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galaxy_test package

Subpackages

• galaxy_test.api package
  • Subpackages
    • galaxy_test.api.cwl package
  • Submodules
  • galaxy_test.api.sharable module
    • SharingApiTests
      • SharingApiTests.api_name
      • SharingApiTests.create()
      • SharingApiTests.test_sharing_get_status()
      • SharingApiTests.test_sharing_access()
      • SharingApiTests.test_sharing_publish()
      • SharingApiTests.test_sharing_without_user()
      • SharingApiTests.test_sharing_with_user_id()
      • SharingApiTests.test_sharing_with_user_email()
      • SharingApiTests.test_update_sharing_with_users()
      • SharingApiTests.test_sharing_with_invalid_user()
      • SharingApiTests.test_set_slug()
  • galaxy_test.api.test_authenticate module
    • TestAuthenticateApi
      • TestAuthenticateApi.test_auth()
      • TestAuthenticateApi.test_tool_runner_session_cookie_handling()
      • TestAuthenticateApi.test_anon_history_creation()
  • galaxy_test.api.test_configuration module
    • TestConfigurationApi
      • TestConfigurationApi.test_whoami()
      • TestConfigurationApi.test_normal_user_configuration()
      • TestConfigurationApi.test_admin_user_configuration()
      • TestConfigurationApi.test_normal_user_decode_id()
      • TestConfigurationApi.test_version()
  • galaxy_test.api.test_dataset_collections module
    • TestDatasetCollectionsApi
      • TestDatasetCollectionsApi.dataset_populator
      • TestDatasetCollectionsApi.setUp()
      • TestDatasetCollectionsApi.test_create_pair_from_history()
      • TestDatasetCollectionsApi.test_create_list_from_history()
      • TestDatasetCollectionsApi.test_create_list_of_existing_pairs()
      • TestDatasetCollectionsApi.test_create_list_of_new_pairs()
      • TestDatasetCollectionsApi.test_list_download()
      • TestDatasetCollectionsApi.test_pair_download()
      • TestDatasetCollectionsApi.test_list_pair_download()
      • TestDatasetCollectionsApi.test_list_list_download()
      • TestDatasetCollectionsApi.test_list_list_list_download()
      • TestDatasetCollectionsApi.test_download_non_english_characters()
      • TestDatasetCollectionsApi.test_hda_security()
      • TestDatasetCollectionsApi.test_dataset_collection_element_security()
      • TestDatasetCollectionsApi.test_enforces_unique_names()
      • TestDatasetCollectionsApi.test_upload_collection()
      • TestDatasetCollectionsApi.test_upload_nested()
      • TestDatasetCollectionsApi.test_upload_collection_from_url()
      • TestDatasetCollectionsApi.test_upload_collection_deferred()
      • TestDatasetCollectionsApi.test_upload_collection_failed_expansion_url()
      • TestDatasetCollectionsApi.test_collection_contents_security()
      • TestDatasetCollectionsApi.test_published_collection_contents_accessible()
      • TestDatasetCollectionsApi.test_collection_contents_invalid_collection()
      • TestDatasetCollectionsApi.test_show_dataset_collection()
      • TestDatasetCollectionsApi.test_show_dataset_collection_contents()
      • TestDatasetCollectionsApi.test_collection_contents_limit_offset()
      • TestDatasetCollectionsApi.test_collection_contents_empty_root()
      • TestDatasetCollectionsApi.test_get_suitable_converters_single_datatype()
      • TestDatasetCollectionsApi.test_get_suitable_converters_different_datatypes_matches()
      • TestDatasetCollectionsApi.test_get_suitable_converters_different_datatypes_no_matches()
      • TestDatasetCollectionsApi.test_collection_tools_tag_propagation()
  • galaxy_test.api.test_datasets module
    • TestDatasetsApi
      • TestDatasetsApi.dataset_populator
      • TestDatasetsApi.setUp()
      • TestDatasetsApi.test_index()
      • TestDatasetsApi.test_index_using_keys()
      • TestDatasetsApi.test_index_order_by_size()
      • TestDatasetsApi.test_search_datasets()
      • TestDatasetsApi.test_search_by_tag()
      • TestDatasetsApi.test_search_by_tag_case_insensitive()
      • TestDatasetsApi.test_search_by_tool_id()
      • TestDatasetsApi.test_search_by_extension()
      • TestDatasetsApi.test_invalid_search()
      • TestDatasetsApi.test_search_returns_only_accessible()
      • TestDatasetsApi.test_show()
      • TestDatasetsApi.test_show_permission_denied()
      • TestDatasetsApi.test_admin_can_update_permissions()
      • TestDatasetsApi.test_display()
      • TestDatasetsApi.test_display_error_handling()
      • TestDatasetsApi.test_get_content_as_text()
      • TestDatasetsApi.test_get_content_as_text_with_compressed_text_data()
      • TestDatasetsApi.test_anon_get_content_as_text()
      • TestDatasetsApi.test_anon_private_get_content_as_text()
      • TestDatasetsApi.test_dataprovider_chunk()
      • TestDatasetsApi.test_bam_chunking_through_display_endpoint()
      • TestDatasetsApi.test_tabular_chunking_through_display_endpoint()
      • TestDatasetsApi.test_connectivity_table_chunking_through_display_endpoint()
      • TestDatasetsApi.test_head()
      • TestDatasetsApi.test_byte_range_support()
      • TestDatasetsApi.test_tag_change()
      • TestDatasetsApi.test_anon_tag_permissions()
      • TestDatasetsApi.test_update_datatype()
      • TestDatasetsApi.test_delete_cancels_job()
      • TestDatasetsApi.test_delete_cancels_job_with_query_params()
      • TestDatasetsApi.test_purge_does_not_reset_file_size()
      • TestDatasetsApi.test_delete_batch()
      • TestDatasetsApi.test_delete_batch_error()
      • TestDatasetsApi.test_composite_datatype_download()
      • TestDatasetsApi.test_compute_md5_on_primary_dataset()
      • TestDatasetsApi.test_compute_sha1_on_composite_dataset()
      • TestDatasetsApi.test_duplicated_hash_requests_on_primary()
      • TestDatasetsApi.test_duplicated_hash_requests_on_extra_files()
      • TestDatasetsApi.assert_hash_value()
      • TestDatasetsApi.test_storage_show()
      • TestDatasetsApi.test_storage_show_on_discarded()
      • TestDatasetsApi.test_storage_show_on_deferred()
      • TestDatasetsApi.test_display_application_link()
      • TestDatasetsApi.test_cannot_update_datatype_on_immutable_history()
  • galaxy_test.api.test_datatypes module
    • TestDatatypesApi
      • TestDatatypesApi.test_index()
      • TestDatatypesApi.test_index_upload_only()
      • TestDatatypesApi.test_full_index()
      • TestDatatypesApi.test_mapping()
      • TestDatatypesApi.test_types_and_mapping()
      • TestDatatypesApi.test_sniffers()
      • TestDatatypesApi.test_converters()
      • TestDatatypesApi.test_converter_present_after_toolbox_reload()
      • TestDatatypesApi.test_edam_formats()
      • TestDatatypesApi.test_edam_data()
  • galaxy_test.api.test_display_applications module
    • TestDisplayApplicationsApi
      • TestDisplayApplicationsApi.test_index()
      • TestDisplayApplicationsApi.test_reload_as_admin()
      • TestDisplayApplicationsApi.test_reload_with_some_ids()
      • TestDisplayApplicationsApi.test_reload_unknown_returns_as_failed()
      • TestDisplayApplicationsApi.test_reload_as_non_admin_returns_403()
  • galaxy_test.api.test_folder_contents module
    • TestFolderContentsApi
      • TestFolderContentsApi.dataset_populator
      • TestFolderContentsApi.setUp()
      • TestFolderContentsApi.test_create_hda_with_ldda_message()
      • TestFolderContentsApi.test_create_hdca_with_ldda_message()
      • TestFolderContentsApi.test_index()
      • TestFolderContentsApi.test_index_include_deleted()
      • TestFolderContentsApi.test_index_pagination()
      • TestFolderContentsApi.test_index_search_text()
      • TestFolderContentsApi.test_index_permissions()
      • TestFolderContentsApi.test_index_permissions_include_deleted()
      • TestFolderContentsApi.test_index_order_by()
  • galaxy_test.api.test_folders module
    • TestFoldersApi
      • TestFoldersApi.dataset_populator
      • TestFoldersApi.setUp()
      • TestFoldersApi.test_create()
      • TestFoldersApi.test_list_library()
      • TestFoldersApi.test_create_without_name_raises_400()
      • TestFoldersApi.test_permissions()
      • TestFoldersApi.test_update()
      • TestFoldersApi.test_delete()
      • TestFoldersApi.test_undelete()
      • TestFoldersApi.test_import_folder_to_history()
      • TestFoldersApi.test_update_deleted_raise_403()
  • galaxy_test.api.test_framework module
    • TestApiFramework
      • TestApiFramework.test_default_xframe_options()
      • TestApiFramework.test_user_cannont_run_as()
      • TestApiFramework.test_run_as_invalid_user()
      • TestApiFramework.test_run_as_valid_user()
  • galaxy_test.api.test_group_roles module
    • TestGroupRolesApi
      • TestGroupRolesApi.dataset_populator
      • TestGroupRolesApi.setUp()
      • TestGroupRolesApi.test_index()
      • TestGroupRolesApi.test_index_only_admin()
      • TestGroupRolesApi.test_index_unknown_group_raises_400()
      • TestGroupRolesApi.test_show()
      • TestGroupRolesApi.test_show_only_admin()
      • TestGroupRolesApi.test_show_unknown_raises_400()
      • TestGroupRolesApi.test_update()
      • TestGroupRolesApi.test_update_only_admin()
      • TestGroupRolesApi.test_delete()
      • TestGroupRolesApi.test_delete_only_admin()
      • TestGroupRolesApi.test_delete_unknown_raises_400()
  • galaxy_test.api.test_group_users module
    • TestGroupUsersApi
      • TestGroupUsersApi.dataset_populator
      • TestGroupUsersApi.setUp()
      • TestGroupUsersApi.test_index()
      • TestGroupUsersApi.test_index_only_admin()
      • TestGroupUsersApi.test_index_unknown_group_raises_400()
      • TestGroupUsersApi.test_show()
      • TestGroupUsersApi.test_show_only_admin()
      • TestGroupUsersApi.test_show_unknown_raises_400()
      • TestGroupUsersApi.test_update()
      • TestGroupUsersApi.test_update_only_admin()
      • TestGroupUsersApi.test_delete()
      • TestGroupUsersApi.test_delete_only_admin()
      • TestGroupUsersApi.test_delete_unknown_raises_400()
  • galaxy_test.api.test_groups module
    • TestGroupsApi
      • TestGroupsApi.dataset_populator
      • TestGroupsApi.setUp()
      • TestGroupsApi.test_create_valid()
      • TestGroupsApi.test_create_only_admin()
      • TestGroupsApi.test_create_invalid_params_raises_400()
      • TestGroupsApi.test_create_duplicated_name_raises_409()
      • TestGroupsApi.test_index()
      • TestGroupsApi.test_index_only_admin()
      • TestGroupsApi.test_show()
      • TestGroupsApi.test_show_only_admin()
      • TestGroupsApi.test_show_unknown_raises_400()
      • TestGroupsApi.test_update()
      • TestGroupsApi.test_update_only_admin()
      • TestGroupsApi.test_update_duplicating_name_raises_409()
      • TestGroupsApi.test_delete()
      • TestGroupsApi.test_delete_duplicating_name_raises_409()
      • TestGroupsApi.test_purge()
      • TestGroupsApi.test_purge_can_reuse_name()
  • galaxy_test.api.test_histories module
    • BaseHistories
    • TestHistoriesApi
      • TestHistoriesApi.setUp()
      • TestHistoriesApi.test_create_history()
      • TestHistoriesApi.test_create_history_json()
      • TestHistoriesApi.test_show_history()
      • TestHistoriesApi.test_show_history_returns_expected_urls()
      • TestHistoriesApi.test_show_respects_view()
      • TestHistoriesApi.test_show_most_recently_used()
      • TestHistoriesApi.test_index_order()
      • TestHistoriesApi.test_index_query()
      • TestHistoriesApi.test_index_views()
      • TestHistoriesApi.test_index_search_mode_views()
      • TestHistoriesApi.test_index_case_insensitive_contains_query()
      • TestHistoriesApi.test_index_advanced_filter()
      • TestHistoriesApi.test_delete()
      • TestHistoriesApi.test_purge()
      • TestHistoriesApi.test_undelete()
      • TestHistoriesApi.test_update()
      • TestHistoriesApi.test_update_invalid_attribute()
      • TestHistoriesApi.test_update_invalid_types()
      • TestHistoriesApi.test_invalid_keys()
      • TestHistoriesApi.test_create_anonymous_fails()
      • TestHistoriesApi.test_create_without_session_fails()
      • TestHistoriesApi.test_create_tag()
      • TestHistoriesApi.test_copy_history()
      • TestHistoriesApi.test_import_from_model_store_dict()
      • TestHistoriesApi.test_anonymous_can_import_published()
      • TestHistoriesApi.test_immutable_history_update_fails()
      • TestHistoriesApi.test_immutable_history_cannot_add_datasets()
      • TestHistoriesApi.test_cannot_modify_tags_on_immutable_history()
      • TestHistoriesApi.test_histories_count()
    • ImportExportTests
      • ImportExportTests.task_based
      • ImportExportTests.test_import_export()
      • ImportExportTests.test_import_1901_histories()
      • ImportExportTests.test_import_export_include_deleted()
      • ImportExportTests.test_import_export_failed_job()
      • ImportExportTests.test_import_metadata_regeneration()
      • ImportExportTests.test_import_export_collection()
      • ImportExportTests.test_import_export_nested_collection()
    • TestImportExportHistory
      • TestImportExportHistory.task_based
      • TestImportExportHistory.setUp()
    • TestSharingHistory
      • TestSharingHistory.api_name
      • TestSharingHistory.create()
      • TestSharingHistory.setUp()
      • TestSharingHistory.test_sharing_with_private_datasets()
      • TestSharingHistory.test_sharing_without_manage_permissions()
      • TestSharingHistory.test_sharing_empty_not_allowed()
      • TestSharingHistory.test_sharing_with_duplicated_users()
      • TestSharingHistory.test_sharing_private_history_makes_datasets_public()
    • TestArchivingHistoriesWithoutExportRecord
      • TestArchivingHistoriesWithoutExportRecord.setUp()
      • TestArchivingHistoriesWithoutExportRecord.test_archive()
      • TestArchivingHistoriesWithoutExportRecord.test_other_users_cannot_archive_history()
      • TestArchivingHistoriesWithoutExportRecord.test_restore()
      • TestArchivingHistoriesWithoutExportRecord.test_other_users_cannot_restore_history()
      • TestArchivingHistoriesWithoutExportRecord.test_archived_histories_index()
      • TestArchivingHistoriesWithoutExportRecord.test_archived_histories_filtering_and_sorting()
      • TestArchivingHistoriesWithoutExportRecord.test_archiving_an_archived_history_conflicts()
      • TestArchivingHistoriesWithoutExportRecord.test_archived_histories_are_not_listed_by_default()
  • galaxy_test.api.test_history_contents module
    • TestHistoryContentsApi
      • TestHistoryContentsApi.dataset_populator
      • TestHistoryContentsApi.setUp()
      • TestHistoryContentsApi.test_index_hda_summary()
      • TestHistoryContentsApi.test_make_private_and_public()
      • TestHistoryContentsApi.test_set_permissions_add_admin_history_contents()
      • TestHistoryContentsApi.test_set_permissions_add_admin_datasets()
      • TestHistoryContentsApi.test_index_hda_all_details()
      • TestHistoryContentsApi.test_index_hda_detail_by_id()
      • TestHistoryContentsApi.test_index_detail_parameter_error()
      • TestHistoryContentsApi.test_view_and_keys_parameters_for_datasets()
      • TestHistoryContentsApi.test_view_and_keys_parameters_for_collections()
      • TestHistoryContentsApi.test_show_hda()
      • TestHistoryContentsApi.test_hda_copy()
      • TestHistoryContentsApi.test_inheritance_chain()
      • TestHistoryContentsApi.test_library_copy()
      • TestHistoryContentsApi.test_update()
      • TestHistoryContentsApi.test_update_batch()
      • TestHistoryContentsApi.test_update_batch_collections()
      • TestHistoryContentsApi.test_update_type_failures()
      • TestHistoryContentsApi.test_delete()
      • TestHistoryContentsApi.test_delete_anon()
      • TestHistoryContentsApi.test_delete_permission_denied()
      • TestHistoryContentsApi.test_purge()
      • TestHistoryContentsApi.test_dataset_collection_creation_on_contents()
      • TestHistoryContentsApi.test_dataset_collection_creation_on_typed_contents()
      • TestHistoryContentsApi.test_dataset_collection_create_from_exisiting_datasets_with_new_tags()
      • TestHistoryContentsApi.test_jobs_summary_simple_hdca()
      • TestHistoryContentsApi.test_jobs_summary_implicit_hdca()
      • TestHistoryContentsApi.test_dataset_collection_hide_originals()
      • TestHistoryContentsApi.test_update_dataset_collection()
      • TestHistoryContentsApi.test_update_batch_dataset_collection()
      • TestHistoryContentsApi.test_hdca_copy()
      • TestHistoryContentsApi.test_hdca_copy_with_new_dbkey()
      • TestHistoryContentsApi.test_hdca_copy_and_elements()
      • TestHistoryContentsApi.test_hdca_from_library_datasets()
      • TestHistoryContentsApi.test_hdca_from_inaccessible_library_datasets()
      • TestHistoryContentsApi.test_job_state_summary_field()
      • TestHistoryContentsApi.test_index_filter_by_type()
      • TestHistoryContentsApi.test_index_filter_by_name_ignores_case()
      • TestHistoryContentsApi.test_index_filter_by_related_items()
      • TestHistoryContentsApi.test_elements_datatypes_field()
      • TestHistoryContentsApi.test_cannot_run_tools_on_immutable_histories()
      • TestHistoryContentsApi.test_cannot_update_dataset_collection_on_immutable_history()
      • TestHistoryContentsApi.test_cannot_update_dataset_on_immutable_history()
    • TestHistoryContentsApiBulkOperation
      • TestHistoryContentsApiBulkOperation.setUp()
      • TestHistoryContentsApiBulkOperation.test_explicit_items_selection()
      • TestHistoryContentsApiBulkOperation.test_dynamic_query_selection()
      • TestHistoryContentsApiBulkOperation.test_bulk_operations()
      • TestHistoryContentsApiBulkOperation.test_purging_collection_should_purge_contents()
      • TestHistoryContentsApiBulkOperation.test_deleting_collection_should_delete_contents()
      • TestHistoryContentsApiBulkOperation.test_only_owner_can_apply_bulk_operations()
      • TestHistoryContentsApiBulkOperation.test_bulk_tag_changes()
      • TestHistoryContentsApiBulkOperation.test_bulk_dbkey_change()
      • TestHistoryContentsApiBulkOperation.test_bulk_dbkey_change_dataset_collection()
      • TestHistoryContentsApiBulkOperation.test_bulk_datatype_change()
      • TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_collection()
      • TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_should_skip_set_metadata_on_deferred_data()
      • TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_errors()
      • TestHistoryContentsApiBulkOperation.test_bulk_datatype_change_auto()
      • TestHistoryContentsApiBulkOperation.test_index_returns_expected_total_matches()
      • TestHistoryContentsApiBulkOperation.test_index_with_stats_fails_with_non_orm_filters()
      • TestHistoryContentsApiBulkOperation.test_index_with_stats_has_extra_serialization()
  • galaxy_test.api.test_history_contents_provenance module
    • TestProvenance
      • TestProvenance.dataset_populator
      • TestProvenance.setUp()
      • TestProvenance.test_get_prov()
  • galaxy_test.api.test_jobs module
    • TestJobsApi
      • TestJobsApi.dataset_populator
      • TestJobsApi.setUp()
      • TestJobsApi.test_index()
      • TestJobsApi.test_system_details_admin_only()
      • TestJobsApi.test_admin_job_list()
      • TestJobsApi.test_job_list_collection_view()
      • TestJobsApi.test_job_list_default_view()
      • TestJobsApi.test_index_state_filter()
      • TestJobsApi.test_index_date_filter()
      • TestJobsApi.test_index_history()
      • TestJobsApi.test_index_workflow_and_invocation_filter()
      • TestJobsApi.test_index_workflow_filter_implicit_jobs()
      • TestJobsApi.test_index_limit_and_offset_filter()
      • TestJobsApi.test_index_search_filter_tool_id()
      • TestJobsApi.test_index_search_filter_email()
      • TestJobsApi.test_index_user_filter()
      • TestJobsApi.test_index_handler_runner_filters()
      • TestJobsApi.test_index_multiple_states_filter()
      • TestJobsApi.test_show()
      • TestJobsApi.test_show_security()
      • TestJobsApi.test_unhide_on_error()
      • TestJobsApi.test_no_unhide_on_error_if_mapped_over()
      • TestJobsApi.test_no_hide_on_rerun()
      • TestJobsApi.test_common_problems()
      • TestJobsApi.test_report_error()
      • TestJobsApi.test_report_error_anon()
      • TestJobsApi.test_report_error_bootstrap_admin()
      • TestJobsApi.test_deleting_output_keep_running_until_all_deleted()
      • TestJobsApi.test_purging_output_keep_running_until_all_purged()
      • TestJobsApi.test_purging_output_cleaned_after_ok_run()
      • TestJobsApi.test_resume_job()
      • TestJobsApi.test_search()
      • TestJobsApi.test_search_handle_identifiers()
      • TestJobsApi.test_search_delete_outputs()
      • TestJobsApi.test_implicit_collection_jobs()
      • TestJobsApi.test_search_with_hdca_list_input()
      • TestJobsApi.test_search_delete_hdca_output()
      • TestJobsApi.test_search_with_hdca_pair_input()
      • TestJobsApi.test_search_with_hdca_list_pair_input()
      • TestJobsApi.test_search_with_hdca_list_pair_collection_mapped_over_pair_input()
      • TestJobsApi.test_job_build_for_rerun()
      • TestJobsApi.test_dce_submission_security()
      • TestJobsApi.test_job_build_for_rerun_list_list()
      • TestJobsApi.test_get_inputs_and_outputs()
      • TestJobsApi.test_delete_job()
      • TestJobsApi.test_destination_params()
      • TestJobsApi.test_job_metrics()
      • TestJobsApi.test_parameters_display()
  • galaxy_test.api.test_libraries module
    • TestLibrariesApi
      • TestLibrariesApi.dataset_populator
      • TestLibrariesApi.setUp()
      • TestLibrariesApi.test_create()
      • TestLibrariesApi.test_create_from_store()
      • TestLibrariesApi.test_index()
      • TestLibrariesApi.test_delete()
      • TestLibrariesApi.test_nonadmin()
      • TestLibrariesApi.test_update()
      • TestLibrariesApi.test_update_non_admins_with_permission()
      • TestLibrariesApi.test_create_private_library_legacy_permissions()
      • TestLibrariesApi.test_create_private_library_permissions()
      • TestLibrariesApi.test_get_library_current_permissions()
      • TestLibrariesApi.test_get_library_available_permissions()
      • TestLibrariesApi.test_get_library_available_permissions_with_query()
      • TestLibrariesApi.test_create_library_dataset_bootstrap_user()
      • TestLibrariesApi.test_create_dataset_denied()
      • TestLibrariesApi.test_create_dataset_bootstrap_admin_user()
      • TestLibrariesApi.test_show_private_dataset_permissions()
      • TestLibrariesApi.test_create_dataset()
      • TestLibrariesApi.test_fetch_upload_to_folder()
      • TestLibrariesApi.test_fetch_zip_to_folder()
      • TestLibrariesApi.test_fetch_single_url_to_folder()
      • TestLibrariesApi.test_fetch_single_url_with_invalid_datatype()
      • TestLibrariesApi.test_legacy_upload_unknown_datatype()
      • TestLibrariesApi.test_fetch_failed_validation()
      • TestLibrariesApi.test_fetch_url_archive_to_folder()
      • TestLibrariesApi.test_fetch_bagit_archive_to_folder()
      • TestLibrariesApi.test_create_dataset_in_folder()
      • TestLibrariesApi.test_create_dataset_in_subfolder()
      • TestLibrariesApi.test_update_dataset_in_folder()
      • TestLibrariesApi.test_update_dataset_tags()
      • TestLibrariesApi.test_invalid_update_dataset_in_folder()
      • TestLibrariesApi.test_detect_datatype_of_dataset_in_folder()
      • TestLibrariesApi.test_ldda_collection_import_to_history()
      • TestLibrariesApi.test_ldda_collection_import_to_history_hide_source()
      • TestLibrariesApi.test_import_paired_collection()
      • TestLibrariesApi.test_create_datasets_in_library_from_collection()
      • TestLibrariesApi.test_create_datasets_in_folder_from_collection()
  • galaxy_test.api.test_licenses module
    • TestLicensesApi
      • TestLicensesApi.test_index()
      • TestLicensesApi.test_get_license()
      • TestLicensesApi.test_404_on_unknown_license()
  • galaxy_test.api.test_page_revisions module
    • TestPageRevisionsApi
      • TestPageRevisionsApi.test_create()
      • TestPageRevisionsApi.test_403_if_create_revision_on_unowned_page()
      • TestPageRevisionsApi.test_revision_index()
      • TestPageRevisionsApi.test_malformed_id_if_index_unknown_page()
      • TestPageRevisionsApi.dataset_populator
  • galaxy_test.api.test_pages module
    • BasePagesApiTestCase
      • BasePagesApiTestCase.dataset_populator
      • BasePagesApiTestCase.setUp()
    • TestPagesApi
      • TestPagesApi.api_name
      • TestPagesApi.create()
      • TestPagesApi.test_create()
      • TestPagesApi.test_create_from_report()
      • TestPagesApi.test_index()
      • TestPagesApi.test_400_on_index_deleted_shared()
      • TestPagesApi.test_index_deleted()
      • TestPagesApi.test_index_user_id_security()
      • TestPagesApi.test_index_user_published()
      • TestPagesApi.test_index_show_published()
      • TestPagesApi.test_index_show_shared_with_me()
      • TestPagesApi.test_index_show_shared_with_me_deleted()
      • TestPagesApi.test_index_owner()
      • TestPagesApi.test_index_ordering()
      • TestPagesApi.test_index_limit_offset()
      • TestPagesApi.test_index_search_slug()
      • TestPagesApi.test_index_search_title()
      • TestPagesApi.test_index_search_sharing_tags()
      • TestPagesApi.test_index_does_not_show_unavailable_pages()
      • TestPagesApi.test_cannot_create_pages_with_same_slug()
      • TestPagesApi.test_cannot_create_pages_with_invalid_slug()
      • TestPagesApi.test_cannot_create_page_with_invalid_content_format()
      • TestPagesApi.test_page_requires_name()
      • TestPagesApi.test_page_requires_slug()
      • TestPagesApi.test_delete()
      • TestPagesApi.test_400_on_delete_invalid_page_id()
      • TestPagesApi.test_403_on_delete_unowned_page()
      • TestPagesApi.test_400_on_invalid_id_encoding()
      • TestPagesApi.test_400_on_invalid_id_encoding_markdown()
      • TestPagesApi.test_400_on_invalid_embedded_content()
      • TestPagesApi.test_400_on_invalid_markdown_call()
      • TestPagesApi.test_show()
      • TestPagesApi.test_403_on_unowner_show()
      • TestPagesApi.test_501_on_download_pdf_when_service_unavailable()
      • TestPagesApi.test_pdf_when_service_available()
      • TestPagesApi.test_400_on_download_pdf_when_unsupported_content_format()
      • TestPagesApi.dataset_populator
      • TestPagesApi.host
      • TestPagesApi.port
      • TestPagesApi.url
      • TestPagesApi.keepOutdir
      • TestPagesApi.test_data_resolver
  • galaxy_test.api.test_roles module
    • TestRolesApi
      • TestRolesApi.dataset_populator
      • TestRolesApi.setUp()
      • TestRolesApi.test_list_and_show()
      • TestRolesApi.test_create_invalid_params()
      • TestRolesApi.test_create_valid()
      • TestRolesApi.test_show_error_codes()
      • TestRolesApi.test_create_only_admin()
      • TestRolesApi.test_delete()
      • TestRolesApi.test_delete_duplicating_name_raises_409()
      • TestRolesApi.test_purge()
      • TestRolesApi.test_purge_can_reuse_name()
      • TestRolesApi.check_role_dict()
  • galaxy_test.api.test_search module
  • galaxy_test.api.test_tool_data module
    • TestToolDataApi
      • TestToolDataApi.test_admin_only()
      • TestToolDataApi.test_list()
      • TestToolDataApi.test_show()
      • TestToolDataApi.test_show_field()
      • TestToolDataApi.test_download_field_file()
      • TestToolDataApi.test_reload()
      • TestToolDataApi.test_show_unknown_raises_404()
      • TestToolDataApi.test_show_unknown_field_raises_404()
      • TestToolDataApi.test_reload_unknown_raises_404()
      • TestToolDataApi.test_download_field_unknown_file_raises_404()
      • TestToolDataApi.test_delete_without_payload_raises_400()
      • TestToolDataApi.test_delete_without_values_raises_400()
      • TestToolDataApi.test_delete_with_wrong_values_raises_400()
  • galaxy_test.api.test_tools module
    • TestsTools
      • TestsTools.dataset_populator
      • TestsTools.dataset_collection_populator
    • TestToolsApi
      • TestToolsApi.dataset_populator
      • TestToolsApi.setUp()
      • TestToolsApi.test_index()
      • TestToolsApi.test_search_cat()
      • TestToolsApi.test_search_trimmer()
      • TestToolsApi.test_search_grep()
      • TestToolsApi.test_no_panel_index()
      • TestToolsApi.test_requirements()
      • TestToolsApi.test_show_repeat()
      • TestToolsApi.test_show_conditional()
      • TestToolsApi.test_show_multi_data()
      • TestToolsApi.test_show_output_collection()
      • TestToolsApi.test_data_source_build_request()
      • TestToolsApi.test_legacy_biotools_xref_injection()
      • TestToolsApi.test_data_source_ok_request()
      • TestToolsApi.test_data_source_sniff_fastqsanger()
      • TestToolsApi.test_data_sources_block_file_parameters()
      • TestToolsApi.test_model_attributes_sanitization()
      • TestToolsApi.test_test_data_filepath_security()
      • TestToolsApi.test_test_data_admin_security()
      • TestToolsApi.test_data_table_requirement_annotated()
      • TestToolsApi.test_test_data_composite_output()
      • TestToolsApi.test_test_data_collection_two_paired()
      • TestToolsApi.test_test_data_collection_nested()
      • TestToolsApi.test_test_data_null_boolean_inputs()
      • TestToolsApi.test_test_data_yaml_tools()
      • TestToolsApi.test_test_data_download()
      • TestToolsApi.test_test_data_downloads_security()
      • TestToolsApi.test_test_data_download_composite()
      • TestToolsApi.test_convert_dataset_explicit_history()
      • TestToolsApi.test_convert_dataset_implicit_history()
      • TestToolsApi.test_convert_hdca()
      • TestToolsApi.test_unzip_collection()
      • TestToolsApi.test_unzip_nested()
      • TestToolsApi.test_zip_inputs()
      • TestToolsApi.test_collection_operation_dataset_input_permissions()
      • TestToolsApi.test_collection_operation_collection_input_permissions()
      • TestToolsApi.test_zip_list_inputs()
      • TestToolsApi.test_database_operation_tool_with_pending_inputs()
      • TestToolsApi.test_extract_dataset_invalid_element_identifier()
      • TestToolsApi.test_filter_failed_list()
      • TestToolsApi.test_filter_failed_list_paired()
      • TestToolsApi.test_apply_rules_1()
      • TestToolsApi.test_apply_rules_2()
      • TestToolsApi.test_apply_rules_3()
      • TestToolsApi.test_apply_rules_4()
      • TestToolsApi.test_apply_rules_5()
      • TestToolsApi.test_apply_rules_6()
      • TestToolsApi.test_dataset_hidden_after_job_finish()
      • TestToolsApi.test_multi_select_as_list()
      • TestToolsApi.test_multi_select_optional()
      • TestToolsApi.test_library_data_param()
      • TestToolsApi.test_multidata_param()
      • TestToolsApi.test_run_cat1()
      • TestToolsApi.test_run_cat1_use_cached_job()
      • TestToolsApi.test_run_cat1_listified_param()
      • TestToolsApi.test_run_by_versions()
      • TestToolsApi.test_test_by_versions()
      • TestToolsApi.test_show_with_wrong_tool_version_in_tool_id()
      • TestToolsApi.test_run_cat1_single_meta_wrapper()
      • TestToolsApi.test_guess_derived_permissions()
      • TestToolsApi.test_guess_derived_permissions_collections()
      • TestToolsApi.test_validation()
      • TestToolsApi.test_validation_empty_dataset()
      • TestToolsApi.test_validation_in_repeat()
      • TestToolsApi.test_select_legal_values()
      • TestToolsApi.test_column_legal_values()
      • TestToolsApi.test_collection_parameter()
      • TestToolsApi.test_paired_collection_output()
      • TestToolsApi.test_list_collection_output()
      • TestToolsApi.test_list_collection_output_format_source()
      • TestToolsApi.test_dynamic_list_output()
      • TestToolsApi.test_dynamic_list_output_datasets_in_failed_state()
      • TestToolsApi.test_nonadmin_users_cannot_create_tools()
      • TestToolsApi.test_dynamic_tool_1()
      • TestToolsApi.test_dynamic_tool_from_path()
      • TestToolsApi.test_dynamic_tool_no_id()
      • TestToolsApi.test_show_dynamic_tools()
      • TestToolsApi.test_show_tool_source_admin()
      • TestToolsApi.test_show_tool_source_denied()
      • TestToolsApi.test_tool_deactivate()
      • TestToolsApi.test_run_cat1_with_two_inputs()
      • TestToolsApi.test_bam_state_regression()
      • TestToolsApi.test_qc_messages()
      • TestToolsApi.test_multirun_cat1()
      • TestToolsApi.test_multirun_non_data_parameter()
      • TestToolsApi.test_multirun_in_repeat()
      • TestToolsApi.test_multirun_in_repeat_mismatch()
      • TestToolsApi.test_multirun_on_multiple_inputs()
      • TestToolsApi.test_multirun_on_multiple_inputs_unlinked()
      • TestToolsApi.test_dynamic_parameter_error_handling()
      • TestToolsApi.test_map_over_collection()
      • TestToolsApi.test_map_over_empty_collection()
      • TestToolsApi.test_map_over_with_output_format_actions()
      • TestToolsApi.test_map_over_with_nested_paired_output_format_actions()
      • TestToolsApi.test_map_over_with_output_filter_no_filtering()
      • TestToolsApi.test_map_over_with_output_filter_on_optional_input()
      • TestToolsApi.test_map_over_with_output_filter_one_filtered()
      • TestToolsApi.test_map_over_with_complex_output_actions()
      • TestToolsApi.test_map_over_with_discovered_output_collection_elements()
      • TestToolsApi.test_identifier_in_map()
      • TestToolsApi.test_identifier_outside_map()
      • TestToolsApi.test_list_selectable_in_multidata_input()
      • TestToolsApi.test_identifier_in_multiple_reduce()
      • TestToolsApi.test_identifier_map_over_multiple_input_in_conditional()
      • TestToolsApi.test_identifier_map_over_multiple_input_in_conditional_new_payload_form()
      • TestToolsApi.test_identifier_multiple_reduce_in_repeat_new_payload_form()
      • TestToolsApi.test_identifier_map_over_input_in_conditional()
      • TestToolsApi.test_identifier_multiple_reduce_in_conditional()
      • TestToolsApi.test_identifier_multiple_reduce_in_repeat()
      • TestToolsApi.test_identifier_single_in_repeat()
      • TestToolsApi.test_identifier_multiple_in_conditional()
      • TestToolsApi.test_identifier_with_multiple_normal_datasets()
      • TestToolsApi.test_identifier_with_data_collection()
      • TestToolsApi.test_identifier_in_actions()
      • TestToolsApi.test_map_over_nested_collections()
      • TestToolsApi.test_paired_input_map_over_nested_collections()
      • TestToolsApi.test_paired_input_conditional_map_over_nested_collections()
      • TestToolsApi.test_map_over_two_collections()
      • TestToolsApi.test_map_over_two_collections_unlinked()
      • TestToolsApi.test_map_over_collected_and_individual_datasets()
      • TestToolsApi.test_default_identifier_source_map_over()
      • TestToolsApi.test_map_over_collection_output()
      • TestToolsApi.test_cannot_map_over_incompatible_collections()
      • TestToolsApi.test_map_over_collection_structured_like()
      • TestToolsApi.test_map_over_collection_type_source()
      • TestToolsApi.test_reduce_collections_legacy()
      • TestToolsApi.test_reduce_collections()
      • TestToolsApi.test_implicit_reduce_with_mapping()
      • TestToolsApi.test_implicit_conversion_and_reduce()
      • TestToolsApi.test_implicit_conversion_and_reduce_invalid_param()
      • TestToolsApi.test_reduce_collections_in_repeat()
      • TestToolsApi.test_reduce_collections_in_repeat_legacy()
      • TestToolsApi.test_reduce_multiple_lists_on_multi_data()
      • TestToolsApi.test_subcollection_mapping()
      • TestToolsApi.test_combined_mapping_and_subcollection_mapping()
      • TestToolsApi.test_group_tag_selection()
      • TestToolsApi.test_group_tag_selection_multiple()
      • TestToolsApi.test_galaxy_expression_tool_simplest()
      • TestToolsApi.test_galaxy_expression_tool_simple()
      • TestToolsApi.test_galaxy_expression_metadata()
      • TestToolsApi.test_run_deferred_dataset()
      • TestToolsApi.test_run_deferred_dataset_with_metadata_options_filter()
      • TestToolsApi.test_metadata_validator_on_deferred_input()
      • TestToolsApi.test_metadata_validator_can_fail_on_deferred_input()
      • TestToolsApi.test_run_deferred_mapping()
      • TestToolsApi.test_run_deferred_list_multi_data_reduction()
      • TestToolsApi.test_run_deferred_nested_list_input()
      • TestToolsApi.test_deferred_map_over_nested_collections()
    • dataset_to_param()
  • galaxy_test.api.test_tools_upload module
    • TestToolsUpload
      • TestToolsUpload.dataset_populator
      • TestToolsUpload.setUp()
      • TestToolsUpload.test_upload1_paste()
      • TestToolsUpload.test_upload1_paste_bad_datatype()
      • TestToolsUpload.test_upload_posix_newline_fixes_by_default()
      • TestToolsUpload.test_fetch_posix_unaltered()
      • TestToolsUpload.test_upload_disable_posix_fix()
      • TestToolsUpload.test_fetch_post_lines_option()
      • TestToolsUpload.test_post_lines_trailing()
      • TestToolsUpload.test_post_lines_trailing_off()
      • TestToolsUpload.test_fetch_post_lines_trailing_off_by_default()
      • TestToolsUpload.test_fetch_post_lines_trailing_if_to_posix()
      • TestToolsUpload.test_upload_tab_to_space_off_by_default()
      • TestToolsUpload.test_fetch_tab_to_space_off_by_default()
      • TestToolsUpload.test_upload_tab_to_space()
      • TestToolsUpload.test_fetch_tab_to_space()
      • TestToolsUpload.test_fetch_tab_to_space_doesnt_swap_newlines()
      • TestToolsUpload.test_fetch_compressed_with_explicit_type()
      • TestToolsUpload.test_fetch_compressed_default()
      • TestToolsUpload.test_fetch_compressed_auto_decompress_target()
      • TestToolsUpload.test_upload_decompress_off_with_auto_by_default()
      • TestToolsUpload.test_upload_decompresses_if_uncompressed_type_selected()
      • TestToolsUpload.test_upload_decompress_off_if_compressed_type_selected()
      • TestToolsUpload.test_upload_auto_decompress_off()
      • TestToolsUpload.test_fetch_compressed_with_auto()
      • TestToolsUpload.test_rdata_not_decompressed()
      • TestToolsUpload.test_csv_upload()
      • TestToolsUpload.test_csv_upload_auto()
      • TestToolsUpload.test_csv_fetch()
      • TestToolsUpload.test_csv_sniff_fetch()
      • TestToolsUpload.test_image_upload_auto()
      • TestToolsUpload.test_newlines_stage_fetch()
      • TestToolsUpload.test_stage_object()
      • TestToolsUpload.test_stage_object_fetch()
      • TestToolsUpload.test_newlines_stage_fetch_configured()
      • TestToolsUpload.test_stage_fetch_decompress_true()
      • TestToolsUpload.test_stage_fetch_decompress_false()
      • TestToolsUpload.test_upload_multiple_mixed_success()
      • TestToolsUpload.test_fetch_bam_file_from_url_with_extension_set()
      • TestToolsUpload.test_fetch_html_from_url()
      • TestToolsUpload.test_abort_fetch_job()
      • TestToolsUpload.test_composite_datatype()
      • TestToolsUpload.test_composite_datatype_fetch()
      • TestToolsUpload.test_composite_datatype_stage_fetch()
      • TestToolsUpload.test_composite_datatype_pbed_stage_fetch()
      • TestToolsUpload.test_composite_datatype_stage_upload1()
      • TestToolsUpload.test_composite_datatype_space_to_tab()
      • TestToolsUpload.test_composite_datatype_posix_lines()
      • TestToolsUpload.test_composite_datatype_isatab()
      • TestToolsUpload.test_upload_composite_as_tar()
      • TestToolsUpload.test_upload_composite_as_tar_fetch()
      • TestToolsUpload.test_upload_composite_from_bad_tar()
      • TestToolsUpload.test_upload_dbkey()
      • TestToolsUpload.test_fetch_bam_file()
      • TestToolsUpload.test_upload_bam_file()
      • TestToolsUpload.test_fetch_metadata()
      • TestToolsUpload.test_upload_multiple_files_1()
      • TestToolsUpload.test_upload_multiple_files_2()
      • TestToolsUpload.test_upload_multiple_files_3()
      • TestToolsUpload.test_upload_multiple_files_no_dbkey()
      • TestToolsUpload.test_upload_multiple_files_space_to_tab()
      • TestToolsUpload.test_multiple_files_posix_lines()
      • TestToolsUpload.test_upload_force_composite()
      • TestToolsUpload.test_upload_from_invalid_url()
      • TestToolsUpload.test_upload_from_404_url()
      • TestToolsUpload.test_upload_from_valid_url()
      • TestToolsUpload.test_upload_from_valid_url_spaces()
      • TestToolsUpload.test_upload_and_validate_invalid()
      • TestToolsUpload.test_upload_and_validate_valid()
      • TestToolsUpload.test_upload_dataset_resumable()
      • TestToolsUpload.test_upload_deferred()
  • galaxy_test.api.test_tours module
    • TestToursApi
      • TestToursApi.test_index()
      • TestToursApi.test_show()
      • TestToursApi.test_update()
  • galaxy_test.api.test_users module
    • TestUsersApi
      • TestUsersApi.test_index()
      • TestUsersApi.test_index_only_self_for_nonadmins()
      • TestUsersApi.test_show()
      • TestUsersApi.test_update()
      • TestUsersApi.test_admin_update()
      • TestUsersApi.test_delete_user()
      • TestUsersApi.test_purge_user()
      • TestUsersApi.test_undelete_user()
      • TestUsersApi.test_delete_user_cancel_all_jobs()
      • TestUsersApi.test_information()
      • TestUsersApi.test_manage_api_key()
      • TestUsersApi.test_only_admin_can_manage_other_users_api_key()
      • TestUsersApi.test_favorites()
      • TestUsersApi.test_search_favorites()
      • TestUsersApi.test_set_theme()
      • TestUsersApi.test_show_delete()
      • TestUsersApi.test_show_current()
      • TestUsersApi.test_manage_beacon_settings()
  • galaxy_test.api.test_visualizations module
    • TestVisualizationsApi
      • TestVisualizationsApi.api_name
      • TestVisualizationsApi.create()
      • TestVisualizationsApi.test_index_and_show()
      • TestVisualizationsApi.test_index_ordering()
      • TestVisualizationsApi.test_index_filtering()
      • TestVisualizationsApi.test_create()
      • TestVisualizationsApi.test_create_fails_without_title()
      • TestVisualizationsApi.test_create_fails_with_bad_slug()
      • TestVisualizationsApi.test_create_fails_with_invalid_config()
      • TestVisualizationsApi.test_sharing()
      • TestVisualizationsApi.test_update_title()
  • galaxy_test.api.test_webhooks module
    • TestWebhooksApi
      • TestWebhooksApi.setUp()
      • TestWebhooksApi.test_get_all()
      • TestWebhooksApi.test_get_data()
  • galaxy_test.api.test_workflow_extraction module
    • TestWorkflowExtractionApi
      • TestWorkflowExtractionApi.test_extract_from_history()
      • TestWorkflowExtractionApi.test_extract_with_copied_inputs()
      • TestWorkflowExtractionApi.test_extract_with_copied_inputs_reimported()
      • TestWorkflowExtractionApi.test_extract_mapping_workflow_from_history()
      • TestWorkflowExtractionApi.test_extract_copied_mapping_from_history()
      • TestWorkflowExtractionApi.test_extract_copied_mapping_from_history_reimported()
      • TestWorkflowExtractionApi.test_extract_reduction_from_history()
      • TestWorkflowExtractionApi.test_extract_workflows_with_dataset_collections()
      • TestWorkflowExtractionApi.test_subcollection_mapping()
      • TestWorkflowExtractionApi.test_subcollection_reduction()
      • TestWorkflowExtractionApi.test_extract_workflow_with_output_collections()
      • TestWorkflowExtractionApi.test_extract_with_mapped_output_collections()
      • TestWorkflowExtractionApi.dataset_populator
    • RunJobsSummary
      • RunJobsSummary.history_id
      • RunJobsSummary.inputs
      • RunJobsSummary.jobs
      • RunJobsSummary.workflow_id
  • galaxy_test.api.test_workflows module
    • RunsWorkflowFixtures
      • RunsWorkflowFixtures.workflow_populator
    • BaseWorkflowsApiTestCase
      • BaseWorkflowsApiTestCase.dataset_populator
      • BaseWorkflowsApiTestCase.setUp()
      • BaseWorkflowsApiTestCase.import_workflow()
    • ChangeDatatypeTests
      • ChangeDatatypeTests.dataset_populator
      • ChangeDatatypeTests.workflow_populator
      • ChangeDatatypeTests.test_assign_column_pja()
    • TestWorkflowSharingApi
      • TestWorkflowSharingApi.api_name
      • TestWorkflowSharingApi.create()
      • TestWorkflowSharingApi.setUp()
    • TestWorkflowsApi
      • TestWorkflowsApi.dataset_populator
      • TestWorkflowsApi.test_show_valid()
      • TestWorkflowsApi.test_show_subworkflow()
      • TestWorkflowsApi.test_show_invalid_key_is_400()
      • TestWorkflowsApi.test_cannot_show_private_workflow()
      • TestWorkflowsApi.test_cannot_download_private_workflow()
      • TestWorkflowsApi.test_anon_can_download_importable_workflow()
      • TestWorkflowsApi.test_anon_can_download_public_workflow()
      • TestWorkflowsApi.test_anon_can_see_workflow_preview()
      • TestWorkflowsApi.test_delete()
      • TestWorkflowsApi.test_other_cannot_delete()
      • TestWorkflowsApi.test_undelete()
      • TestWorkflowsApi.test_other_cannot_undelete()
      • TestWorkflowsApi.test_index()
      • TestWorkflowsApi.test_index_deleted()
      • TestWorkflowsApi.test_index_hidden()
      • TestWorkflowsApi.test_index_ordering()
      • TestWorkflowsApi.test_index_sort_by()
      • TestWorkflowsApi.test_index_limit_and_offset()
      • TestWorkflowsApi.test_index_show_shared()
      • TestWorkflowsApi.test_index_skip_step_counts()
      • TestWorkflowsApi.test_index_search()
      • TestWorkflowsApi.test_index_search_name()
      • TestWorkflowsApi.test_index_search_name_exact_vs_inexact()
      • TestWorkflowsApi.test_index_search_tags()
      • TestWorkflowsApi.test_index_search_tags_multiple()
      • TestWorkflowsApi.test_search_casing()
      • TestWorkflowsApi.test_index_search_tags_exact()
      • TestWorkflowsApi.test_index_published()
      • TestWorkflowsApi.test_index_search_is_tags()
      • TestWorkflowsApi.test_index_owner()
      • TestWorkflowsApi.test_index_parameter_invalid_combinations()
      • TestWorkflowsApi.test_index_total_matches()
      • TestWorkflowsApi.test_upload()
      • TestWorkflowsApi.test_upload_deprecated()
      • TestWorkflowsApi.test_import_tools_requires_admin()
      • TestWorkflowsApi.test_update()
      • TestWorkflowsApi.test_update_tags()
      • TestWorkflowsApi.test_update_name()
      • TestWorkflowsApi.test_update_name_empty()
      • TestWorkflowsApi.test_workflow_run_form_with_broken_dataset()
      • TestWorkflowsApi.test_refactor()
      • TestWorkflowsApi.test_refactor_tool_state_upgrade()
      • TestWorkflowsApi.test_update_no_tool_id()
      • TestWorkflowsApi.test_update_missing_tool()
      • TestWorkflowsApi.test_require_unique_step_uuids()
      • TestWorkflowsApi.test_require_unique_step_labels()
      • TestWorkflowsApi.test_import_deprecated()
      • TestWorkflowsApi.test_import_export_dynamic()
      • TestWorkflowsApi.test_import_annotations()
      • TestWorkflowsApi.test_import_subworkflows()
      • TestWorkflowsApi.test_subworkflow_inputs_optional_editor()
      • TestWorkflowsApi.test_not_importable_prevents_import()
      • TestWorkflowsApi.test_url_import()
      • TestWorkflowsApi.test_base64_import()
      • TestWorkflowsApi.test_trs_import()
      • TestWorkflowsApi.test_trs_import_from_dockstore_trs_url()
      • TestWorkflowsApi.test_trs_import_from_workflowhub_trs_url()
      • TestWorkflowsApi.test_anonymous_published()
      • TestWorkflowsApi.test_import_published()
      • TestWorkflowsApi.test_import_published_api()
      • TestWorkflowsApi.test_export()
      • TestWorkflowsApi.test_export_format2()
      • TestWorkflowsApi.test_export_editor()
      • TestWorkflowsApi.test_export_editor_filtered_outputs()
      • TestWorkflowsApi.test_export_editor_filtered_outputs_exception_handling()
      • TestWorkflowsApi.test_export_editor_collection_type_source()
      • TestWorkflowsApi.test_export_editor_subworkflow_collection_type_source()
      • TestWorkflowsApi.test_import_missing_tool()
      • TestWorkflowsApi.test_import_no_tool_id()
      • TestWorkflowsApi.test_import_export_with_runtime_inputs()
      • TestWorkflowsApi.test_run_workflow_by_index()
      • TestWorkflowsApi.test_run_workflow_by_uuid()
      • TestWorkflowsApi.test_run_workflow_by_uuid_implicitly()
      • TestWorkflowsApi.test_run_workflow_by_name()
      • TestWorkflowsApi.test_run_workflow()
      • TestWorkflowsApi.test_run_versioned_tools()
      • TestWorkflowsApi.test_workflow_run_output_collections()
      • TestWorkflowsApi.test_workflow_resume_from_failed_step()
      • TestWorkflowsApi.test_workflow_resume_from_failed_step_with_hdca_input()
      • TestWorkflowsApi.test_workflow_resume_with_mapped_over_input()
      • TestWorkflowsApi.test_workflow_resume_with_mapped_over_collection_input()
      • TestWorkflowsApi.test_workflow_list_list_multi_data_map_over()
      • TestWorkflowsApi.test_workflow_run_output_collection_mapping()
      • TestWorkflowsApi.test_workflow_run_dynamic_output_collections()
      • TestWorkflowsApi.test_workflow_run_dynamic_output_collections_2()
      • TestWorkflowsApi.test_workflow_run_dynamic_output_collections_3()
      • TestWorkflowsApi.test_workflow_input_tags()
      • TestWorkflowsApi.test_empty_file_data_column_specified()
      • TestWorkflowsApi.test_comma_separated_columns()
      • TestWorkflowsApi.test_comma_separated_columns_with_trailing_newline()
      • TestWorkflowsApi.test_runtime_data_column_parameter()
      • TestWorkflowsApi.test_workflow_metadata_validation_0()
      • TestWorkflowsApi.test_run_workflow_pick_value_bam_pja()
      • TestWorkflowsApi.test_run_workflow_simple_conditional_step()
      • TestWorkflowsApi.test_run_workflow_simple_conditional_step_with_nested_tool_state()
      • TestWorkflowsApi.test_run_workflow_invalid_when_expression()
      • TestWorkflowsApi.test_run_workflow_fails_when_expression_not_boolean()
      • TestWorkflowsApi.test_run_workflow_subworkflow_conditional_with_simple_mapping_step()
      • TestWorkflowsApi.test_run_workflow_subworkflow_conditional_step()
      • TestWorkflowsApi.test_run_nested_conditional_workflow_steps()
      • TestWorkflowsApi.test_run_workflow_conditional_step_map_over_expression_tool()
      • TestWorkflowsApi.test_run_workflow_conditional_subworkflow_step_map_over_expression_tool()
      • TestWorkflowsApi.test_run_workflow_conditional_subworkflow_step_map_over_expression_tool_with_extra_nesting()
      • TestWorkflowsApi.test_run_workflow_conditional_subworkflow_step_map_over_expression_tool_with_extra_nesting_skip_all()
      • TestWorkflowsApi.test_run_workflow_conditional_step_map_over_expression_tool_pick_value()
      • TestWorkflowsApi.test_run_subworkflow_simple()
      • TestWorkflowsApi.test_run_subworkflow_runtime_parameters()
      • TestWorkflowsApi.test_run_subworkflow_replacement_parameters()
      • TestWorkflowsApi.test_placements_from_text_inputs()
      • TestWorkflowsApi.test_placements_from_text_inputs_nested()
      • TestWorkflowsApi.test_run_runtime_parameters_after_pause()
      • TestWorkflowsApi.test_run_subworkflow_auto_labels()
      • TestWorkflowsApi.test_workflow_run_zip_collections()
      • TestWorkflowsApi.test_workflow_flatten()
      • TestWorkflowsApi.test_workflow_flatten_with_mapped_over_execution()
      • TestWorkflowsApi.test_workflow_invocation_report_1()
      • TestWorkflowsApi.test_workflow_invocation_report_custom()
      • TestWorkflowsApi.test_export_invocation_bco()
      • TestWorkflowsApi.test_export_invocation_ro_crate()
      • TestWorkflowsApi.test_merge_collection_scheduling()
      • TestWorkflowsApi.test_export_invocation_ro_crate_adv()
      • TestWorkflowsApi.test_workflow_run_apply_rules()
      • TestWorkflowsApi.test_filter_failed_mapping()
      • TestWorkflowsApi.test_keep_success_mapping_error()
      • TestWorkflowsApi.test_keep_success_mapping_paused()
      • TestWorkflowsApi.test_workflow_request()
      • TestWorkflowsApi.test_workflow_new_autocreated_history()
      • TestWorkflowsApi.test_workflow_output_dataset()
      • TestWorkflowsApi.test_workflow_output_dataset_collection()
      • TestWorkflowsApi.test_workflow_input_as_output()
      • TestWorkflowsApi.test_subworkflow_output_as_output()
      • TestWorkflowsApi.test_workflow_input_mapping()
      • TestWorkflowsApi.test_workflow_run_input_mapping_with_output_collections()
      • TestWorkflowsApi.test_workflow_run_input_mapping_with_subworkflows()
      • TestWorkflowsApi.test_subworkflow_recover_mapping_1()
      • TestWorkflowsApi.test_subworkflow_recover_mapping_2()
      • TestWorkflowsApi.test_recover_mapping_in_subworkflow()
      • TestWorkflowsApi.test_empty_list_mapping()
      • TestWorkflowsApi.test_subworkflow_map_over_data_column()
      • TestWorkflowsApi.test_run_with_implicit_collection_map_over()
      • TestWorkflowsApi.test_change_datatype_collection_map_over()
      • TestWorkflowsApi.test_change_datatype_discovered_outputs()
      • TestWorkflowsApi.test_mapping_and_subcollection_mapping()
      • TestWorkflowsApi.test_empty_list_reduction()
      • TestWorkflowsApi.test_cancel_new_workflow_when_history_deleted()
      • TestWorkflowsApi.test_cancel_ready_workflow_when_history_deleted()
      • TestWorkflowsApi.test_workflow_pause()
      • TestWorkflowsApi.test_workflow_pause_cancel()
      • TestWorkflowsApi.test_workflow_map_reduce_pause()
      • TestWorkflowsApi.test_cancel_workflow_invocation()
      • TestWorkflowsApi.test_cancel_workflow_invocation_deletes_jobs()
      • TestWorkflowsApi.test_workflow_failed_output_not_found()
      • TestWorkflowsApi.test_workflow_warning_workflow_output_not_found()
      • TestWorkflowsApi.test_workflow_failed_input_not_ok()
      • TestWorkflowsApi.test_workflow_failed_with_message_exception()
      • TestWorkflowsApi.test_invocation_map_over()
      • TestWorkflowsApi.test_invocation_map_over_inner_collection()
      • TestWorkflowsApi.test_invocation_map_over_inner_collection_with_tool_collection_input()
      • TestWorkflowsApi.test_pause_outputs_with_deleted_inputs()
      • TestWorkflowsApi.test_error_outputs_with_purged_inputs()
      • TestWorkflowsApi.test_run_with_implicit_connection()
      • TestWorkflowsApi.test_run_with_optional_data_specified_to_multi_data()
      • TestWorkflowsApi.test_run_with_optional_data_unspecified_to_multi_data()
      • TestWorkflowsApi.test_run_with_optional_data_unspecified_survives_delayed_step()
      • TestWorkflowsApi.test_run_subworkflow_with_optional_data_unspecified()
      • TestWorkflowsApi.test_run_with_non_optional_data_unspecified_fails_invocation()
      • TestWorkflowsApi.test_run_with_optional_collection_specified()
      • TestWorkflowsApi.test_run_with_optional_collection_unspecified()
      • TestWorkflowsApi.test_run_with_non_optional_collection_unspecified_fails_invocation()
      • TestWorkflowsApi.test_run_with_validated_parameter_connection_optional()
      • TestWorkflowsApi.test_run_with_int_parameter()
      • TestWorkflowsApi.test_run_with_int_parameter_nested()
      • TestWorkflowsApi.test_run_with_validated_parameter_connection_default_values()
      • TestWorkflowsApi.test_run_with_default_file_dataset_input()
      • TestWorkflowsApi.test_run_with_default_file_dataset_input_and_explicit_input()
      • TestWorkflowsApi.test_run_with_default_file_in_step_inline()
      • TestWorkflowsApi.test_run_with_validated_parameter_connection_invalid()
      • TestWorkflowsApi.test_run_with_text_input_connection()
      • TestWorkflowsApi.test_run_with_numeric_input_connection()
      • TestWorkflowsApi.test_expression_tool_map_over()
      • TestWorkflowsApi.test_workflow_optional_input_text_parameter_reevaluation()
      • TestWorkflowsApi.test_workflow_rerun_with_use_cached_job()
      • TestWorkflowsApi.test_workflow_rerun_with_cached_job_consumes_implicit_hdca()
      • TestWorkflowsApi.test_nested_workflow_rerun_with_use_cached_job()
      • TestWorkflowsApi.test_cannot_run_inaccessible_workflow()
      • TestWorkflowsApi.test_400_on_invalid_workflow_id()
      • TestWorkflowsApi.test_cannot_run_against_other_users_history()
      • TestWorkflowsApi.test_cannot_run_workflow_as_anon()
      • TestWorkflowsApi.test_cannot_run_bootstrap_admin_workflow()
      • TestWorkflowsApi.test_workflow_run_with_matching_lists()
      • TestWorkflowsApi.test_workflow_stability()
      • TestWorkflowsApi.test_empty_create()
      • TestWorkflowsApi.test_invalid_create_multiple_types()
      • TestWorkflowsApi.test_run_with_pja()
      • TestWorkflowsApi.test_hidden_param_in_workflow()
      • TestWorkflowsApi.test_optional_workflow_output()
      • TestWorkflowsApi.test_workflow_optional_input_filtering()
      • TestWorkflowsApi.test_run_rename_on_mapped_over_collection()
      • TestWorkflowsApi.test_run_rename_based_on_inputs_on_mapped_over_collection()
      • TestWorkflowsApi.test_run_rename_collection_output()
      • TestWorkflowsApi.test_run_build_list_hide_collection_output()
      • TestWorkflowsApi.test_run_build_list_delete_intermediate_collection_output()
      • TestWorkflowsApi.test_run_build_list_change_datatype_collection_output()
      • TestWorkflowsApi.test_run_build_list_change_datatype_new_metadata_file_parameter()
      • TestWorkflowsApi.test_run_build_list_rename_collection_output()
      • TestWorkflowsApi.test_run_rename_multiple_outputs()
      • TestWorkflowsApi.test_run_rename_based_on_input()
      • TestWorkflowsApi.test_run_rename_when_resuming_jobs()
      • TestWorkflowsApi.test_run_rename_based_on_input_recursive()
      • TestWorkflowsApi.test_run_rename_based_on_input_repeat()
      • TestWorkflowsApi.test_run_rename_based_on_input_conditional()
      • TestWorkflowsApi.test_run_rename_based_on_input_conditional_legacy_pja_reference()
      • TestWorkflowsApi.test_run_rename_based_on_input_collection()
      • TestWorkflowsApi.test_run_hide_on_collection_output()
      • TestWorkflowsApi.test_run_hide_on_mapped_over_collection()
      • TestWorkflowsApi.test_tag_auto_propagation()
      • TestWorkflowsApi.test_run_add_tag_on_collection_output()
      • TestWorkflowsApi.test_run_add_tag_on_mapped_over_collection()
      • TestWorkflowsApi.test_run_remove_tag_on_collection_output()
      • TestWorkflowsApi.test_run_add_tag_on_database_operation_output()
      • TestWorkflowsApi.test_run_with_runtime_pja()
      • TestWorkflowsApi.test_run_with_delayed_runtime_pja()
      • TestWorkflowsApi.test_delete_intermediate_datasets_pja_1()
      • TestWorkflowsApi.test_validated_post_job_action_validated()
      • TestWorkflowsApi.test_validated_post_job_action_unvalidated_default()
      • TestWorkflowsApi.test_validated_post_job_action_invalid()
      • TestWorkflowsApi.test_value_restriction_with_select_and_text_param()
      • TestWorkflowsApi.test_value_restriction_with_select_from_subworkflow_input()
      • TestWorkflowsApi.test_run_replace_params_by_tool()
      • TestWorkflowsApi.test_run_replace_params_by_uuid()
      • TestWorkflowsApi.test_run_batch()
      • TestWorkflowsApi.test_run_batch_inputs()
      • TestWorkflowsApi.test_parameter_substitution_sanitization()
      • TestWorkflowsApi.test_parameter_substitution_validation_value_errors_0()
      • TestWorkflowsApi.test_parameter_substitution_validation_value_errors_1()
      • TestWorkflowsApi.test_workflow_import_state_validation_1()
      • TestWorkflowsApi.test_subworkflow_import_order_maintained()
      • TestWorkflowsApi.test_run_replace_params_by_steps()
      • TestWorkflowsApi.test_run_replace_params_nested()
      • TestWorkflowsApi.test_run_replace_params_nested_normalized()
      • TestWorkflowsApi.test_run_replace_params_over_default()
      • TestWorkflowsApi.test_defaults_editor()
      • TestWorkflowsApi.test_empty_collection_sort()
      • TestWorkflowsApi.test_run_replace_params_over_default_delayed()
      • TestWorkflowsApi.test_pja_import_export()
      • TestWorkflowsApi.test_invocation_filtering()
      • TestWorkflowsApi.test_only_own_invocations_indexed_and_accessible()
      • TestWorkflowsApi.test_invocation_usage()
      • TestWorkflowsApi.test_invocation_with_collection_mapping()
      • TestWorkflowsApi.test_invocations_accessible_imported_workflow()
      • TestWorkflowsApi.test_invocations_accessible_published_workflow()
      • TestWorkflowsApi.test_invocations_not_accessible_by_different_user_for_published_workflow()
      • TestWorkflowsApi.test_invocation_filtering_exclude_subworkflow()
      • TestWorkflowsApi.test_workflow_publishing()
      • TestWorkflowsApi.test_workflow_from_path_requires_admin()
      • TestWorkflowsApi.test_cannot_run_workflow_on_immutable_history()
      • TestWorkflowsApi.test_subworkflow_tags()
    • TestAdminWorkflowsApi
      • TestAdminWorkflowsApi.require_admin_user
      • TestAdminWorkflowsApi.test_import_export_dynamic_tools()
      • TestAdminWorkflowsApi.dataset_populator
      • TestAdminWorkflowsApi.host
      • TestAdminWorkflowsApi.port
      • TestAdminWorkflowsApi.url
      • TestAdminWorkflowsApi.keepOutdir
      • TestAdminWorkflowsApi.test_data_resolver
      • TestAdminWorkflowsApi.workflow_populator
  • galaxy_test.api.test_workflows_cwl module
    • BaseCwlWorkflowsApiTestCase
      • BaseCwlWorkflowsApiTestCase.allow_path_paste
      • BaseCwlWorkflowsApiTestCase.require_admin_user
      • BaseCwlWorkflowsApiTestCase.setUp()
      • BaseCwlWorkflowsApiTestCase.dataset_populator
      • BaseCwlWorkflowsApiTestCase.host
      • BaseCwlWorkflowsApiTestCase.port
      • BaseCwlWorkflowsApiTestCase.url
      • BaseCwlWorkflowsApiTestCase.keepOutdir
      • BaseCwlWorkflowsApiTestCase.test_data_resolver
      • BaseCwlWorkflowsApiTestCase.workflow_populator
  • galaxy_test.api.test_workflows_from_yaml module
    • TestWorkflowsFromYamlApi
      • TestWorkflowsFromYamlApi.setUp()
      • TestWorkflowsFromYamlApi.test_simple_upload()
      • TestWorkflowsFromYamlApi.test_simple_output_actions()
      • TestWorkflowsFromYamlApi.test_inputs_to_steps()
      • TestWorkflowsFromYamlApi.test_outputs()
      • TestWorkflowsFromYamlApi.test_runtime_inputs()
      • TestWorkflowsFromYamlApi.test_subworkflow_simple()
      • TestWorkflowsFromYamlApi.test_subworkflow_duplicate()
      • TestWorkflowsFromYamlApi.test_pause()
      • TestWorkflowsFromYamlApi.test_implicit_connections()
      • TestWorkflowsFromYamlApi.test_conditional_ints()
      • TestWorkflowsFromYamlApi.test_workflow_embed_tool()
      • TestWorkflowsFromYamlApi.test_workflow_import_tool()
      • TestWorkflowsFromYamlApi.test_parameter_default_rep()
      • TestWorkflowsFromYamlApi.dataset_populator
      • TestWorkflowsFromYamlApi.host
      • TestWorkflowsFromYamlApi.port
      • TestWorkflowsFromYamlApi.url
      • TestWorkflowsFromYamlApi.keepOutdir
      • TestWorkflowsFromYamlApi.test_data_resolver
      • TestWorkflowsFromYamlApi.workflow_populator
• galaxy_test.base package
  • Submodules
  • galaxy_test.base.api module
    • celery_config()
    • UsesCeleryTasks
      • UsesCeleryTasks.handle_galaxy_config_kwds()
      • UsesCeleryTasks.celery_worker_parameters()
      • UsesCeleryTasks.celery_parameters()
    • HasAnonymousGalaxyInteractor
      • HasAnonymousGalaxyInteractor.anonymous_galaxy_interactor
      • HasAnonymousGalaxyInteractor.__init__()
    • UsesApiTestCaseMixin
      • UsesApiTestCaseMixin.url
      • UsesApiTestCaseMixin.tearDown()
      • UsesApiTestCaseMixin.anonymous_galaxy_interactor
      • UsesApiTestCaseMixin.galaxy_interactor
    • ApiTestInteractor
      • ApiTestInteractor.__init__()
      • ApiTestInteractor.cookies
      • ApiTestInteractor.get()
      • ApiTestInteractor.head()
      • ApiTestInteractor.post()
      • ApiTestInteractor.delete()
      • ApiTestInteractor.patch()
      • ApiTestInteractor.put()
      • ApiTestInteractor.api_key
      • ApiTestInteractor.keep_outputs_dir
    • AnonymousGalaxyInteractor
      • AnonymousGalaxyInteractor.__init__()
      • AnonymousGalaxyInteractor.api_key
      • AnonymousGalaxyInteractor.cookies
      • AnonymousGalaxyInteractor.keep_outputs_dir
  • galaxy_test.base.api_asserts module
    • assert_status_code_is()
    • assert_status_code_is_ok()
    • assert_has_keys()
    • assert_not_has_keys()
    • assert_error_code_is()
    • assert_object_id_error()
    • assert_error_message_contains()
    • assert_has_key()
  • galaxy_test.base.api_util module
    • get_admin_api_key()
    • get_user_api_key()
    • baseauth_headers()
    • random_name()
  • galaxy_test.base.constants module
  • galaxy_test.base.env module
    • setup_keep_outdir()
    • target_url_parts()
    • get_ip_address()
  • galaxy_test.base.instrument module
  • galaxy_test.base.interactor module
    • TestCaseGalaxyInteractor
      • TestCaseGalaxyInteractor.__init__()
      • TestCaseGalaxyInteractor.api_key
      • TestCaseGalaxyInteractor.cookies
      • TestCaseGalaxyInteractor.keep_outputs_dir
  • galaxy_test.base.populators module
    • flakey()
    • skip_without_tool()
    • skip_without_asgi()
    • skip_without_datatype()
    • skip_without_visualization_plugin()
    • summarize_instance_history_on_error()
    • conformance_tests_gen()
    • CwlRun
      • CwlRun.__init__()
      • CwlRun.get_output_as_object()
      • CwlRun.wait()
    • CwlToolRun
      • CwlToolRun.__init__()
      • CwlToolRun.job_id
      • CwlToolRun.wait()
    • CwlWorkflowRun
      • CwlWorkflowRun.__init__()
      • CwlWorkflowRun.wait()
    • BasePopulator
      • BasePopulator.galaxy_interactor
    • BaseDatasetPopulator
      • BaseDatasetPopulator.new_dataset()
      • BaseDatasetPopulator.new_dataset_request()
      • BaseDatasetPopulator.new_bam_dataset()
      • BaseDatasetPopulator.fetch()
      • BaseDatasetPopulator.fetch_hdas()
      • BaseDatasetPopulator.fetch_hda()
      • BaseDatasetPopulator.create_deferred_hda()
      • BaseDatasetPopulator.tag_dataset()
      • BaseDatasetPopulator.create_from_store_raw()
      • BaseDatasetPopulator.create_from_store_raw_async()
      • BaseDatasetPopulator.create_from_store()
      • BaseDatasetPopulator.create_from_store_async()
      • BaseDatasetPopulator.create_contents_from_store_raw()
      • BaseDatasetPopulator.create_contents_from_store()
      • BaseDatasetPopulator.download_contents_to_store()
      • BaseDatasetPopulator.reupload_contents()
      • BaseDatasetPopulator.wait_for_tool_run()
      • BaseDatasetPopulator.check_run()
      • BaseDatasetPopulator.wait_for_history()
      • BaseDatasetPopulator.wait_for_history_jobs()
      • BaseDatasetPopulator.wait_for_jobs()
      • BaseDatasetPopulator.wait_for_job()
      • BaseDatasetPopulator.get_job_details()
      • BaseDatasetPopulator.compute_hash()
      • BaseDatasetPopulator.cancel_history_jobs()
      • BaseDatasetPopulator.history_jobs()
      • BaseDatasetPopulator.history_jobs_for_tool()
      • BaseDatasetPopulator.invocation_jobs()
      • BaseDatasetPopulator.active_history_jobs()
      • BaseDatasetPopulator.cancel_job()
      • BaseDatasetPopulator.delete_history()
      • BaseDatasetPopulator.delete_dataset()
      • BaseDatasetPopulator.wait_for_purge()
      • BaseDatasetPopulator.create_tool_from_path()
      • BaseDatasetPopulator.create_tool()
      • BaseDatasetPopulator.list_dynamic_tools()
      • BaseDatasetPopulator.show_dynamic_tool()
      • BaseDatasetPopulator.deactivate_dynamic_tool()
      • BaseDatasetPopulator.test_history_for()
      • BaseDatasetPopulator.test_history()
      • BaseDatasetPopulator.new_history()
      • BaseDatasetPopulator.copy_history()
      • BaseDatasetPopulator.fetch_payload()
      • BaseDatasetPopulator.upload_payload()
      • BaseDatasetPopulator.get_remote_files()
      • BaseDatasetPopulator.run_tool_payload()
      • BaseDatasetPopulator.build_tool_state()
      • BaseDatasetPopulator.run_tool_raw()
      • BaseDatasetPopulator.run_tool()
      • BaseDatasetPopulator.tools_post()
      • BaseDatasetPopulator.materialize_dataset_instance()
      • BaseDatasetPopulator.get_history_dataset_content()
      • BaseDatasetPopulator.display_chunk()
      • BaseDatasetPopulator.get_history_dataset_source_transform_actions()
      • BaseDatasetPopulator.get_history_dataset_details()
      • BaseDatasetPopulator.get_history_dataset_details_raw()
      • BaseDatasetPopulator.get_history_dataset_extra_files()
      • BaseDatasetPopulator.get_history_collection_details()
      • BaseDatasetPopulator.run_collection_creates_list()
      • BaseDatasetPopulator.new_error_dataset()
      • BaseDatasetPopulator.run_exit_code_from_file()
      • BaseDatasetPopulator.get_history_contents()
      • BaseDatasetPopulator.ds_entry()
      • BaseDatasetPopulator.dataset_storage_info()
      • BaseDatasetPopulator.dataset_storage_info_raw()
      • BaseDatasetPopulator.get_roles()
      • BaseDatasetPopulator.get_configuration()
      • BaseDatasetPopulator.user_email()
      • BaseDatasetPopulator.user_id()
      • BaseDatasetPopulator.user_private_role_id()
      • BaseDatasetPopulator.get_usage()
      • BaseDatasetPopulator.get_usage_for()
      • BaseDatasetPopulator.update_user()
      • BaseDatasetPopulator.update_user_raw()
      • BaseDatasetPopulator.total_disk_usage()
      • BaseDatasetPopulator.update_object_store_id()
      • BaseDatasetPopulator.create_role()
      • BaseDatasetPopulator.create_quota()
      • BaseDatasetPopulator.get_quotas()
      • BaseDatasetPopulator.make_private()
      • BaseDatasetPopulator.make_dataset_public_raw()
      • BaseDatasetPopulator.update_permissions_raw()
      • BaseDatasetPopulator.make_public()
      • BaseDatasetPopulator.validate_dataset()
      • BaseDatasetPopulator.validate_dataset_and_wait()
      • BaseDatasetPopulator.setup_history_for_export_testing()
      • BaseDatasetPopulator.prepare_export()
      • BaseDatasetPopulator.export_url()
      • BaseDatasetPopulator.get_export_url()
      • BaseDatasetPopulator.import_history()
      • BaseDatasetPopulator.wait_for_history_with_name()
      • BaseDatasetPopulator.import_history_and_wait_for_name()
      • BaseDatasetPopulator.history_names()
      • BaseDatasetPopulator.rename_history()
      • BaseDatasetPopulator.update_history()
      • BaseDatasetPopulator.get_histories()
      • BaseDatasetPopulator.wait_on_history_length()
      • BaseDatasetPopulator.wait_on_download()
      • BaseDatasetPopulator.assert_download_request_ok()
      • BaseDatasetPopulator.wait_for_download_ready()
      • BaseDatasetPopulator.wait_on_task()
      • BaseDatasetPopulator.wait_on_task_id()
      • BaseDatasetPopulator.wait_on_download_request()
      • BaseDatasetPopulator.history_length()
      • BaseDatasetPopulator.reimport_history()
      • BaseDatasetPopulator.get_random_name()
      • BaseDatasetPopulator.wait_for_dataset()
      • BaseDatasetPopulator.selectable_object_stores()
      • BaseDatasetPopulator.selectable_object_store_ids()
      • BaseDatasetPopulator.new_page()
      • BaseDatasetPopulator.new_page_raw()
      • BaseDatasetPopulator.new_page_payload()
      • BaseDatasetPopulator.export_history_to_uri_async()
      • BaseDatasetPopulator.import_history_from_uri_async()
      • BaseDatasetPopulator.download_history_to_store()
      • BaseDatasetPopulator.get_history_export_tasks()
      • BaseDatasetPopulator.make_page_public()
      • BaseDatasetPopulator.wait_for_export_task_on_record()
      • BaseDatasetPopulator.archive_history()
      • BaseDatasetPopulator.restore_archived_history()
      • BaseDatasetPopulator.get_archived_histories()
      • BaseDatasetPopulator.galaxy_interactor
    • GalaxyInteractorHttpMixin
      • GalaxyInteractorHttpMixin.galaxy_interactor
    • DatasetPopulator
      • DatasetPopulator.__init__()
      • DatasetPopulator.galaxy_interactor
    • BaseWorkflowPopulator
      • BaseWorkflowPopulator.dataset_populator
      • BaseWorkflowPopulator.dataset_collection_populator
      • BaseWorkflowPopulator.load_workflow()
      • BaseWorkflowPopulator.load_random_x2_workflow()
      • BaseWorkflowPopulator.load_workflow_from_resource()
      • BaseWorkflowPopulator.simple_workflow()
      • BaseWorkflowPopulator.import_workflow_from_path_raw()
      • BaseWorkflowPopulator.import_workflow_from_path()
      • BaseWorkflowPopulator.create_workflow()
      • BaseWorkflowPopulator.create_workflow_response()
      • BaseWorkflowPopulator.upload_yaml_workflow()
      • BaseWorkflowPopulator.wait_for_invocation()
      • BaseWorkflowPopulator.workflow_invocations()
      • BaseWorkflowPopulator.cancel_invocation()
      • BaseWorkflowPopulator.history_invocations()
      • BaseWorkflowPopulator.wait_for_history_workflows()
      • BaseWorkflowPopulator.wait_for_workflow()
      • BaseWorkflowPopulator.get_invocation()
      • BaseWorkflowPopulator.download_invocation_to_store()
      • BaseWorkflowPopulator.download_invocation_to_uri()
      • BaseWorkflowPopulator.create_invocation_from_store_raw()
      • BaseWorkflowPopulator.create_invocation_from_store()
      • BaseWorkflowPopulator.get_biocompute_object()
      • BaseWorkflowPopulator.validate_biocompute_object()
      • BaseWorkflowPopulator.get_ro_crate()
      • BaseWorkflowPopulator.validate_invocation_crate_directory()
      • BaseWorkflowPopulator.invoke_workflow_raw()
      • BaseWorkflowPopulator.invoke_workflow()
      • BaseWorkflowPopulator.invoke_workflow_and_assert_ok()
      • BaseWorkflowPopulator.invoke_workflow_and_wait()
      • BaseWorkflowPopulator.workflow_report_json()
      • BaseWorkflowPopulator.workflow_report_pdf()
      • BaseWorkflowPopulator.download_workflow()
      • BaseWorkflowPopulator.set_tags()
      • BaseWorkflowPopulator.update_workflow()
      • BaseWorkflowPopulator.refactor_workflow()
      • BaseWorkflowPopulator.export_for_update()
      • BaseWorkflowPopulator.run_workflow()
      • BaseWorkflowPopulator.dump_workflow()
      • BaseWorkflowPopulator.workflow_inputs()
      • BaseWorkflowPopulator.build_ds_map()
      • BaseWorkflowPopulator.setup_workflow_run()
      • BaseWorkflowPopulator.get_invocation_jobs()
      • BaseWorkflowPopulator.wait_for_invocation_and_jobs()
      • BaseWorkflowPopulator.index()
      • BaseWorkflowPopulator.index_ids()
      • BaseWorkflowPopulator.share_with_user()
    • RunJobsSummary
      • RunJobsSummary.history_id
      • RunJobsSummary.workflow_id
      • RunJobsSummary.invocation_id
      • RunJobsSummary.inputs
      • RunJobsSummary.jobs
      • RunJobsSummary.invocation
      • RunJobsSummary.workflow_request
      • RunJobsSummary.jobs_for_tool()
    • WorkflowPopulator
      • WorkflowPopulator.__init__()
      • WorkflowPopulator.galaxy_interactor
      • WorkflowPopulator.import_workflow()
      • WorkflowPopulator.import_tool()
      • WorkflowPopulator.scaling_workflow_yaml()
    • CwlPopulator
      • CwlPopulator.__init__()
      • CwlPopulator.get_conformance_test()
      • CwlPopulator.run_cwl_job()
      • CwlPopulator.run_conformance_test()
    • LibraryPopulator
      • LibraryPopulator.__init__()
      • LibraryPopulator.get_libraries()
      • LibraryPopulator.new_private_library()
      • LibraryPopulator.create_from_store_raw()
      • LibraryPopulator.create_from_store()
      • LibraryPopulator.new_library()
      • LibraryPopulator.fetch_single_url_to_folder()
      • LibraryPopulator.get_permissions()
      • LibraryPopulator.set_permissions()
      • LibraryPopulator.set_permissions_with_action()
      • LibraryPopulator.set_access_permission()
      • LibraryPopulator.set_add_permission()
      • LibraryPopulator.set_manage_permission()
      • LibraryPopulator.set_modify_permission()
      • LibraryPopulator.user_email()
      • LibraryPopulator.user_private_role_id()
      • LibraryPopulator.create_dataset_request()
      • LibraryPopulator.new_library_dataset()
      • LibraryPopulator.wait_on_library_dataset()
      • LibraryPopulator.raw_library_contents_create()
      • LibraryPopulator.show_ld_raw()
      • LibraryPopulator.show_ld()
      • LibraryPopulator.show_ldda()
      • LibraryPopulator.new_library_dataset_in_private_library()
      • LibraryPopulator.get_library_contents()
      • LibraryPopulator.get_library_contents_with_path()
      • LibraryPopulator.setup_fetch_to_folder()
    • BaseDatasetCollectionPopulator
      • BaseDatasetCollectionPopulator.dataset_populator
      • BaseDatasetCollectionPopulator.create_list_from_pairs()
      • BaseDatasetCollectionPopulator.nested_collection_identifiers()
      • BaseDatasetCollectionPopulator.create_nested_collection()
      • BaseDatasetCollectionPopulator.create_list_of_pairs_in_history()
      • BaseDatasetCollectionPopulator.create_list_of_list_in_history()
      • BaseDatasetCollectionPopulator.create_pair_in_history()
      • BaseDatasetCollectionPopulator.create_list_in_history()
      • BaseDatasetCollectionPopulator.upload_collection()
      • BaseDatasetCollectionPopulator.create_list_payload()
      • BaseDatasetCollectionPopulator.create_pair_payload()
      • BaseDatasetCollectionPopulator.wait_for_fetched_collection()
      • BaseDatasetCollectionPopulator.pair_identifiers()
      • BaseDatasetCollectionPopulator.list_identifiers()
      • BaseDatasetCollectionPopulator.wait_for_dataset_collection()
    • DatasetCollectionPopulator
      • DatasetCollectionPopulator.__init__()
      • DatasetCollectionPopulator.dataset_populator
    • load_data_dict()
    • stage_inputs()
    • stage_rules_example()
    • wait_on_state()
    • GiHttpMixin
    • GiDatasetPopulator
      • GiDatasetPopulator.__init__()
    • GiDatasetCollectionPopulator
      • GiDatasetCollectionPopulator.__init__()
    • GiWorkflowPopulator
      • GiWorkflowPopulator.__init__()
    • wait_on()
    • wait_on_assertion()
  • galaxy_test.base.rules_test_data module
    • check_example_1()
    • check_example_2()
    • check_example_3()
    • check_example_4()
    • check_example_5()
    • check_example_6()
  • galaxy_test.base.testcase module
    • FunctionalTestCase
      • FunctionalTestCase.galaxy_driver_class
      • FunctionalTestCase.host
      • FunctionalTestCase.port
      • FunctionalTestCase.url
      • FunctionalTestCase.keepOutdir
      • FunctionalTestCase.test_data_resolver
      • FunctionalTestCase.setUp()
      • FunctionalTestCase.setUpClass()
      • FunctionalTestCase.tearDownClass()
      • FunctionalTestCase.get_filename()
      • FunctionalTestCase.pytestmark
  • galaxy_test.base.uses_shed module
  • galaxy_test.base.workflow_fixtures module
• galaxy_test.driver package
  • Submodules
  • galaxy_test.driver.driver_util module
    • copy_database_template()
    • build_logger()
    • drive_test()
    • database_conf()
    • get_webapp_global_conf()
    • setup_galaxy_config()
    • TestDriver
      • TestDriver.__init__()
      • TestDriver.setup()
      • TestDriver.tear_down()
      • TestDriver.stop_servers()
      • TestDriver.mkdtemp()
    • wait_for_http_server()
  • galaxy_test.driver.integration_setup module
    • get_posix_file_source_config()
    • create_file_source_config_file_on()
    • PosixFileSourceSetup
      • PosixFileSourceSetup.root_dir
      • PosixFileSourceSetup.include_test_data_dir
      • PosixFileSourceSetup.handle_galaxy_config_kwds()
  • galaxy_test.driver.integration_util module
    • skip_if_jenkins()
    • skip_unless_amqp()
    • skip_unless_postgres()
    • skip_unless_docker()
    • skip_unless_kubernetes()
    • k8s_config_path()
    • skip_unless_fixed_port()
    • skip_if_github_workflow()
    • skip_unless_environ()
    • IntegrationInstance
      • IntegrationInstance.prefer_template_database
      • IntegrationInstance.isolate_galaxy_config
      • IntegrationInstance.dataset_populator
      • IntegrationInstance.setUpClass()
      • IntegrationInstance.tearDownClass()
      • IntegrationInstance.tearDown()
      • IntegrationInstance.setUp()
      • IntegrationInstance.restart()
      • IntegrationInstance.temp_config_dir()
      • IntegrationInstance.history_id()
    • IntegrationTestCase
      • IntegrationTestCase.dataset_populator
      • IntegrationTestCase.url
    • integration_module_instance()
    • integration_tool_runner()
    • ConfiguresObjectStores
      • ConfiguresObjectStores.object_stores_parent
    • ConfiguresDatabaseVault
  • galaxy_test.driver.test_logging module
  • galaxy_test.driver.testcase module
    • DrivenFunctionalTestCase
      • DrivenFunctionalTestCase.galaxy_driver_class
      • DrivenFunctionalTestCase.host
      • DrivenFunctionalTestCase.port
      • DrivenFunctionalTestCase.url
      • DrivenFunctionalTestCase.keepOutdir
      • DrivenFunctionalTestCase.test_data_resolver
• galaxy_test.performance package
  • Submodules
  • galaxy_test.performance.test_workflow_framework_performance module
    • TestWorkflowFrameworkPerformance
      • TestWorkflowFrameworkPerformance.framework_tool_and_types
      • TestWorkflowFrameworkPerformance.setUp()
      • TestWorkflowFrameworkPerformance.test_run_simple()
      • TestWorkflowFrameworkPerformance.test_run_wave()
      • TestWorkflowFrameworkPerformance.test_run_two_output()
• galaxy_test.selenium package
  • Subpackages
    • galaxy_test.selenium.jupyter package
      • Example Notebooks
      • Developing Galaxy Test Cases Interactively with Jupyter
  • Submodules
  • galaxy_test.selenium.conftest module
    • real_driver()
    • embedded_driver()
  • galaxy_test.selenium.framework module
    • retry_during_transitions()
  • galaxy_test.selenium.jupyter_context module
    • JupyterTestContextImpl
      • JupyterTestContextImpl.__init__()
      • JupyterTestContextImpl.test_login()
      • JupyterTestContextImpl.url
      • JupyterTestContextImpl.target_url_from_selenium
      • JupyterTestContextImpl.configured_driver
      • JupyterTestContextImpl.timeout_multiplier
    • init()
  • galaxy_test.selenium.test_admin_app module
    • TestAdminApp
      • TestAdminApp.run_as_admin
      • TestAdminApp.test_html_allowlist()
      • TestAdminApp.test_admin_toolshed()
      • TestAdminApp.test_admin_dependencies_display()
      • TestAdminApp.test_admin_jobs_display()
      • TestAdminApp.test_admin_server_display()
      • TestAdminApp.test_admin_user_display()
      • TestAdminApp.test_admin_data_manager()
      • TestAdminApp.host
      • TestAdminApp.port
      • TestAdminApp.url
      • TestAdminApp.keepOutdir
      • TestAdminApp.test_data_resolver
  • galaxy_test.selenium.test_anon_history module
    • TestAnonymousHistories
      • TestAnonymousHistories.test_anon_history_landing()
      • TestAnonymousHistories.test_anon_history_upload()
      • TestAnonymousHistories.test_anon_history_after_registration()
      • TestAnonymousHistories.test_clean_anon_history_after_logout()
      • TestAnonymousHistories.host
      • TestAnonymousHistories.port
      • TestAnonymousHistories.url
      • TestAnonymousHistories.keepOutdir
      • TestAnonymousHistories.test_data_resolver
  • galaxy_test.selenium.test_change_password module
    • TestChangePassword
      • TestChangePassword.test_change_password()
      • TestChangePassword.test_new_password_password()
      • TestChangePassword.test_no_password_confirmation()
      • TestChangePassword.test_currect_password_incorrect()
      • TestChangePassword.test_new_password_short()
      • TestChangePassword.test_new_password_same_password()
      • TestChangePassword.register_and_change_password()
      • TestChangePassword.fill_input_fields()
      • TestChangePassword.host
      • TestChangePassword.port
      • TestChangePassword.url
      • TestChangePassword.keepOutdir
      • TestChangePassword.test_data_resolver
  • galaxy_test.selenium.test_collection_builders module
    • TestCollectionBuilders
      • TestCollectionBuilders.ensure_registered
      • TestCollectionBuilders.test_build_list_simple_hidden()
      • TestCollectionBuilders.test_build_list_and_show_items()
      • TestCollectionBuilders.test_build_pair_simple_hidden()
      • TestCollectionBuilders.test_build_paired_list_simple()
      • TestCollectionBuilders.test_build_paired_list_show_original()
      • TestCollectionBuilders.test_build_simple_list_via_rules_hidden()
      • TestCollectionBuilders.host
      • TestCollectionBuilders.port
      • TestCollectionBuilders.url
      • TestCollectionBuilders.keepOutdir
      • TestCollectionBuilders.test_data_resolver
  • galaxy_test.selenium.test_collection_edit module
    • TestCollectionEdit
      • TestCollectionEdit.ensure_registered
      • TestCollectionEdit.test_change_dbkey_simple_list()
      • TestCollectionEdit.test_change_datatype_simple_list()
      • TestCollectionEdit.open_collection_edit_view()
      • TestCollectionEdit.navigate_to_database_tab()
      • TestCollectionEdit.navigate_to_datatype_tab()
      • TestCollectionEdit.check_current_data_value()
      • TestCollectionEdit.change_dbkey_value_and_click_submit()
      • TestCollectionEdit.change_datatype_value_and_click_submit()
      • TestCollectionEdit.host
      • TestCollectionEdit.port
      • TestCollectionEdit.url
      • TestCollectionEdit.keepOutdir
      • TestCollectionEdit.test_data_resolver
  • galaxy_test.selenium.test_custom_builds module
    • TestCustomBuilds
      • TestCustomBuilds.user_email
      • TestCustomBuilds.build_name1
      • TestCustomBuilds.build_name2
      • TestCustomBuilds.build_key1
      • TestCustomBuilds.build_key2
      • TestCustomBuilds.test_build_add()
      • TestCustomBuilds.test_build_delete()
      • TestCustomBuilds.assert_custom_builds_in_grid()
      • TestCustomBuilds.add_custom_build()
      • TestCustomBuilds.delete_custom_build()
      • TestCustomBuilds.get_custom_builds()
      • TestCustomBuilds.navigate_to_custom_builds_page()
      • TestCustomBuilds.setup_shared_state()
  • galaxy_test.selenium.test_data_source_tools module
    • TestDataSource
      • TestDataSource.ensure_registered
      • TestDataSource.test_ucsc_table_direct1_data_source()
      • TestDataSource.host
      • TestDataSource.port
      • TestDataSource.url
      • TestDataSource.keepOutdir
      • TestDataSource.test_data_resolver
  • galaxy_test.selenium.test_dataset_metadata_download module
    • TestHistoryDatasetState
      • TestHistoryDatasetState.ensure_registered
      • TestHistoryDatasetState.test_dataset_metadata_download()
      • TestHistoryDatasetState.host
      • TestHistoryDatasetState.port
      • TestHistoryDatasetState.url
      • TestHistoryDatasetState.keepOutdir
      • TestHistoryDatasetState.test_data_resolver
  • galaxy_test.selenium.test_histories_list module
    • TestSavedHistories
      • TestSavedHistories.test_histories_list()
      • TestSavedHistories.test_history_switch()
      • TestSavedHistories.test_history_view()
      • TestSavedHistories.test_history_publish()
      • TestSavedHistories.test_rename_history()
      • TestSavedHistories.test_delete_and_undelete_history()
      • TestSavedHistories.test_permanently_delete_history()
      • TestSavedHistories.test_delete_and_undelete_multiple_histories()
      • TestSavedHistories.test_sort_by_name()
      • TestSavedHistories.test_standard_search()
      • TestSavedHistories.test_advanced_search()
      • TestSavedHistories.assert_histories_present()
      • TestSavedHistories.get_present_histories()
      • TestSavedHistories.test_tags()
      • TestSavedHistories.assert_grid_histories_are()
      • TestSavedHistories.assert_histories_in_grid()
      • TestSavedHistories.get_histories()
      • TestSavedHistories.add_tag()
      • TestSavedHistories.setup_shared_state()
      • TestSavedHistories.create_history()
      • TestSavedHistories.host
      • TestSavedHistories.port
      • TestSavedHistories.url
      • TestSavedHistories.keepOutdir
      • TestSavedHistories.test_data_resolver
  • galaxy_test.selenium.test_history_copy_elements module
    • TestHistoryCopyElements
      • TestHistoryCopyElements.ensure_registered
      • TestHistoryCopyElements.test_copy_hdca()
      • TestHistoryCopyElements.host
      • TestHistoryCopyElements.port
      • TestHistoryCopyElements.url
      • TestHistoryCopyElements.keepOutdir
      • TestHistoryCopyElements.test_data_resolver
  • galaxy_test.selenium.test_history_dataset_state module
    • TestHistoryDatasetState
      • TestHistoryDatasetState.ensure_registered
      • TestHistoryDatasetState.test_dataset_state()
      • TestHistoryDatasetState.test_dataset_change_dbkey()
      • TestHistoryDatasetState.test_dataset_state_discarded()
      • TestHistoryDatasetState.test_dataset_state_deferred()
      • TestHistoryDatasetState.host
      • TestHistoryDatasetState.port
      • TestHistoryDatasetState.url
      • TestHistoryDatasetState.keepOutdir
      • TestHistoryDatasetState.test_data_resolver
  • galaxy_test.selenium.test_history_export module
  • galaxy_test.selenium.test_history_multi_view module
    • TestHistoryMultiView
      • TestHistoryMultiView.ensure_registered
      • TestHistoryMultiView.test_display()
      • TestHistoryMultiView.test_list_list_display()
      • TestHistoryMultiView.prepare_multi_history_view()
      • TestHistoryMultiView.host
      • TestHistoryMultiView.port
      • TestHistoryMultiView.url
      • TestHistoryMultiView.keepOutdir
      • TestHistoryMultiView.test_data_resolver
  • galaxy_test.selenium.test_history_options module
    • TestHistoryOptions
      • TestHistoryOptions.test_options()
      • TestHistoryOptions.host
      • TestHistoryOptions.port
      • TestHistoryOptions.url
      • TestHistoryOptions.keepOutdir
      • TestHistoryOptions.test_data_resolver
  • galaxy_test.selenium.test_history_panel module
    • TestHistoryPanel
      • TestHistoryPanel.ensure_registered
      • TestHistoryPanel.test_history_panel_landing_state()
      • TestHistoryPanel.test_history_panel_rename()
      • TestHistoryPanel.test_history_rename_cancel_with_escape()
      • TestHistoryPanel.test_history_tags_and_annotations_buttons()
      • TestHistoryPanel.test_history_panel_annotations_change()
      • TestHistoryPanel.test_history_panel_tags_change()
      • TestHistoryPanel.open_tags()
      • TestHistoryPanel.clear_tags()
      • TestHistoryPanel.test_refresh_preserves_state()
      • TestHistoryPanel.assert_name_changed()
      • TestHistoryPanel.host
      • TestHistoryPanel.port
      • TestHistoryPanel.url
      • TestHistoryPanel.keepOutdir
      • TestHistoryPanel.test_data_resolver
  • galaxy_test.selenium.test_history_panel_collections module
    • TestHistoryPanelCollections
      • TestHistoryPanelCollections.ensure_registered
      • TestHistoryPanelCollections.test_mapping_collection_states_terminal()
      • TestHistoryPanelCollections.test_mapping_collection_states_running()
      • TestHistoryPanelCollections.test_output_collection_states_terminal()
      • TestHistoryPanelCollections.test_output_collection_states_running()
      • TestHistoryPanelCollections.test_collection_job_details()
      • TestHistoryPanelCollections.test_back_to_history_button()
      • TestHistoryPanelCollections.test_rename_collection()
      • TestHistoryPanelCollections.test_name_tags_display()
      • TestHistoryPanelCollections.test_paired_display()
      • TestHistoryPanelCollections.test_list_display()
      • TestHistoryPanelCollections.test_list_paired_display()
      • TestHistoryPanelCollections.test_list_list_display()
      • TestHistoryPanelCollections.host
      • TestHistoryPanelCollections.port
      • TestHistoryPanelCollections.url
      • TestHistoryPanelCollections.keepOutdir
      • TestHistoryPanelCollections.test_data_resolver
  • galaxy_test.selenium.test_history_panel_pagination module
  • galaxy_test.selenium.test_history_sharing module
    • TestHistorySharing
      • TestHistorySharing.test_sharing_valid()
      • TestHistorySharing.test_sharing_valid_by_id()
      • TestHistorySharing.test_unsharing()
      • TestHistorySharing.test_unshared_history_inaccessible()
      • TestHistorySharing.test_sharing_with_invalid_user()
      • TestHistorySharing.test_sharing_with_self()
      • TestHistorySharing.test_shared_with_me()
      • TestHistorySharing.setup_two_users_with_one_shared_history()
      • TestHistorySharing.share_history_with_user()
      • TestHistorySharing.host
      • TestHistorySharing.port
      • TestHistorySharing.url
      • TestHistorySharing.keepOutdir
      • TestHistorySharing.test_data_resolver
    • TestHistoryRequiresLoginSelenium
      • TestHistoryRequiresLoginSelenium.ensure_registered
      • TestHistoryRequiresLoginSelenium.test_share_history_login_redirect()
      • TestHistoryRequiresLoginSelenium.host
      • TestHistoryRequiresLoginSelenium.port
      • TestHistoryRequiresLoginSelenium.url
      • TestHistoryRequiresLoginSelenium.keepOutdir
      • TestHistoryRequiresLoginSelenium.test_data_resolver
  • galaxy_test.selenium.test_history_structure module
  • galaxy_test.selenium.test_invocation_grid module
    • TestInvocationGridSelenium
      • TestInvocationGridSelenium.ensure_registered
      • TestInvocationGridSelenium.test_grid()
      • TestInvocationGridSelenium.host
      • TestInvocationGridSelenium.port
      • TestInvocationGridSelenium.url
      • TestInvocationGridSelenium.keepOutdir
      • TestInvocationGridSelenium.test_data_resolver
  • galaxy_test.selenium.test_jupyter module
  • galaxy_test.selenium.test_library_contents module
    • TestLibraryContents
      • TestLibraryContents.run_as_admin
      • TestLibraryContents.test_sub_folder()
      • TestLibraryContents.test_import_dataset_from_history()
      • TestLibraryContents.download_dataset_from_library()
      • TestLibraryContents.test_delete_dataset()
      • TestLibraryContents.test_import_dataset_from_path()
      • TestLibraryContents.test_import_dataset_from_import_dir()
      • TestLibraryContents.test_show_details()
      • TestLibraryContents.host
      • TestLibraryContents.port
      • TestLibraryContents.url
      • TestLibraryContents.keepOutdir
      • TestLibraryContents.test_data_resolver
  • galaxy_test.selenium.test_library_landing module
    • TestLibraryLanding
      • TestLibraryLanding.run_as_admin
      • TestLibraryLanding.setup_with_driver()
      • TestLibraryLanding.test_create_new_close()
      • TestLibraryLanding.test_create_new()
      • TestLibraryLanding.test_rename()
      • TestLibraryLanding.test_sorting()
      • TestLibraryLanding.host
      • TestLibraryLanding.port
      • TestLibraryLanding.url
      • TestLibraryLanding.keepOutdir
      • TestLibraryLanding.test_data_resolver
  • galaxy_test.selenium.test_library_to_collections module
    • TestLibraryToCollections
      • TestLibraryToCollections.requires_admin
      • TestLibraryToCollections.test_library_collection_export_new_history()
      • TestLibraryToCollections.test_library_collection_export()
      • TestLibraryToCollections.test_library_pair_export_new_history()
      • TestLibraryToCollections.test_library_pair_export()
      • TestLibraryToCollections.test_export_pairs_list_new_history()
      • TestLibraryToCollections.test_export_pairs_list()
      • TestLibraryToCollections.prepare_library_for_data_export()
      • TestLibraryToCollections.build_collection_and_assert()
      • TestLibraryToCollections.collection_export()
      • TestLibraryToCollections.list_of_pairs_export()
      • TestLibraryToCollections.host
      • TestLibraryToCollections.port
      • TestLibraryToCollections.url
      • TestLibraryToCollections.keepOutdir
      • TestLibraryToCollections.test_data_resolver
  • galaxy_test.selenium.test_login module
    • TestLogin
      • TestLogin.test_login_accessibility()
      • TestLogin.test_logging_in()
      • TestLogin.test_invalid_logins()
      • TestLogin.test_invalid_passwords()
      • TestLogin.test_wrong_password()
      • TestLogin.host
      • TestLogin.port
      • TestLogin.url
      • TestLogin.keepOutdir
      • TestLogin.test_data_resolver
  • galaxy_test.selenium.test_navigates_galaxy module
    • TestNavigatesGalaxySelenium
      • TestNavigatesGalaxySelenium.test_click_error()
      • TestNavigatesGalaxySelenium.host
      • TestNavigatesGalaxySelenium.port
      • TestNavigatesGalaxySelenium.url
      • TestNavigatesGalaxySelenium.keepOutdir
      • TestNavigatesGalaxySelenium.test_data_resolver
  • galaxy_test.selenium.test_pages module
    • TestPages
      • TestPages.ensure_registered
      • TestPages.test_simple_page_creation_edit_and_view()
      • TestPages.test_workflow_problem_display()
      • TestPages.test_history_links()
      • TestPages.host
      • TestPages.port
      • TestPages.url
      • TestPages.keepOutdir
      • TestPages.test_data_resolver
  • galaxy_test.selenium.test_personal_information module
    • TestManageInformation
      • TestManageInformation.test_api_key()
      • TestManageInformation.test_change_email()
      • TestManageInformation.test_public_name()
      • TestManageInformation.test_user_address()
      • TestManageInformation.navigate_to_manage_information()
      • TestManageInformation.clear_input_field_and_write()
      • TestManageInformation.get_address_input_field()
      • TestManageInformation.host
      • TestManageInformation.port
      • TestManageInformation.url
      • TestManageInformation.keepOutdir
      • TestManageInformation.test_data_resolver
    • TestDeleteCurrentAccount
      • TestDeleteCurrentAccount.test_delete_account()
      • TestDeleteCurrentAccount.host
      • TestDeleteCurrentAccount.port
      • TestDeleteCurrentAccount.url
      • TestDeleteCurrentAccount.keepOutdir
      • TestDeleteCurrentAccount.test_data_resolver
  • galaxy_test.selenium.test_published_histories_grid module
  • galaxy_test.selenium.test_registration module
    • TestRegistration
      • TestRegistration.test_landing()
      • TestRegistration.test_registration()
      • TestRegistration.test_registration_accessibility()
      • TestRegistration.test_logout()
      • TestRegistration.test_reregister_email_fails()
      • TestRegistration.test_reregister_username_fails()
      • TestRegistration.test_bad_emails()
      • TestRegistration.test_short_password()
      • TestRegistration.test_password_confirmation()
      • TestRegistration.test_bad_usernames()
      • TestRegistration.host
      • TestRegistration.port
      • TestRegistration.url
      • TestRegistration.keepOutdir
      • TestRegistration.test_data_resolver
  • galaxy_test.selenium.test_sign_out module
    • TestSignOut
      • TestSignOut.test_sign_out()
      • TestSignOut.host
      • TestSignOut.port
      • TestSignOut.url
      • TestSignOut.keepOutdir
      • TestSignOut.test_data_resolver
  • galaxy_test.selenium.test_sizzle_loading module
    • TestSizzleLoading
      • TestSizzleLoading.test_sizzle_loads()
      • TestSizzleLoading.host
      • TestSizzleLoading.port
      • TestSizzleLoading.url
      • TestSizzleLoading.keepOutdir
      • TestSizzleLoading.test_data_resolver
  • galaxy_test.selenium.test_stock_tours module
    • TestStockToursTestCase
      • TestStockToursTestCase.test_core_galaxy_ui()
      • TestStockToursTestCase.test_core_windows()
      • TestStockToursTestCase.test_core_history()
      • TestStockToursTestCase.test_core_deferred()
      • TestStockToursTestCase.host
      • TestStockToursTestCase.port
      • TestStockToursTestCase.url
      • TestStockToursTestCase.keepOutdir
      • TestStockToursTestCase.test_data_resolver
    • TourCallback
      • TourCallback.__init__()
      • TourCallback.handle_step()
  • galaxy_test.selenium.test_tool_describing_tours module
    • TestToolDescribingTours
      • TestToolDescribingTours.setUp()
      • TestToolDescribingTours.test_generate_tour_no_data()
      • TestToolDescribingTours.test_generate_tour_with_data()
      • TestToolDescribingTours.host
      • TestToolDescribingTours.port
      • TestToolDescribingTours.url
      • TestToolDescribingTours.keepOutdir
      • TestToolDescribingTours.test_data_resolver
  • galaxy_test.selenium.test_tool_form module
    • TestToolForm
      • TestToolForm.test_run_tool_verify_contents_by_peek()
      • TestToolForm.test_run_tool_verify_dataset_details()
      • TestToolForm.test_verify_dataset_details_tables()
      • TestToolForm.test_drilldown_tool()
      • TestToolForm.click_menu_item()
      • TestToolForm.test_repeat_reordering()
      • TestToolForm.test_rerun()
      • TestToolForm.test_rerun_deleted_dataset()
      • TestToolForm.test_rerun_dataset_collection_element()
      • TestToolForm.test_run_data()
      • TestToolForm.test_bibtex_rendering()
      • TestToolForm.host
      • TestToolForm.port
      • TestToolForm.url
      • TestToolForm.keepOutdir
      • TestToolForm.test_data_resolver
    • TestLoggedInToolForm
      • TestLoggedInToolForm.ensure_registered
      • TestLoggedInToolForm.test_dataset_state_filtering()
      • TestLoggedInToolForm.test_run_apply_rules_1()
      • TestLoggedInToolForm.test_run_apply_rules_2()
      • TestLoggedInToolForm.test_run_apply_rules_3()
      • TestLoggedInToolForm.test_run_apply_rules_4()
      • TestLoggedInToolForm.test_run_apply_rules_tutorial()
      • TestLoggedInToolForm.host
      • TestLoggedInToolForm.port
      • TestLoggedInToolForm.url
      • TestLoggedInToolForm.keepOutdir
      • TestLoggedInToolForm.test_data_resolver
  • galaxy_test.selenium.test_uploads module
    • TestUploads
      • TestUploads.test_upload_file()
      • TestUploads.test_upload_pasted_content()
      • TestUploads.test_upload_pasted_url_content()
      • TestUploads.test_upload_composite_dataset_pasted_data()
      • TestUploads.test_upload_simplest()
      • TestUploads.test_upload_specify_ext()
      • TestUploads.test_upload_specify_genome()
      • TestUploads.test_upload_specify_ext_all()
      • TestUploads.test_upload_specify_genome_all()
      • TestUploads.test_upload_deferred()
      • TestUploads.test_upload_list()
      • TestUploads.test_upload_pair()
      • TestUploads.test_upload_pair_specify_extension()
      • TestUploads.test_upload_paired_list()
      • TestUploads.test_upload_modal_retains_content()
      • TestUploads.test_rules_example_1_datasets()
      • TestUploads.test_rules_example_2_list()
      • TestUploads.test_rules_example_3_list_pairs()
      • TestUploads.test_rules_example_4_accessions()
      • TestUploads.test_rules_example_5_matching_collections()
      • TestUploads.test_rules_example_6_nested_lists()
      • TestUploads.test_rules_deferred_datasets()
      • TestUploads.test_rules_deferred_list()
      • TestUploads.host
      • TestUploads.port
      • TestUploads.url
      • TestUploads.keepOutdir
      • TestUploads.test_data_resolver
  • galaxy_test.selenium.test_workflow_editor module
    • TestWorkflowEditor
      • TestWorkflowEditor.ensure_registered
      • TestWorkflowEditor.test_basics()
      • TestWorkflowEditor.test_edit_annotation()
      • TestWorkflowEditor.test_edit_name()
      • TestWorkflowEditor.test_edit_license()
      • TestWorkflowEditor.test_optional_select_data_field()
      • TestWorkflowEditor.test_data_input()
      • TestWorkflowEditor.test_collection_input()
      • TestWorkflowEditor.test_data_column_input_editing()
      • TestWorkflowEditor.test_integer_input()
      • TestWorkflowEditor.test_non_data_connections()
      • TestWorkflowEditor.test_non_data_map_over_carried_through()
      • TestWorkflowEditor.test_connecting_display_in_upload_false_connections()
      • TestWorkflowEditor.test_existing_connections()
      • TestWorkflowEditor.test_reconnecting_nodes()
      • TestWorkflowEditor.test_rendering_output_collection_connections()
      • TestWorkflowEditor.test_simple_mapping_connections()
      • TestWorkflowEditor.test_rendering_simple_nested_workflow()
      • TestWorkflowEditor.test_rendering_rules_workflow_1()
      • TestWorkflowEditor.test_rendering_rules_workflow_2()
      • TestWorkflowEditor.test_save_as()
      • TestWorkflowEditor.test_editor_tool_upgrade()
      • TestWorkflowEditor.test_editor_tool_upgrade_message()
      • TestWorkflowEditor.test_editor_subworkflow_tool_upgrade_message()
      • TestWorkflowEditor.set_text_element()
      • TestWorkflowEditor.test_change_datatype()
      • TestWorkflowEditor.test_change_datatype_post_job_action_lost_regression()
      • TestWorkflowEditor.test_change_datatype_in_subworkflow()
      • TestWorkflowEditor.test_edit_subworkflow()
      • TestWorkflowEditor.test_editor_duplicate_node()
      • TestWorkflowEditor.test_editor_embed_workflow()
      • TestWorkflowEditor.setup_subworkflow()
      • TestWorkflowEditor.test_editor_insert_steps()
      • TestWorkflowEditor.test_editor_create_conditional_step()
      • TestWorkflowEditor.test_conditional_subworkflow_step()
      • TestWorkflowEditor.switch_param_type()
      • TestWorkflowEditor.test_editor_invalid_tool_state()
      • TestWorkflowEditor.test_missing_tools()
      • TestWorkflowEditor.test_workflow_bookmarking()
      • TestWorkflowEditor.tab_to()
      • TestWorkflowEditor.test_aria_connections_menu()
      • TestWorkflowEditor.test_insert_input_handling()
      • TestWorkflowEditor.test_workflow_output_handling()
      • TestWorkflowEditor.test_map_over_output_indicator()
      • TestWorkflowEditor.test_editor_place_comments()
      • TestWorkflowEditor.test_editor_snapping()
      • TestWorkflowEditor.get_node_position()
      • TestWorkflowEditor.get_element_position()
      • TestWorkflowEditor.get_element_size()
      • TestWorkflowEditor.assert_node_output_is()
      • TestWorkflowEditor.workflow_editor_maximize_center_pane()
      • TestWorkflowEditor.workflow_editor_connect()
      • TestWorkflowEditor.assert_connected()
      • TestWorkflowEditor.assert_connection_invalid()
      • TestWorkflowEditor.assert_not_connected()
      • TestWorkflowEditor.open_in_workflow_editor()
      • TestWorkflowEditor.workflow_editor_source_sink_terminal_ids()
      • TestWorkflowEditor.workflow_editor_add_input()
      • TestWorkflowEditor.workflow_editor_destroy_connection()
      • TestWorkflowEditor.assert_input_mapped()
      • TestWorkflowEditor.assert_input_not_mapped()
      • TestWorkflowEditor.workflow_index_open_with_name()
      • TestWorkflowEditor.workflow_upload_yaml_with_random_name()
      • TestWorkflowEditor.assert_wf_name_is()
      • TestWorkflowEditor.assert_wf_annotation_is()
      • TestWorkflowEditor.assert_modal_has_text()
      • TestWorkflowEditor.move_center_of_canvas()
      • TestWorkflowEditor.host
      • TestWorkflowEditor.port
      • TestWorkflowEditor.url
      • TestWorkflowEditor.keepOutdir
      • TestWorkflowEditor.test_data_resolver
  • galaxy_test.selenium.test_workflow_invocation_details module
    • TestWorkflowInvocationDetails
      • TestWorkflowInvocationDetails.ensure_registered
      • TestWorkflowInvocationDetails.test_job_details()
      • TestWorkflowInvocationDetails.host
      • TestWorkflowInvocationDetails.port
      • TestWorkflowInvocationDetails.url
      • TestWorkflowInvocationDetails.keepOutdir
      • TestWorkflowInvocationDetails.test_data_resolver
  • galaxy_test.selenium.test_workflow_management module
    • TestWorkflowManagement
      • TestWorkflowManagement.ensure_registered
      • TestWorkflowManagement.test_import_from_url()
      • TestWorkflowManagement.test_import_accessibility()
      • TestWorkflowManagement.test_view()
      • TestWorkflowManagement.test_rename()
      • TestWorkflowManagement.test_workflow_index_accessibility()
      • TestWorkflowManagement.test_download()
      • TestWorkflowManagement.test_tagging()
      • TestWorkflowManagement.test_tag_filtering()
      • TestWorkflowManagement.test_index_search()
      • TestWorkflowManagement.test_index_search_filters()
      • TestWorkflowManagement.test_index_advanced_search()
      • TestWorkflowManagement.test_workflow_delete()
      • TestWorkflowManagement.host
      • TestWorkflowManagement.port
      • TestWorkflowManagement.url
      • TestWorkflowManagement.keepOutdir
      • TestWorkflowManagement.test_data_resolver
  • galaxy_test.selenium.test_workflow_run module
    • TestWorkflowRun
      • TestWorkflowRun.ensure_registered
      • TestWorkflowRun.test_simple_execution()
      • TestWorkflowRun.test_expanded_execution_of_simple_workflow()
      • TestWorkflowRun.test_runtime_parameters_simple()
      • TestWorkflowRun.test_subworkflows_expanded()
      • TestWorkflowRun.test_subworkflow_runtime_parameters()
      • TestWorkflowRun.test_replacement_parameters()
      • TestWorkflowRun.test_step_parameter_inputs()
      • TestWorkflowRun.test_replacement_parameters_on_subworkflows()
      • TestWorkflowRun.test_execution_with_tool_upgrade()
      • TestWorkflowRun.test_run_form_safe_upgrade_handling()
      • TestWorkflowRun.test_execution_with_multiple_inputs()
      • TestWorkflowRun.test_execution_with_text_default_value_connected_to_restricted_select()
      • TestWorkflowRun.test_execution_with_rules()
      • TestWorkflowRun.test_execution_with_custom_invocation_report()
      • TestWorkflowRun.test_execution_with_null_optional_select_from_data()
      • TestWorkflowRun.test_workflow_run_button_disabled_when_required_input_missing()
      • TestWorkflowRun.test_workflow_run_tag_filter()
      • TestWorkflowRun.host
      • TestWorkflowRun.port
      • TestWorkflowRun.url
      • TestWorkflowRun.keepOutdir
      • TestWorkflowRun.test_data_resolver
  • galaxy_test.selenium.test_workflow_sharing module
    • TestWorkflowSharingRedirect
      • TestWorkflowSharingRedirect.ensure_registered
      • TestWorkflowSharingRedirect.test_share_workflow_with_login_redirect()
      • TestWorkflowSharingRedirect.test_export_workflow_with_login_redirect()
      • TestWorkflowSharingRedirect.host
      • TestWorkflowSharingRedirect.port
      • TestWorkflowSharingRedirect.url
      • TestWorkflowSharingRedirect.keepOutdir
      • TestWorkflowSharingRedirect.test_data_resolver
    • TestWorkflowSharing
      • TestWorkflowSharing.test_sharing_workflow_by_email()
      • TestWorkflowSharing.test_sharing_workflow_by_id()
      • TestWorkflowSharing.test_unsharing_workflow()
      • TestWorkflowSharing.test_sharing_with_invalid_user()
      • TestWorkflowSharing.test_sharing_with_self()
      • TestWorkflowSharing.setup_two_users_with_one_shared_workflow()
      • TestWorkflowSharing.host
      • TestWorkflowSharing.port
      • TestWorkflowSharing.url
      • TestWorkflowSharing.keepOutdir
      • TestWorkflowSharing.test_data_resolver

Submodules

galaxy_test.conftest module

galaxy_test.conftest.celery_includes()

galaxy_test.conftest.real_driver()

galaxy_test.conftest.embedded_driver(real_driver, request)

galaxy_test.conftest.get_timings(test_uuid)

galaxy_test.conftest.pytest_configure(config)

class galaxy_test.conftest.JsonReportHooks

Bases: object

pytest_json_runtest_metadata(item, call)

pytest_json_modifyreport(json_report)