BaseDatasetPopulator.tag_dataset()
BaseDatasetPopulator.create_from_store_raw()
BaseDatasetPopulator.create_from_store_raw_async()
BaseDatasetPopulator.create_from_store()
BaseDatasetPopulator.create_from_store_async()
BaseDatasetPopulator.create_contents_from_store_raw()
BaseDatasetPopulator.create_contents_from_store()
BaseDatasetPopulator.download_contents_to_store()
BaseDatasetPopulator.reupload_contents()
BaseDatasetPopulator.wait_for_tool_run()
BaseDatasetPopulator.check_run()
BaseDatasetPopulator.wait_for_history()
BaseDatasetPopulator.wait_for_history_jobs()
BaseDatasetPopulator.wait_for_jobs()
BaseDatasetPopulator.wait_for_job()
BaseDatasetPopulator.get_job_details()
BaseDatasetPopulator.compute_hash()
BaseDatasetPopulator.cancel_history_jobs()
BaseDatasetPopulator.history_jobs()
BaseDatasetPopulator.history_jobs_for_tool()
BaseDatasetPopulator.invocation_jobs()
BaseDatasetPopulator.active_history_jobs()
BaseDatasetPopulator.cancel_job()
BaseDatasetPopulator.delete_history()
BaseDatasetPopulator.delete_dataset()
BaseDatasetPopulator.wait_for_purge()
BaseDatasetPopulator.create_tool_from_path()
BaseDatasetPopulator.create_tool()
BaseDatasetPopulator.list_dynamic_tools()
BaseDatasetPopulator.show_dynamic_tool()
BaseDatasetPopulator.deactivate_dynamic_tool()
BaseDatasetPopulator.test_history_for()
BaseDatasetPopulator.test_history()
BaseDatasetPopulator.new_history()
BaseDatasetPopulator.copy_history()
BaseDatasetPopulator.fetch_payload()
BaseDatasetPopulator.upload_payload()
BaseDatasetPopulator.get_remote_files()
BaseDatasetPopulator.run_tool_payload()
BaseDatasetPopulator.build_tool_state()
BaseDatasetPopulator.run_tool_raw()
BaseDatasetPopulator.run_tool()
BaseDatasetPopulator.tools_post()
BaseDatasetPopulator.materialize_dataset_instance()
BaseDatasetPopulator.get_history_dataset_content()
BaseDatasetPopulator.display_chunk()
BaseDatasetPopulator.get_history_dataset_source_transform_actions()
BaseDatasetPopulator.get_history_dataset_details()
BaseDatasetPopulator.get_history_dataset_details_raw()
BaseDatasetPopulator.get_history_dataset_extra_files()
BaseDatasetPopulator.get_history_collection_details()
BaseDatasetPopulator.run_collection_creates_list()
BaseDatasetPopulator.new_error_dataset()
BaseDatasetPopulator.report_job_error_raw()
BaseDatasetPopulator.report_job_error()
BaseDatasetPopulator.run_detect_errors()
BaseDatasetPopulator.run_exit_code_from_file()
BaseDatasetPopulator.get_history_contents()
BaseDatasetPopulator.ds_entry()
BaseDatasetPopulator.dataset_storage_info()
BaseDatasetPopulator.dataset_storage_info_raw()
BaseDatasetPopulator.get_roles()
BaseDatasetPopulator.get_configuration()
BaseDatasetPopulator.user_email()
BaseDatasetPopulator.user_id()
BaseDatasetPopulator.user_private_role_id()
BaseDatasetPopulator.get_usage()
BaseDatasetPopulator.get_usage_for()
BaseDatasetPopulator.update_user()
BaseDatasetPopulator.set_user_preferred_object_store_id()
BaseDatasetPopulator.update_user_raw()
BaseDatasetPopulator.total_disk_usage()
BaseDatasetPopulator.update_object_store_id()
BaseDatasetPopulator.create_role()
BaseDatasetPopulator.create_quota()
BaseDatasetPopulator.get_quotas()
BaseDatasetPopulator.make_private()
BaseDatasetPopulator.make_dataset_public_raw()
BaseDatasetPopulator.update_permissions_raw()
BaseDatasetPopulator.make_public()
BaseDatasetPopulator.validate_dataset()
BaseDatasetPopulator.validate_dataset_and_wait()
BaseDatasetPopulator.setup_history_for_export_testing()
BaseDatasetPopulator.prepare_export()
BaseDatasetPopulator.export_url()
BaseDatasetPopulator.get_export_url()
BaseDatasetPopulator.import_history()
BaseDatasetPopulator.wait_for_history_with_name()
BaseDatasetPopulator.import_history_and_wait_for_name()
BaseDatasetPopulator.history_names()
BaseDatasetPopulator.rename_history()
BaseDatasetPopulator.update_history()
BaseDatasetPopulator.get_histories()
BaseDatasetPopulator.wait_on_history_length()
BaseDatasetPopulator.wait_on_download()
BaseDatasetPopulator.assert_download_request_ok()
BaseDatasetPopulator.wait_for_download_ready()
BaseDatasetPopulator.wait_on_task()
BaseDatasetPopulator.wait_on_task_id()
BaseDatasetPopulator.wait_on_download_request()
BaseDatasetPopulator.history_length()
BaseDatasetPopulator.reimport_history()
BaseDatasetPopulator.get_random_name()
BaseDatasetPopulator.wait_for_dataset()
BaseDatasetPopulator.create_object_store_raw()
BaseDatasetPopulator.create_object_store()
BaseDatasetPopulator.upgrade_object_store_raw()
BaseDatasetPopulator.upgrade_object_store()
BaseDatasetPopulator.update_object_store_raw()
BaseDatasetPopulator.update_object_store()
BaseDatasetPopulator.selectable_object_stores()
BaseDatasetPopulator.selectable_object_store_ids()
BaseDatasetPopulator.new_page()
BaseDatasetPopulator.new_page_raw()
BaseDatasetPopulator.new_page_payload()
BaseDatasetPopulator.export_history_to_uri_async()
BaseDatasetPopulator.import_history_from_uri_async()
BaseDatasetPopulator.download_history_to_store()
BaseDatasetPopulator.get_history_export_tasks()
BaseDatasetPopulator.make_page_public()
BaseDatasetPopulator.wait_for_export_task_on_record()
BaseDatasetPopulator.archive_history()
BaseDatasetPopulator.restore_archived_history()
BaseDatasetPopulator.get_archived_histories()
BaseDatasetPopulator.galaxy_interactor
GalaxyInteractorHttpMixin
DatasetPopulator
BaseWorkflowPopulator
BaseWorkflowPopulator.dataset_populator
BaseWorkflowPopulator.dataset_collection_populator
BaseWorkflowPopulator.load_workflow()
BaseWorkflowPopulator.load_random_x2_workflow()
BaseWorkflowPopulator.load_workflow_from_resource()
BaseWorkflowPopulator.simple_workflow()
BaseWorkflowPopulator.import_workflow_from_path_raw()
BaseWorkflowPopulator.import_workflow_from_path()
BaseWorkflowPopulator.create_workflow()
BaseWorkflowPopulator.create_workflow_response()
BaseWorkflowPopulator.upload_yaml_workflow()
BaseWorkflowPopulator.wait_for_invocation()
BaseWorkflowPopulator.workflow_invocations()
BaseWorkflowPopulator.cancel_invocation()
BaseWorkflowPopulator.history_invocations()
BaseWorkflowPopulator.wait_for_history_workflows()
BaseWorkflowPopulator.wait_for_workflow()
BaseWorkflowPopulator.get_invocation()
BaseWorkflowPopulator.download_invocation_to_store()
BaseWorkflowPopulator.download_invocation_to_uri()
BaseWorkflowPopulator.create_invocation_from_store_raw()
BaseWorkflowPopulator.create_invocation_from_store()
BaseWorkflowPopulator.validate_biocompute_object()
BaseWorkflowPopulator.get_ro_crate()
BaseWorkflowPopulator.validate_invocation_crate_directory()
BaseWorkflowPopulator.invoke_workflow_raw()
BaseWorkflowPopulator.invoke_workflow()
BaseWorkflowPopulator.invoke_workflow_and_assert_ok()
BaseWorkflowPopulator.invoke_workflow_and_wait()
BaseWorkflowPopulator.workflow_report_json()
BaseWorkflowPopulator.workflow_report_pdf()
BaseWorkflowPopulator.download_workflow()
BaseWorkflowPopulator.set_tags()
BaseWorkflowPopulator.update_workflow()
BaseWorkflowPopulator.refactor_workflow()
BaseWorkflowPopulator.export_for_update()
BaseWorkflowPopulator.run_workflow()
BaseWorkflowPopulator.dump_workflow()
BaseWorkflowPopulator.workflow_inputs()
BaseWorkflowPopulator.build_ds_map()
BaseWorkflowPopulator.setup_workflow_run()
BaseWorkflowPopulator.get_invocation_jobs()
BaseWorkflowPopulator.wait_for_invocation_and_jobs()
BaseWorkflowPopulator.index()
BaseWorkflowPopulator.index_ids()
BaseWorkflowPopulator.share_with_user()
RunJobsSummary
WorkflowPopulator
CwlPopulator
LibraryPopulator
LibraryPopulator.__init__()
LibraryPopulator.get_libraries()
LibraryPopulator.new_private_library()
LibraryPopulator.create_from_store_raw()
LibraryPopulator.create_from_store()
LibraryPopulator.new_library()
LibraryPopulator.fetch_single_url_to_folder()
LibraryPopulator.get_permissions()
LibraryPopulator.set_permissions()
LibraryPopulator.set_permissions_with_action()
LibraryPopulator.set_access_permission()
LibraryPopulator.set_add_permission()
LibraryPopulator.set_manage_permission()
LibraryPopulator.set_modify_permission()
LibraryPopulator.user_email()
LibraryPopulator.user_private_role_id()
LibraryPopulator.create_dataset_request()
LibraryPopulator.new_library_dataset()
LibraryPopulator.wait_on_library_dataset()
LibraryPopulator.raw_library_contents_create()
LibraryPopulator.show_ld_raw()
LibraryPopulator.show_ld()
LibraryPopulator.show_ldda()
LibraryPopulator.new_library_dataset_in_private_library()
LibraryPopulator.get_library_contents()
LibraryPopulator.get_library_contents_with_path()
LibraryPopulator.setup_fetch_to_folder()
BaseDatasetCollectionPopulator
BaseDatasetCollectionPopulator.dataset_populator
BaseDatasetCollectionPopulator.create_list_from_pairs()
BaseDatasetCollectionPopulator.nested_collection_identifiers()
BaseDatasetCollectionPopulator.create_nested_collection()
BaseDatasetCollectionPopulator.create_list_of_pairs_in_history()
BaseDatasetCollectionPopulator.create_list_of_list_in_history()
BaseDatasetCollectionPopulator.create_pair_in_history()
BaseDatasetCollectionPopulator.create_list_in_history()
BaseDatasetCollectionPopulator.upload_collection()
BaseDatasetCollectionPopulator.create_list_payload()
BaseDatasetCollectionPopulator.create_pair_payload()
BaseDatasetCollectionPopulator.wait_for_fetched_collection()
BaseDatasetCollectionPopulator.pair_identifiers()
BaseDatasetCollectionPopulator.list_identifiers()
BaseDatasetCollectionPopulator.wait_for_dataset_collection()
DatasetCollectionPopulator
load_data_dict()
stage_inputs()
stage_rules_example()
wait_on_state()
GiHttpMixin
GiDatasetPopulator
GiDatasetCollectionPopulator
GiWorkflowPopulator
wait_on()
wait_on_assertion()
- galaxy_test.base.rules_test_data module
- galaxy_test.base.testcase module
FunctionalTestCase
FunctionalTestCase.galaxy_driver_class
FunctionalTestCase.host
FunctionalTestCase.port
FunctionalTestCase.url
FunctionalTestCase.keepOutdir
FunctionalTestCase.test_data_resolver
FunctionalTestCase.setUp()
FunctionalTestCase.setUpClass()
FunctionalTestCase.tearDownClass()
FunctionalTestCase.get_filename()
FunctionalTestCase.pytestmark
- galaxy_test.base.uses_shed module
- galaxy_test.base.workflow_fixtures module
- galaxy_test.driver package
- Submodules
- galaxy_test.driver.driver_util module
- galaxy_test.driver.integration_setup module
- galaxy_test.driver.integration_util module
skip_if_jenkins()
skip_unless_amqp()
skip_unless_postgres()
skip_unless_docker()
skip_unless_kubernetes()
k8s_config_path()
skip_unless_fixed_port()
skip_for_older_python()
skip_if_github_workflow()
skip_unless_environ()
IntegrationInstance
IntegrationInstance.prefer_template_database
IntegrationInstance.isolate_galaxy_config
IntegrationInstance.dataset_populator
IntegrationInstance.setUpClass()
IntegrationInstance.tearDownClass()
IntegrationInstance.tearDown()
IntegrationInstance.setUp()
IntegrationInstance.restart()
IntegrationInstance.temp_config_dir()
IntegrationInstance.history_id()
IntegrationTestCase
integration_module_instance()
integration_tool_runner()
ConfiguresObjectStores
ConfiguresFileSourceTemplates
ConfiguresObjectStoreTemplates
ConfiguresDatabaseVault
ConfiguresWorkflowScheduling
- galaxy_test.driver.test_logging module
- galaxy_test.driver.testcase module
- galaxy_test.performance package
- galaxy_test.selenium package
- Subpackages
- Submodules
- galaxy_test.selenium.conftest module
- galaxy_test.selenium.framework module
- galaxy_test.selenium.jupyter_context module
- galaxy_test.selenium.test_admin_app module
TestAdminApp
TestAdminApp.run_as_admin
TestAdminApp.test_html_allowlist()
TestAdminApp.test_admin_toolshed()
TestAdminApp.test_admin_dependencies_display()
TestAdminApp.test_admin_jobs_display()
TestAdminApp.test_admin_server_display()
TestAdminApp.test_admin_user_display()
TestAdminApp.test_admin_data_manager()
TestAdminApp.host
TestAdminApp.port
TestAdminApp.url
TestAdminApp.keepOutdir
TestAdminApp.test_data_resolver
- galaxy_test.selenium.test_anon_history module
TestAnonymousHistories
TestAnonymousHistories.test_anon_history_landing()
TestAnonymousHistories.test_anon_history_upload()
TestAnonymousHistories.test_anon_history_after_registration()
TestAnonymousHistories.test_clean_anon_history_after_logout()
TestAnonymousHistories.host
TestAnonymousHistories.port
TestAnonymousHistories.url
TestAnonymousHistories.keepOutdir
TestAnonymousHistories.test_data_resolver
- galaxy_test.selenium.test_change_password module
TestChangePassword
TestChangePassword.test_change_password()
TestChangePassword.test_new_password_password()
TestChangePassword.test_no_password_confirmation()
TestChangePassword.test_currect_password_incorrect()
TestChangePassword.test_new_password_short()
TestChangePassword.test_new_password_same_password()
TestChangePassword.register_and_change_password()
TestChangePassword.fill_input_fields()
TestChangePassword.host
TestChangePassword.port
TestChangePassword.url
TestChangePassword.keepOutdir
TestChangePassword.test_data_resolver
- galaxy_test.selenium.test_collection_builders module
TestCollectionBuilders
TestCollectionBuilders.ensure_registered
TestCollectionBuilders.test_build_list_simple_hidden()
TestCollectionBuilders.test_build_list_and_show_items()
TestCollectionBuilders.test_build_pair_simple_hidden()
TestCollectionBuilders.test_build_paired_list_simple()
TestCollectionBuilders.test_build_paired_list_show_original()
TestCollectionBuilders.test_build_simple_list_via_rules_hidden()
TestCollectionBuilders.host
TestCollectionBuilders.port
TestCollectionBuilders.url
TestCollectionBuilders.keepOutdir
TestCollectionBuilders.test_data_resolver
- galaxy_test.selenium.test_collection_edit module
TestCollectionEdit
TestCollectionEdit.ensure_registered
TestCollectionEdit.test_change_dbkey_simple_list()
TestCollectionEdit.test_change_datatype_simple_list()
TestCollectionEdit.open_collection_edit_view()
TestCollectionEdit.navigate_to_database_tab()
TestCollectionEdit.navigate_to_datatype_tab()
TestCollectionEdit.check_current_data_value()
TestCollectionEdit.change_dbkey_value_and_click_submit()
TestCollectionEdit.change_datatype_value_and_click_submit()
TestCollectionEdit.host
TestCollectionEdit.port
TestCollectionEdit.url
TestCollectionEdit.keepOutdir
TestCollectionEdit.test_data_resolver
- galaxy_test.selenium.test_custom_builds module
TestCustomBuilds
TestCustomBuilds.user_email
TestCustomBuilds.build_name1
TestCustomBuilds.build_name2
TestCustomBuilds.build_key1
TestCustomBuilds.build_key2
TestCustomBuilds.test_build_add()
TestCustomBuilds.test_build_delete()
TestCustomBuilds.assert_custom_builds_in_grid()
TestCustomBuilds.add_custom_build()
TestCustomBuilds.delete_custom_build()
TestCustomBuilds.get_custom_builds()
TestCustomBuilds.navigate_to_custom_builds_page()
TestCustomBuilds.setup_shared_state()
- galaxy_test.selenium.test_data_source_tools module
- galaxy_test.selenium.test_dataset_metadata_download module
- galaxy_test.selenium.test_histories_list module
TestSavedHistories
TestSavedHistories.test_histories_list()
TestSavedHistories.test_history_switch()
TestSavedHistories.test_history_view()
TestSavedHistories.test_history_publish()
TestSavedHistories.test_rename_history()
TestSavedHistories.test_delete_and_undelete_history()
TestSavedHistories.test_permanently_delete_history()
TestSavedHistories.test_delete_and_undelete_multiple_histories()
TestSavedHistories.test_sort_by_name()
TestSavedHistories.test_standard_search()
TestSavedHistories.test_advanced_search()
TestSavedHistories.assert_histories_present()
TestSavedHistories.get_present_histories()
TestSavedHistories.test_tags()
TestSavedHistories.assert_grid_histories_are()
TestSavedHistories.assert_histories_in_grid()
TestSavedHistories.get_histories()
TestSavedHistories.add_tag()
TestSavedHistories.setup_shared_state()
TestSavedHistories.create_history()
TestSavedHistories.host
TestSavedHistories.port
TestSavedHistories.url
TestSavedHistories.keepOutdir
TestSavedHistories.test_data_resolver
- galaxy_test.selenium.test_history_copy_elements module
- galaxy_test.selenium.test_history_dataset_state module
TestHistoryDatasetState
TestHistoryDatasetState.ensure_registered
TestHistoryDatasetState.test_dataset_state()
TestHistoryDatasetState.test_dataset_change_dbkey()
TestHistoryDatasetState.test_dataset_state_discarded()
TestHistoryDatasetState.test_dataset_state_deferred()
TestHistoryDatasetState.host
TestHistoryDatasetState.port
TestHistoryDatasetState.url
TestHistoryDatasetState.keepOutdir
TestHistoryDatasetState.test_data_resolver
- galaxy_test.selenium.test_history_export module
- galaxy_test.selenium.test_history_multi_view module
TestHistoryMultiView
TestHistoryMultiView.ensure_registered
TestHistoryMultiView.test_display()
TestHistoryMultiView.test_list_list_display()
TestHistoryMultiView.prepare_multi_history_view()
TestHistoryMultiView.host
TestHistoryMultiView.port
TestHistoryMultiView.url
TestHistoryMultiView.keepOutdir
TestHistoryMultiView.test_data_resolver
- galaxy_test.selenium.test_history_options module
- galaxy_test.selenium.test_history_panel module
TestHistoryPanel
TestHistoryPanel.ensure_registered
TestHistoryPanel.test_history_panel_landing_state()
TestHistoryPanel.test_history_panel_rename()
TestHistoryPanel.test_history_rename_cancel_with_escape()
TestHistoryPanel.test_history_tags_and_annotations_buttons()
TestHistoryPanel.test_history_panel_annotations_change()
TestHistoryPanel.test_history_panel_tags_change()
TestHistoryPanel.open_tags()
TestHistoryPanel.clear_tags()
TestHistoryPanel.test_refresh_preserves_state()
TestHistoryPanel.assert_name_changed()
TestHistoryPanel.host
TestHistoryPanel.port
TestHistoryPanel.url
TestHistoryPanel.keepOutdir
TestHistoryPanel.test_data_resolver
- galaxy_test.selenium.test_history_panel_collections module
TestHistoryPanelCollections
TestHistoryPanelCollections.ensure_registered
TestHistoryPanelCollections.test_mapping_collection_states_terminal()
TestHistoryPanelCollections.test_mapping_collection_states_running()
TestHistoryPanelCollections.test_output_collection_states_terminal()
TestHistoryPanelCollections.test_output_collection_states_running()
TestHistoryPanelCollections.test_collection_job_details()
TestHistoryPanelCollections.test_back_to_history_button()
TestHistoryPanelCollections.test_rename_collection()
TestHistoryPanelCollections.test_name_tags_display()
TestHistoryPanelCollections.test_paired_display()
TestHistoryPanelCollections.test_list_display()
TestHistoryPanelCollections.test_list_paired_display()
TestHistoryPanelCollections.test_list_list_display()
TestHistoryPanelCollections.host
TestHistoryPanelCollections.port
TestHistoryPanelCollections.url
TestHistoryPanelCollections.keepOutdir
TestHistoryPanelCollections.test_data_resolver
- galaxy_test.selenium.test_history_panel_pagination module
- galaxy_test.selenium.test_history_sharing module
TestHistorySharing
TestHistorySharing.test_sharing_valid()
TestHistorySharing.test_sharing_valid_by_id()
TestHistorySharing.test_unsharing()
TestHistorySharing.test_unshared_history_inaccessible()
TestHistorySharing.test_sharing_with_invalid_user()
TestHistorySharing.test_sharing_with_self()
TestHistorySharing.test_shared_with_me()
TestHistorySharing.setup_two_users_with_one_shared_history()
TestHistorySharing.share_history_with_user()
TestHistorySharing.host
TestHistorySharing.port
TestHistorySharing.url
TestHistorySharing.keepOutdir
TestHistorySharing.test_data_resolver
TestHistoryRequiresLoginSelenium
TestHistoryRequiresLoginSelenium.ensure_registered
TestHistoryRequiresLoginSelenium.test_share_history_login_redirect()
TestHistoryRequiresLoginSelenium.host
TestHistoryRequiresLoginSelenium.port
TestHistoryRequiresLoginSelenium.url
TestHistoryRequiresLoginSelenium.keepOutdir
TestHistoryRequiresLoginSelenium.test_data_resolver
- galaxy_test.selenium.test_history_structure module
- galaxy_test.selenium.test_invocation_grid module
- galaxy_test.selenium.test_jupyter module
- galaxy_test.selenium.test_library_contents module
TestLibraryContents
TestLibraryContents.run_as_admin
TestLibraryContents.test_sub_folder()
TestLibraryContents.test_import_dataset_from_history()
TestLibraryContents.download_dataset_from_library()
TestLibraryContents.test_delete_dataset()
TestLibraryContents.test_import_dataset_from_path()
TestLibraryContents.test_import_dataset_from_import_dir()
TestLibraryContents.test_show_details()
TestLibraryContents.host
TestLibraryContents.port
TestLibraryContents.url
TestLibraryContents.keepOutdir
TestLibraryContents.test_data_resolver
- galaxy_test.selenium.test_library_landing module
TestLibraryLanding
TestLibraryLanding.run_as_admin
TestLibraryLanding.setup_with_driver()
TestLibraryLanding.test_create_new_close()
TestLibraryLanding.test_create_new()
TestLibraryLanding.test_rename()
TestLibraryLanding.test_sorting()
TestLibraryLanding.host
TestLibraryLanding.port
TestLibraryLanding.url
TestLibraryLanding.keepOutdir
TestLibraryLanding.test_data_resolver
- galaxy_test.selenium.test_library_to_collections module
TestLibraryToCollections
TestLibraryToCollections.requires_admin
TestLibraryToCollections.test_library_collection_export_new_history()
TestLibraryToCollections.test_library_collection_export()
TestLibraryToCollections.test_library_pair_export_new_history()
TestLibraryToCollections.test_library_pair_export()
TestLibraryToCollections.test_export_pairs_list_new_history()
TestLibraryToCollections.test_export_pairs_list()
TestLibraryToCollections.prepare_library_for_data_export()
TestLibraryToCollections.build_collection_and_assert()
TestLibraryToCollections.collection_export()
TestLibraryToCollections.list_of_pairs_export()
TestLibraryToCollections.host
TestLibraryToCollections.port
TestLibraryToCollections.url
TestLibraryToCollections.keepOutdir
TestLibraryToCollections.test_data_resolver
- galaxy_test.selenium.test_login module
- galaxy_test.selenium.test_navigates_galaxy module
- galaxy_test.selenium.test_pages module
- galaxy_test.selenium.test_personal_information module
TestManageInformation
TestManageInformation.test_api_key()
TestManageInformation.test_change_email()
TestManageInformation.test_public_name()
TestManageInformation.test_user_address()
TestManageInformation.navigate_to_manage_information()
TestManageInformation.clear_input_field_and_write()
TestManageInformation.get_address_input_field()
TestManageInformation.host
TestManageInformation.port
TestManageInformation.url
TestManageInformation.keepOutdir
TestManageInformation.test_data_resolver
TestDeleteCurrentAccount
- galaxy_test.selenium.test_published_histories_grid module
- galaxy_test.selenium.test_registration module
TestRegistration
TestRegistration.test_landing()
TestRegistration.test_registration()
TestRegistration.test_registration_accessibility()
TestRegistration.test_logout()
TestRegistration.test_reregister_email_fails()
TestRegistration.test_reregister_username_fails()
TestRegistration.test_bad_emails()
TestRegistration.test_short_password()
TestRegistration.test_password_confirmation()
TestRegistration.test_bad_usernames()
TestRegistration.host
TestRegistration.port
TestRegistration.url
TestRegistration.keepOutdir
TestRegistration.test_data_resolver
- galaxy_test.selenium.test_sign_out module
- galaxy_test.selenium.test_sizzle_loading module
- galaxy_test.selenium.test_stock_tours module
TestStockToursTestCase
TestStockToursTestCase.test_core_galaxy_ui()
TestStockToursTestCase.test_core_windows()
TestStockToursTestCase.test_core_history()
TestStockToursTestCase.test_core_deferred()
TestStockToursTestCase.host
TestStockToursTestCase.port
TestStockToursTestCase.url
TestStockToursTestCase.keepOutdir
TestStockToursTestCase.test_data_resolver
TourCallback
- galaxy_test.selenium.test_tool_describing_tours module
TestToolDescribingTours
TestToolDescribingTours.setUp()
TestToolDescribingTours.test_generate_tour_no_data()
TestToolDescribingTours.test_generate_tour_with_data()
TestToolDescribingTours.host
TestToolDescribingTours.port
TestToolDescribingTours.url
TestToolDescribingTours.keepOutdir
TestToolDescribingTours.test_data_resolver
- galaxy_test.selenium.test_tool_form module
TestToolForm
TestToolForm.test_run_tool_verify_contents_by_peek()
TestToolForm.test_run_tool_verify_dataset_details()
TestToolForm.test_verify_dataset_details_tables()
TestToolForm.test_drilldown_tool()
TestToolForm.click_menu_item()
TestToolForm.test_repeat_reordering()
TestToolForm.test_rerun()
TestToolForm.test_rerun_deleted_dataset()
TestToolForm.test_rerun_dataset_collection_element()
TestToolForm.test_run_data()
TestToolForm.test_bibtex_rendering()
TestToolForm.host
TestToolForm.port
TestToolForm.url
TestToolForm.keepOutdir
TestToolForm.test_data_resolver
TestLoggedInToolForm
TestLoggedInToolForm.ensure_registered
TestLoggedInToolForm.test_dataset_state_filtering()
TestLoggedInToolForm.test_run_apply_rules_1()
TestLoggedInToolForm.test_run_apply_rules_2()
TestLoggedInToolForm.test_run_apply_rules_3()
TestLoggedInToolForm.test_run_apply_rules_4()
TestLoggedInToolForm.test_run_apply_rules_tutorial()
TestLoggedInToolForm.host
TestLoggedInToolForm.port
TestLoggedInToolForm.url
TestLoggedInToolForm.keepOutdir
TestLoggedInToolForm.test_data_resolver
- galaxy_test.selenium.test_uploads module
TestUploads
TestUploads.test_upload_file()
TestUploads.test_upload_pasted_content()
TestUploads.test_upload_pasted_url_content()
TestUploads.test_upload_composite_dataset_pasted_data()
TestUploads.test_upload_simplest()
TestUploads.test_upload_specify_ext()
TestUploads.test_upload_specify_genome()
TestUploads.test_upload_specify_ext_all()
TestUploads.test_upload_specify_genome_all()
TestUploads.test_upload_deferred()
TestUploads.test_upload_list()
TestUploads.test_upload_pair()
TestUploads.test_upload_pair_specify_extension()
TestUploads.test_upload_paired_list()
TestUploads.test_upload_modal_retains_content()
TestUploads.test_rules_example_1_datasets()
TestUploads.test_rules_example_2_list()
TestUploads.test_rules_example_3_list_pairs()
TestUploads.test_rules_example_4_accessions()
TestUploads.test_rules_example_5_matching_collections()
TestUploads.test_rules_example_6_nested_lists()
TestUploads.test_rules_deferred_datasets()
TestUploads.test_rules_deferred_list()
TestUploads.host
TestUploads.port
TestUploads.url
TestUploads.keepOutdir
TestUploads.test_data_resolver
- galaxy_test.selenium.test_workflow_editor module
TestWorkflowEditor
TestWorkflowEditor.ensure_registered
TestWorkflowEditor.test_basics()
TestWorkflowEditor.test_edit_annotation()
TestWorkflowEditor.test_edit_name()
TestWorkflowEditor.test_edit_license()
TestWorkflowEditor.test_optional_select_data_field()
TestWorkflowEditor.test_data_input()
TestWorkflowEditor.test_collection_input()
TestWorkflowEditor.test_data_column_input_editing()
TestWorkflowEditor.test_integer_input()
TestWorkflowEditor.test_non_data_connections()
TestWorkflowEditor.test_non_data_map_over_carried_through()
TestWorkflowEditor.test_connecting_display_in_upload_false_connections()
TestWorkflowEditor.test_existing_connections()
TestWorkflowEditor.test_reconnecting_nodes()
TestWorkflowEditor.test_rendering_output_collection_connections()
TestWorkflowEditor.test_simple_mapping_connections()
TestWorkflowEditor.test_rendering_simple_nested_workflow()
TestWorkflowEditor.test_rendering_rules_workflow_1()
TestWorkflowEditor.test_rendering_rules_workflow_2()
TestWorkflowEditor.test_save_as()
TestWorkflowEditor.test_editor_tool_upgrade()
TestWorkflowEditor.test_editor_tool_upgrade_message()
TestWorkflowEditor.test_editor_subworkflow_tool_upgrade_message()
TestWorkflowEditor.set_text_element()
TestWorkflowEditor.test_change_datatype()
TestWorkflowEditor.test_change_datatype_post_job_action_lost_regression()
TestWorkflowEditor.test_change_datatype_in_subworkflow()
TestWorkflowEditor.test_edit_subworkflow()
TestWorkflowEditor.test_editor_duplicate_node()
TestWorkflowEditor.test_editor_embed_workflow()
TestWorkflowEditor.setup_subworkflow()
TestWorkflowEditor.test_editor_insert_steps()
TestWorkflowEditor.test_editor_create_conditional_step()
TestWorkflowEditor.test_conditional_subworkflow_step()
TestWorkflowEditor.switch_param_type()
TestWorkflowEditor.test_editor_invalid_tool_state()
TestWorkflowEditor.test_missing_tools()
TestWorkflowEditor.test_workflow_bookmarking()
TestWorkflowEditor.tab_to()
TestWorkflowEditor.test_aria_connections_menu()
TestWorkflowEditor.test_insert_input_handling()
TestWorkflowEditor.test_workflow_output_handling()
TestWorkflowEditor.test_map_over_output_indicator()
TestWorkflowEditor.test_editor_place_comments()
TestWorkflowEditor.test_editor_snapping()
TestWorkflowEditor.test_editor_selection()
TestWorkflowEditor.get_node_position()
TestWorkflowEditor.get_element_position()
TestWorkflowEditor.get_element_size()
TestWorkflowEditor.assert_node_output_is()
TestWorkflowEditor.workflow_editor_maximize_center_pane()
TestWorkflowEditor.workflow_editor_connect()
TestWorkflowEditor.assert_connected()
TestWorkflowEditor.assert_connection_invalid()
TestWorkflowEditor.assert_not_connected()
TestWorkflowEditor.open_in_workflow_editor()
TestWorkflowEditor.workflow_editor_source_sink_terminal_ids()
TestWorkflowEditor.workflow_editor_add_input()
TestWorkflowEditor.workflow_editor_destroy_connection()
TestWorkflowEditor.assert_input_mapped()
TestWorkflowEditor.assert_input_not_mapped()
TestWorkflowEditor.workflow_index_open_with_name()
TestWorkflowEditor.workflow_upload_yaml_with_random_name()
TestWorkflowEditor.assert_wf_name_is()
TestWorkflowEditor.assert_wf_annotation_is()
TestWorkflowEditor.assert_modal_has_text()
TestWorkflowEditor.move_center_of_canvas()
TestWorkflowEditor.host
TestWorkflowEditor.port
TestWorkflowEditor.url
TestWorkflowEditor.keepOutdir
TestWorkflowEditor.test_data_resolver
- galaxy_test.selenium.test_workflow_invocation_details module
- galaxy_test.selenium.test_workflow_management module
TestWorkflowManagement
TestWorkflowManagement.ensure_registered
TestWorkflowManagement.test_import_from_url()
TestWorkflowManagement.test_import_accessibility()
TestWorkflowManagement.test_view()
TestWorkflowManagement.test_rename()
TestWorkflowManagement.test_workflow_index_accessibility()
TestWorkflowManagement.test_download()
TestWorkflowManagement.test_tagging()
TestWorkflowManagement.test_tag_filtering()
TestWorkflowManagement.test_index_search()
TestWorkflowManagement.test_index_search_filters()
TestWorkflowManagement.test_index_advanced_search()
TestWorkflowManagement.test_workflow_delete()
TestWorkflowManagement.host
TestWorkflowManagement.port
TestWorkflowManagement.url
TestWorkflowManagement.keepOutdir
TestWorkflowManagement.test_data_resolver
- galaxy_test.selenium.test_workflow_run module
TestWorkflowRun
TestWorkflowRun.ensure_registered
TestWorkflowRun.test_simple_execution()
TestWorkflowRun.test_expanded_execution_of_simple_workflow()
TestWorkflowRun.test_runtime_parameters_simple()
TestWorkflowRun.test_subworkflows_expanded()
TestWorkflowRun.test_subworkflow_runtime_parameters()
TestWorkflowRun.test_replacement_parameters()
TestWorkflowRun.test_step_parameter_inputs()
TestWorkflowRun.test_replacement_parameters_on_subworkflows()
TestWorkflowRun.test_execution_with_tool_upgrade()
TestWorkflowRun.test_run_form_safe_upgrade_handling()
TestWorkflowRun.test_execution_with_multiple_inputs()
TestWorkflowRun.test_execution_with_text_default_value_connected_to_restricted_select()
TestWorkflowRun.test_execution_with_rules()
TestWorkflowRun.test_execution_with_custom_invocation_report()
TestWorkflowRun.test_execution_with_null_optional_select_from_data()
TestWorkflowRun.test_workflow_run_button_disabled_when_required_input_missing()
TestWorkflowRun.test_workflow_run_tag_filter()
TestWorkflowRun.host
TestWorkflowRun.port
TestWorkflowRun.url
TestWorkflowRun.keepOutdir
TestWorkflowRun.test_data_resolver
- galaxy_test.selenium.test_workflow_sharing module
TestWorkflowSharingRedirect
TestWorkflowSharingRedirect.ensure_registered
TestWorkflowSharingRedirect.test_share_workflow_with_login_redirect()
TestWorkflowSharingRedirect.test_export_workflow_with_login_redirect()
TestWorkflowSharingRedirect.host
TestWorkflowSharingRedirect.port
TestWorkflowSharingRedirect.url
TestWorkflowSharingRedirect.keepOutdir
TestWorkflowSharingRedirect.test_data_resolver
TestWorkflowSharing
TestWorkflowSharing.test_sharing_workflow_by_email()
TestWorkflowSharing.test_sharing_workflow_by_id()
TestWorkflowSharing.test_unsharing_workflow()
TestWorkflowSharing.test_sharing_with_invalid_user()
TestWorkflowSharing.test_sharing_with_self()
TestWorkflowSharing.setup_two_users_with_one_shared_workflow()
TestWorkflowSharing.host
TestWorkflowSharing.port
TestWorkflowSharing.url
TestWorkflowSharing.keepOutdir
TestWorkflowSharing.test_data_resolver