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galaxy_test.api package

Subpackages

Submodules

galaxy_test.api.sharable module

class galaxy_test.api.sharable.SharingApiTests[source]

Bases: UsesApiTestCaseMixin

Includes some tests for the sharing functionality of a particular resource type.

api_name: str
create(name: str) str[source]

Creates a shareable resource with the given name and returns it’s ID.

Parameters:

name – The name of the shareable resource to create.

Returns:

The ID of the resource.

test_sharing_get_status()[source]
test_sharing_access()[source]
test_sharing_publish()[source]
test_sharing_without_user()[source]
test_sharing_with_user_id()[source]
test_sharing_with_user_email()[source]
test_update_sharing_with_users()[source]
test_sharing_with_invalid_user()[source]
test_set_slug()[source]

galaxy_test.api.test_authenticate module

class galaxy_test.api.test_authenticate.TestAuthenticateApi[source]

Bases: ApiTestCase

test_auth()[source]
test_anon_history_creation()[source]

galaxy_test.api.test_configuration module

class galaxy_test.api.test_configuration.TestConfigurationApi[source]

Bases: ApiTestCase

test_whoami()[source]
test_normal_user_configuration()[source]
test_admin_user_configuration()[source]
test_normal_user_decode_id()[source]
test_version()[source]

galaxy_test.api.test_dataset_collections module

class galaxy_test.api.test_dataset_collections.TestDatasetCollectionsApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_create_pair_from_history()[source]
test_create_list_from_history()[source]
test_create_list_of_existing_pairs()[source]
test_create_list_of_new_pairs()[source]
test_list_download()[source]
test_pair_download()[source]
test_list_pair_download()[source]
test_list_list_download()[source]
test_list_list_list_download()[source]
test_download_non_english_characters()[source]
test_hda_security()[source]
test_dataset_collection_element_security()[source]
test_enforces_unique_names()[source]
test_upload_collection()[source]
test_upload_nested()[source]
test_upload_collection_from_url()[source]
test_upload_collection_deferred()[source]
test_upload_collection_failed_expansion_url()[source]
test_collection_contents_security(history_id)[source]
test_published_collection_contents_accessible(history_id)[source]
test_collection_contents_invalid_collection(history_id)[source]
test_show_dataset_collection(history_id)[source]
test_show_dataset_collection_contents(history_id)[source]
test_collection_contents_limit_offset(history_id)[source]
test_collection_contents_empty_root(history_id)[source]
test_get_suitable_converters_single_datatype(history_id)[source]
test_get_suitable_converters_different_datatypes_matches(history_id)[source]
test_get_suitable_converters_different_datatypes_no_matches(history_id)[source]
test_collection_tools_tag_propagation(history_id)[source]

galaxy_test.api.test_datasets module

class galaxy_test.api.test_datasets.TestDatasetsApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_index()[source]
test_index_using_keys(history_id)[source]
test_index_order_by_size()[source]
test_search_datasets()[source]
test_search_by_tag()[source]
test_search_by_tag_case_insensitive()[source]
test_search_by_tool_id()[source]
test_search_by_extension()[source]
test_search_returns_only_accessible(history_id)[source]
test_show(history_id)[source]
test_show_permission_denied(history_id)[source]
test_admin_can_update_permissions(history_id)[source]
test_display(history_id)[source]
test_display_error_handling(history_id)[source]
test_get_content_as_text(history_id)[source]
test_get_content_as_text_with_compressed_text_data(history_id)[source]
test_anon_get_content_as_text(history_id)[source]
test_anon_private_get_content_as_text(history_id)[source]
test_dataprovider_chunk(history_id)[source]
test_bam_chunking_through_display_endpoint(history_id)[source]
test_tabular_chunking_through_display_endpoint(history_id)[source]
test_connectivity_table_chunking_through_display_endpoint(history_id)[source]
test_head(history_id)[source]
test_byte_range_support(history_id)[source]
test_tag_change(history_id)[source]
test_anon_tag_permissions()[source]
test_update_datatype(history_id)[source]
test_delete_cancels_job(history_id)[source]
test_delete_cancels_job_with_query_params(history_id)[source]
test_delete_batch()[source]
test_delete_batch_error()[source]
test_composite_datatype_download(history_id)[source]
test_compute_md5_on_primary_dataset(history_id)[source]
test_compute_sha1_on_composite_dataset(history_id)[source]
test_duplicated_hash_requests_on_primary(history_id)[source]
test_duplicated_hash_requests_on_extra_files(history_id)[source]
assert_hash_value(dataset_details, expected_hash_value, hash_function, extra_files_path=None)[source]
test_storage_show(history_id)[source]
test_storage_show_on_discarded(history_id)[source]
test_storage_show_on_deferred(history_id)[source]
test_cannot_update_datatype_on_immutable_history(history_id)[source]

galaxy_test.api.test_datatypes module

class galaxy_test.api.test_datatypes.TestDatatypesApi[source]

Bases: ApiTestCase

test_index()[source]
test_index_upload_only()[source]
test_full_index()[source]
test_mapping()[source]
test_types_and_mapping()[source]
test_sniffers()[source]
test_converters()[source]
test_converter_present_after_toolbox_reload()[source]
test_edam_formats()[source]
test_edam_data()[source]

galaxy_test.api.test_display_applications module

class galaxy_test.api.test_display_applications.TestDisplayApplicationsApi[source]

Bases: ApiTestCase

test_index()[source]
test_reload_as_admin()[source]
test_reload_with_some_ids()[source]
test_reload_unknown_returns_as_failed()[source]
test_reload_as_non_admin_returns_403()[source]

galaxy_test.api.test_folder_contents module

class galaxy_test.api.test_folder_contents.TestFolderContentsApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_create_hda_with_ldda_message(history_id)[source]
test_create_hdca_with_ldda_message(history_id)[source]
test_index(history_id)[source]
test_index_include_deleted(history_id)[source]
test_index_pagination(history_id)[source]
test_index_search_text(history_id)[source]
test_index_permissions(history_id)[source]
test_index_permissions_include_deleted(history_id) None[source]
test_index_order_by(history_id)[source]

galaxy_test.api.test_folders module

class galaxy_test.api.test_folders.TestFoldersApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_create()[source]
test_list_library()[source]
test_create_without_name_raises_400()[source]
test_permissions()[source]
test_update()[source]
test_delete()[source]
test_undelete()[source]
test_import_folder_to_history()[source]
test_update_deleted_raise_403()[source]

galaxy_test.api.test_framework module

class galaxy_test.api.test_framework.TestApiFramework[source]

Bases: ApiTestCase

test_default_xframe_options()[source]
test_user_cannont_run_as()[source]
test_run_as_invalid_user()[source]
test_run_as_valid_user()[source]

galaxy_test.api.test_group_roles module

class galaxy_test.api.test_group_roles.TestGroupRolesApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_index(group_name: str | None = None)[source]
test_index_only_admin()[source]
test_index_unknown_group_raises_400()[source]
test_show()[source]
test_show_only_admin()[source]
test_show_unknown_raises_400()[source]
test_update()[source]
test_update_only_admin()[source]
test_delete()[source]
test_delete_only_admin()[source]
test_delete_unknown_raises_400()[source]

galaxy_test.api.test_group_users module

class galaxy_test.api.test_group_users.TestGroupUsersApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_index(group_name: str | None = None)[source]
test_index_only_admin()[source]
test_index_unknown_group_raises_400()[source]
test_show()[source]
test_show_only_admin()[source]
test_show_unknown_raises_400()[source]
test_update()[source]
test_update_only_admin()[source]
test_delete()[source]
test_delete_only_admin()[source]
test_delete_unknown_raises_400()[source]

galaxy_test.api.test_groups module

class galaxy_test.api.test_groups.TestGroupsApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_create_valid(group_name: str | None = None)[source]
test_create_only_admin()[source]
test_create_invalid_params_raises_400()[source]
test_create_duplicated_name_raises_409()[source]
test_index()[source]
test_index_only_admin()[source]
test_show()[source]
test_show_only_admin()[source]
test_show_unknown_raises_400()[source]
test_update()[source]
test_update_only_admin()[source]
test_update_duplicating_name_raises_409()[source]
test_delete()[source]
test_delete_duplicating_name_raises_409()[source]
test_purge()[source]
test_purge_can_reuse_name()[source]

galaxy_test.api.test_histories module

class galaxy_test.api.test_histories.BaseHistories[source]

Bases: object

class galaxy_test.api.test_histories.TestHistoriesApi[source]

Bases: ApiTestCase, BaseHistories

setUp()[source]
test_create_history()[source]
test_create_history_json()[source]
test_show_history()[source]
test_show_history_returns_expected_urls()[source]
test_show_respects_view()[source]
test_show_most_recently_used()[source]
test_index_order()[source]
test_index_query()[source]
test_index_views()[source]
test_index_search_mode_views()[source]
test_index_case_insensitive_contains_query()[source]
test_index_advanced_filter()[source]
test_delete()[source]
test_purge()[source]
test_undelete()[source]
test_update()[source]
test_update_invalid_attribute()[source]
test_update_invalid_types()[source]
test_invalid_keys()[source]
test_create_anonymous_fails()[source]
test_create_without_session_fails()[source]
test_create_tag()[source]
test_copy_history()[source]
test_import_from_model_store_dict()[source]
test_anonymous_can_import_published()[source]
test_immutable_history_update_fails()[source]
test_immutable_history_cannot_add_datasets()[source]
test_cannot_modify_tags_on_immutable_history()[source]
test_histories_count()[source]
class galaxy_test.api.test_histories.ImportExportTests[source]

Bases: BaseHistories

task_based: ClassVar[bool]
test_import_export()[source]
test_import_1901_histories()[source]
test_import_export_include_deleted()[source]
test_import_export_failed_job()[source]
test_import_metadata_regeneration()[source]
test_import_export_collection()[source]
test_import_export_nested_collection()[source]
class galaxy_test.api.test_histories.TestImportExportHistory[source]

Bases: ApiTestCase, ImportExportTests

task_based: ClassVar[bool] = False
setUp()[source]
class galaxy_test.api.test_histories.TestSharingHistory[source]

Bases: ApiTestCase, BaseHistories, SharingApiTests

Tests specific for the particularities of sharing Histories.

api_name: str = 'histories'
create(name: str) str[source]

Creates a shareable resource with the given name and returns it’s ID.

Parameters:

name – The name of the shareable resource to create.

Returns:

The ID of the resource.

setUp()[source]
test_sharing_with_private_datasets()[source]
test_sharing_without_manage_permissions()[source]
test_sharing_empty_not_allowed()[source]
test_sharing_with_duplicated_users()[source]
test_sharing_private_history_makes_datasets_public()[source]
class galaxy_test.api.test_histories.TestArchivingHistoriesWithoutExportRecord[source]

Bases: ApiTestCase, BaseHistories

setUp()[source]
test_archive()[source]
test_other_users_cannot_archive_history()[source]
test_restore()[source]
test_other_users_cannot_restore_history()[source]
test_archived_histories_index()[source]
test_archived_histories_filtering_and_sorting()[source]
test_archiving_an_archived_history_conflicts()[source]
test_archived_histories_are_not_listed_by_default()[source]

galaxy_test.api.test_history_contents module

class galaxy_test.api.test_history_contents.TestHistoryContentsApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_index_hda_summary(history_id)[source]
test_make_private_and_public(history_id)[source]
test_set_permissions_add_admin_history_contents(history_id)[source]
test_set_permissions_add_admin_datasets(history_id)[source]
test_index_hda_all_details(history_id)[source]
test_index_hda_detail_by_id(history_id)[source]
test_index_detail_parameter_error(history_id)[source]
test_view_and_keys_parameters_for_datasets(history_id)[source]
test_view_and_keys_parameters_for_collections(history_id)[source]
test_show_hda(history_id)[source]
test_hda_copy(history_id)[source]
test_inheritance_chain(history_id)[source]
test_library_copy(history_id)[source]
test_update(history_id)[source]
test_update_batch(history_id)[source]
test_update_batch_collections(history_id)[source]
test_update_type_failures(history_id)[source]
test_delete(history_id)[source]
test_delete_anon()[source]
test_delete_permission_denied(history_id)[source]
test_purge(history_id)[source]
test_dataset_collection_creation_on_contents(history_id)[source]
test_dataset_collection_creation_on_typed_contents(history_id)[source]
test_dataset_collection_create_from_exisiting_datasets_with_new_tags()[source]
test_jobs_summary_simple_hdca(history_id)[source]
test_jobs_summary_implicit_hdca(history_id)[source]
test_dataset_collection_hide_originals(history_id)[source]
test_update_dataset_collection(history_id)[source]
test_update_batch_dataset_collection(history_id)[source]
test_hdca_copy(history_id)[source]
test_hdca_copy_with_new_dbkey(history_id)[source]
test_hdca_copy_and_elements(history_id)[source]
test_hdca_from_library_datasets(history_id)[source]
test_hdca_from_inaccessible_library_datasets(history_id)[source]
test_job_state_summary_field(history_id)[source]
test_index_filter_by_type(history_id)[source]
test_index_filter_by_name_ignores_case(history_id)[source]
test_elements_datatypes_field(history_id)[source]
test_cannot_run_tools_on_immutable_histories(history_id)[source]
test_cannot_update_dataset_collection_on_immutable_history(history_id)[source]
test_cannot_update_dataset_on_immutable_history(history_id)[source]
class galaxy_test.api.test_history_contents.TestHistoryContentsApiBulkOperation[source]

Bases: ApiTestCase

Test the /api/histories/{history_id}/contents/bulk endpoint and the new count special view for /api/histories/{history_id}/contents?v=dev

setUp()[source]
test_explicit_items_selection()[source]
test_dynamic_query_selection()[source]
test_bulk_operations()[source]
test_purging_collection_should_purge_contents()[source]
test_deleting_collection_should_delete_contents()[source]
test_only_owner_can_apply_bulk_operations()[source]
test_bulk_tag_changes()[source]
test_bulk_dbkey_change()[source]
test_bulk_dbkey_change_dataset_collection()[source]
test_bulk_datatype_change()[source]
test_bulk_datatype_change_collection()[source]
test_bulk_datatype_change_should_skip_set_metadata_on_deferred_data()[source]
test_bulk_datatype_change_errors()[source]
test_bulk_datatype_change_auto()[source]
test_index_returns_expected_total_matches()[source]
test_index_with_stats_fails_with_non_orm_filters()[source]
test_index_with_stats_has_extra_serialization()[source]

galaxy_test.api.test_history_contents_provenance module

class galaxy_test.api.test_history_contents_provenance.TestProvenance[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_get_prov()[source]

galaxy_test.api.test_jobs module

class galaxy_test.api.test_jobs.TestJobsApi[source]

Bases: ApiTestCase, TestsTools

dataset_populator: DatasetPopulator
setUp()[source]
test_index(history_id)[source]
test_system_details_admin_only(history_id)[source]
test_admin_job_list(history_id)[source]
test_job_list_collection_view(history_id)[source]
test_job_list_default_view(history_id)[source]
test_index_state_filter(history_id)[source]
test_index_date_filter(history_id)[source]
test_index_history(history_id)[source]
test_index_workflow_and_invocation_filter(history_id)[source]
test_index_workflow_filter_implicit_jobs(history_id)[source]
test_index_limit_and_offset_filter(history_id)[source]
test_index_search_filter_tool_id(history_id)[source]
test_index_search_filter_email(history_id)[source]
test_index_user_filter()[source]
test_index_handler_runner_filters(history_id)[source]
test_index_multiple_states_filter(history_id)[source]
test_show(history_id)[source]
test_show_security(history_id)[source]
test_unhide_on_error()[source]
test_no_unhide_on_error_if_mapped_over()[source]
test_no_hide_on_rerun()[source]
test_common_problems()[source]
test_report_error()[source]
test_report_error_anon()[source]
test_report_error_bootstrap_admin()[source]
test_deleting_output_keep_running_until_all_deleted(history_id)[source]
test_purging_output_keep_running_until_all_purged(history_id)[source]
test_purging_output_cleaned_after_ok_run(history_id)[source]
test_resume_job(history_id)[source]
test_search_handle_identifiers(history_id)[source]
test_search_delete_outputs(history_id)[source]
test_implicit_collection_jobs(history_id)[source]
test_search_with_hdca_list_input(history_id)[source]
test_search_delete_hdca_output(history_id)[source]
test_search_with_hdca_pair_input(history_id)[source]
test_search_with_hdca_list_pair_input(history_id)[source]
test_search_with_hdca_list_pair_collection_mapped_over_pair_input(history_id)[source]
test_job_build_for_rerun(history_id)[source]
test_dce_submission_security(history_id)[source]
test_job_build_for_rerun_list_list(history_id)[source]
test_get_inputs_and_outputs(history_id)[source]
test_delete_job(history_id)[source]
test_destination_params(history_id)[source]
test_job_metrics(history_id)[source]
test_parameters_display(history_id)[source]

galaxy_test.api.test_libraries module

class galaxy_test.api.test_libraries.TestLibrariesApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_create()[source]
test_create_from_store()[source]
test_index()[source]
test_delete()[source]
test_nonadmin()[source]
test_update()[source]
test_update_non_admins_with_permission()[source]
test_create_private_library_legacy_permissions()[source]
test_create_private_library_permissions()[source]
test_get_library_current_permissions()[source]
test_get_library_available_permissions()[source]
test_get_library_available_permissions_with_query()[source]
test_create_library_dataset_bootstrap_user(library_name='private_dataset', wait=True)[source]
test_create_dataset_denied()[source]
test_create_dataset_bootstrap_admin_user()[source]
test_show_private_dataset_permissions()[source]
test_create_dataset()[source]
test_fetch_upload_to_folder()[source]
test_fetch_zip_to_folder()[source]
test_fetch_single_url_to_folder()[source]
test_fetch_single_url_with_invalid_datatype()[source]
test_legacy_upload_unknown_datatype()[source]
test_fetch_failed_validation()[source]
test_fetch_url_archive_to_folder()[source]
test_fetch_bagit_archive_to_folder()[source]
test_create_dataset_in_folder()[source]
test_create_dataset_in_subfolder()[source]
test_update_dataset_in_folder()[source]
test_update_dataset_tags()[source]
test_invalid_update_dataset_in_folder()[source]
test_detect_datatype_of_dataset_in_folder()[source]
test_ldda_collection_import_to_history()[source]
test_ldda_collection_import_to_history_hide_source()[source]
test_import_paired_collection()[source]
test_create_datasets_in_library_from_collection()[source]
test_create_datasets_in_folder_from_collection()[source]

galaxy_test.api.test_licenses module

class galaxy_test.api.test_licenses.TestLicensesApi[source]

Bases: ApiTestCase

test_index()[source]
test_get_license()[source]
test_404_on_unknown_license()[source]

galaxy_test.api.test_page_revisions module

class galaxy_test.api.test_page_revisions.TestPageRevisionsApi[source]

Bases: BasePagesApiTestCase

test_create()[source]
test_403_if_create_revision_on_unowned_page()[source]
test_revision_index()[source]
test_malformed_id_if_index_unknown_page()[source]
dataset_populator: DatasetPopulator

galaxy_test.api.test_pages module

class galaxy_test.api.test_pages.BasePagesApiTestCase[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
class galaxy_test.api.test_pages.TestPagesApi[source]

Bases: BasePagesApiTestCase, SharingApiTests

api_name: str = 'pages'
create(name: str) str[source]

Creates a shareable resource with the given name and returns it’s ID.

Parameters:

name – The name of the shareable resource to create.

Returns:

The ID of the resource.

test_create()[source]
test_create_from_report()[source]
test_index()[source]
test_400_on_index_deleted_shared()[source]
test_index_deleted()[source]
test_index_user_id_security()[source]
test_index_user_published()[source]
test_index_show_published()[source]
test_index_show_shared_with_me()[source]
test_index_show_shared_with_me_deleted()[source]
test_index_owner()[source]
test_index_ordering()[source]
test_index_limit_offset()[source]
test_index_search_slug()[source]
test_index_search_title()[source]
test_index_search_sharing_tags()[source]
test_index_does_not_show_unavailable_pages()[source]
test_cannot_create_pages_with_same_slug()[source]
test_cannot_create_pages_with_invalid_slug()[source]
test_cannot_create_page_with_invalid_content_format()[source]
test_page_requires_name()[source]
test_page_requires_slug()[source]
test_delete()[source]
test_400_on_delete_invalid_page_id()[source]
test_403_on_delete_unowned_page()[source]
test_400_on_invalid_id_encoding()[source]
test_400_on_invalid_id_encoding_markdown()[source]
test_400_on_invalid_embedded_content()[source]
test_400_on_invalid_markdown_call()[source]
test_show()[source]
test_403_on_unowner_show()[source]
test_501_on_download_pdf_when_service_unavailable()[source]
test_pdf_when_service_available()[source]
test_400_on_download_pdf_when_unsupported_content_format()[source]
dataset_populator: DatasetPopulator
host: str
port: str | None
url: str
keepOutdir: str
test_data_resolver: TestDataResolver

galaxy_test.api.test_roles module

class galaxy_test.api.test_roles.TestRolesApi[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_list_and_show()[source]
test_create_invalid_params()[source]
test_create_valid()[source]
test_show_error_codes()[source]
test_create_only_admin()[source]
test_delete()[source]
test_delete_duplicating_name_raises_409()[source]
test_purge()[source]
test_purge_can_reuse_name()[source]
static check_role_dict(role_dict: Dict[str, Any], assert_id: str | None = None) None[source]

galaxy_test.api.test_search module

galaxy_test.api.test_tool_data module

Tests for the tool data API.

The tests for the DELETE endpoint can be found in the integration tests directory (tests/integration/test_tool_data_delete.py) since these tests can mutate the server config state.

class galaxy_test.api.test_tool_data.TestToolDataApi[source]

Bases: ApiTestCase

test_admin_only()[source]
test_list()[source]
test_show()[source]
test_show_field()[source]
test_download_field_file()[source]
test_reload()[source]
test_show_unknown_raises_404()[source]
test_show_unknown_field_raises_404()[source]
test_reload_unknown_raises_404()[source]
test_download_field_unknown_file_raises_404()[source]
test_delete_without_payload_raises_400()[source]
test_delete_without_values_raises_400()[source]
test_delete_with_wrong_values_raises_400()[source]

galaxy_test.api.test_tools module

class galaxy_test.api.test_tools.TestsTools[source]

Bases: object

dataset_populator: DatasetPopulator
dataset_collection_populator: BaseDatasetCollectionPopulator
class galaxy_test.api.test_tools.TestToolsApi[source]

Bases: ApiTestCase, TestsTools

dataset_populator: DatasetPopulator
setUp()[source]
test_index()[source]
test_search_cat()[source]
test_search_trimmer()[source]
test_search_grep()[source]
test_no_panel_index()[source]
test_requirements()[source]
test_show_repeat()[source]
test_show_conditional()[source]
test_show_multi_data()[source]
test_show_output_collection()[source]
test_data_source_build_request()[source]
test_legacy_biotools_xref_injection()[source]
test_data_source_ok_request()[source]
test_data_source_sniff_fastqsanger()[source]
test_data_sources_block_file_parameters()[source]
test_model_attributes_sanitization()[source]
test_test_data_filepath_security()[source]
test_test_data_admin_security()[source]
test_data_table_requirement_annotated()[source]
test_test_data_composite_output()[source]
test_test_data_collection_two_paired()[source]
test_test_data_collection_nested()[source]
test_test_data_null_boolean_inputs()[source]
test_test_data_yaml_tools()[source]
test_test_data_download()[source]
test_test_data_downloads_security()[source]
test_test_data_download_composite()[source]
test_convert_dataset_explicit_history()[source]
test_convert_dataset_implicit_history()[source]
test_convert_hdca()[source]
test_unzip_collection()[source]
test_unzip_nested()[source]
test_zip_inputs()[source]
test_collection_operation_dataset_input_permissions()[source]
test_collection_operation_collection_input_permissions()[source]
test_zip_list_inputs()[source]
test_database_operation_tool_with_pending_inputs()[source]
test_extract_dataset_invalid_element_identifier()[source]
test_filter_failed_list()[source]
test_filter_failed_list_paired()[source]
test_apply_rules_1()[source]
test_apply_rules_2()[source]
test_apply_rules_3()[source]
test_apply_rules_4()[source]
test_apply_rules_5()[source]
test_apply_rules_6()[source]
test_dataset_hidden_after_job_finish()[source]
test_multi_select_as_list()[source]
test_multi_select_optional()[source]
test_library_data_param()[source]
test_multidata_param()[source]
test_run_cat1()[source]
test_run_cat1_use_cached_job()[source]
test_run_cat1_listified_param()[source]
test_run_by_versions()[source]
test_test_by_versions()[source]
test_show_with_wrong_tool_version_in_tool_id()[source]
test_run_cat1_single_meta_wrapper()[source]
test_guess_derived_permissions()[source]
test_guess_derived_permissions_collections(history_id)[source]
test_validation(history_id)[source]
test_validation_empty_dataset(history_id)[source]
test_validation_in_repeat(history_id)[source]
test_collection_parameter(history_id)[source]
test_paired_collection_output(history_id)[source]
test_list_collection_output(history_id)[source]
test_list_collection_output_format_source(history_id)[source]
test_dynamic_list_output(history_id)[source]
test_dynamic_list_output_datasets_in_failed_state(history_id)[source]
test_nonadmin_users_cannot_create_tools()[source]
test_dynamic_tool_1()[source]
test_dynamic_tool_from_path()[source]
test_dynamic_tool_no_id()[source]
test_show_dynamic_tools()[source]
test_show_tool_source_admin()[source]
test_show_tool_source_denied()[source]
test_tool_deactivate()[source]
test_run_cat1_with_two_inputs(history_id)[source]
test_bam_state_regression(history_id)[source]
test_qc_messages(history_id)[source]
test_multirun_cat1(history_id)[source]
test_multirun_non_data_parameter(history_id)[source]
test_multirun_in_repeat()[source]
test_multirun_in_repeat_mismatch()[source]
test_multirun_on_multiple_inputs()[source]
test_multirun_on_multiple_inputs_unlinked()[source]
test_dynamic_parameter_error_handling()[source]
test_map_over_collection(history_id)[source]
test_map_over_empty_collection(history_id)[source]
test_map_over_with_output_format_actions(history_id)[source]
test_map_over_with_nested_paired_output_format_actions(history_id)[source]
test_map_over_with_output_filter_no_filtering(history_id)[source]
test_map_over_with_output_filter_on_optional_input(history_id)[source]
test_map_over_with_output_filter_one_filtered(history_id)[source]
test_map_over_with_complex_output_actions(history_id)[source]
test_map_over_with_discovered_output_collection_elements(history_id)[source]
test_identifier_in_map(history_id)[source]
test_identifier_outside_map(history_id)[source]
test_list_selectable_in_multidata_input(history_id)[source]
test_identifier_in_multiple_reduce(history_id)[source]
test_identifier_map_over_multiple_input_in_conditional(history_id)[source]
test_identifier_map_over_multiple_input_in_conditional_new_payload_form(history_id)[source]
test_identifier_multiple_reduce_in_repeat_new_payload_form(history_id)[source]
test_identifier_map_over_input_in_conditional(history_id)[source]
test_identifier_multiple_reduce_in_conditional(history_id)[source]
test_identifier_multiple_reduce_in_repeat(history_id)[source]
test_identifier_single_in_repeat(history_id)[source]
test_identifier_multiple_in_conditional(history_id)[source]
test_identifier_with_multiple_normal_datasets(history_id)[source]
test_identifier_with_data_collection(history_id)[source]
test_identifier_in_actions(history_id)[source]
test_map_over_nested_collections(history_id)[source]
test_paired_input_map_over_nested_collections(history_id)[source]
test_paired_input_conditional_map_over_nested_collections(history_id)[source]
test_map_over_two_collections(history_id)[source]
test_map_over_two_collections_unlinked(history_id)[source]
test_map_over_collected_and_individual_datasets(history_id)[source]
test_default_identifier_source_map_over()[source]
test_map_over_collection_output()[source]
test_cannot_map_over_incompatible_collections()[source]
test_map_over_collection_structured_like()[source]
test_map_over_collection_type_source()[source]
test_reduce_collections_legacy()[source]
test_reduce_collections()[source]
test_implicit_reduce_with_mapping()[source]
test_implicit_conversion_and_reduce()[source]
test_implicit_conversion_and_reduce_invalid_param()[source]
test_reduce_collections_in_repeat()[source]
test_reduce_collections_in_repeat_legacy()[source]
test_reduce_multiple_lists_on_multi_data()[source]
test_subcollection_mapping()[source]
test_combined_mapping_and_subcollection_mapping()[source]
test_group_tag_selection(history_id)[source]
test_group_tag_selection_multiple(history_id)[source]
test_galaxy_expression_tool_simplest()[source]
test_galaxy_expression_tool_simple()[source]
test_galaxy_expression_metadata()[source]
test_run_deferred_dataset(history_id)[source]
test_run_deferred_dataset_with_metadata_options_filter(history_id)[source]
test_metadata_validator_on_deferred_input(history_id)[source]
test_metadata_validator_can_fail_on_deferred_input(history_id)[source]
test_run_deferred_mapping(history_id: str)[source]
test_run_deferred_list_multi_data_reduction(history_id: str)[source]
test_run_deferred_nested_list_input(history_id: str)[source]
test_deferred_map_over_nested_collections(history_id)[source]
galaxy_test.api.test_tools.dataset_to_param(dataset)[source]

galaxy_test.api.test_tools_upload module

class galaxy_test.api.test_tools_upload.TestToolsUpload[source]

Bases: ApiTestCase

dataset_populator: DatasetPopulator
setUp()[source]
test_upload1_paste()[source]
test_upload1_paste_bad_datatype()[source]
test_upload_posix_newline_fixes_by_default()[source]
test_fetch_posix_unaltered()[source]
test_upload_disable_posix_fix()[source]
test_fetch_post_lines_option()[source]
test_post_lines_trailing()[source]
test_post_lines_trailing_off()[source]
test_fetch_post_lines_trailing_off_by_default()[source]
test_fetch_post_lines_trailing_if_to_posix()[source]
test_upload_tab_to_space_off_by_default()[source]
test_fetch_tab_to_space_off_by_default()[source]
test_upload_tab_to_space()[source]
test_fetch_tab_to_space()[source]
test_fetch_tab_to_space_doesnt_swap_newlines()[source]
test_fetch_compressed_with_explicit_type()[source]
test_fetch_compressed_default()[source]
test_fetch_compressed_auto_decompress_target(history_id)[source]
test_upload_decompress_off_with_auto_by_default()[source]
test_upload_decompresses_if_uncompressed_type_selected()[source]
test_upload_decompress_off_if_compressed_type_selected()[source]
test_upload_auto_decompress_off()[source]
test_fetch_compressed_with_auto(history_id)[source]
test_rdata_not_decompressed()[source]
test_csv_upload()[source]
test_csv_upload_auto()[source]
test_csv_fetch()[source]
test_csv_sniff_fetch()[source]
test_image_upload_auto()[source]
test_newlines_stage_fetch(history_id: str) None[source]
test_stage_object(history_id: str) None[source]
test_stage_object_fetch(history_id: str) None[source]
test_newlines_stage_fetch_configured(history_id: str) None[source]
test_stage_fetch_decompress_true(history_id: str) None[source]
test_stage_fetch_decompress_false(history_id: str) None[source]
test_upload_multiple_mixed_success(history_id)[source]
test_fetch_bam_file_from_url_with_extension_set(history_id)[source]
test_fetch_html_from_url(history_id)[source]
test_abort_fetch_job(history_id)[source]
test_composite_datatype()[source]
test_composite_datatype_fetch(history_id)[source]
test_composite_datatype_stage_fetch(history_id: str) None[source]
test_composite_datatype_pbed_stage_fetch(history_id: str) None[source]
test_composite_datatype_stage_upload1(history_id: str) None[source]
test_composite_datatype_space_to_tab(history_id)[source]
test_composite_datatype_posix_lines()[source]
test_composite_datatype_isatab()[source]
test_upload_composite_as_tar(history_id)[source]
test_upload_composite_as_tar_fetch(history_id)[source]
test_upload_composite_from_bad_tar(history_id)[source]
test_upload_dbkey()[source]
test_fetch_bam_file(history_id)[source]
test_upload_bam_file()[source]
test_fetch_metadata()[source]
test_upload_multiple_files_1()[source]
test_upload_multiple_files_2()[source]
test_upload_multiple_files_3()[source]
test_upload_multiple_files_no_dbkey()[source]
test_upload_multiple_files_space_to_tab()[source]
test_multiple_files_posix_lines()[source]
test_upload_force_composite()[source]
test_upload_from_invalid_url()[source]
test_upload_from_404_url()[source]
test_upload_from_valid_url()[source]
test_upload_from_valid_url_spaces()[source]
test_upload_and_validate_invalid()[source]
test_upload_and_validate_valid()[source]
test_upload_dataset_resumable()[source]
test_upload_deferred(history_id)[source]

galaxy_test.api.test_tours module

class galaxy_test.api.test_tours.TestToursApi[source]

Bases: ApiTestCase

test_index()[source]
test_show()[source]
test_update()[source]

galaxy_test.api.test_users module

class galaxy_test.api.test_users.TestUsersApi[source]

Bases: ApiTestCase

test_index()[source]
test_index_only_self_for_nonadmins()[source]
test_show()[source]
test_update()[source]
test_admin_update()[source]
test_delete_user()[source]
test_purge_user()[source]

Delete user and then purge them.

test_undelete_user()[source]

Delete user and then undelete them.

test_delete_user_cancel_all_jobs()[source]
test_information()[source]
test_manage_api_key()[source]
test_only_admin_can_manage_other_users_api_key()[source]
test_favorites()[source]
test_search_favorites()[source]
test_set_theme()[source]
test_show_delete()[source]
test_show_current()[source]
test_manage_beacon_settings()[source]

galaxy_test.api.test_visualizations module

class galaxy_test.api.test_visualizations.TestVisualizationsApi[source]

Bases: ApiTestCase, SharingApiTests

api_name: str = 'visualizations'
create(_: str) str[source]

Creates a shareable resource with the given name and returns it’s ID.

Parameters:

name – The name of the shareable resource to create.

Returns:

The ID of the resource.

test_index_and_show()[source]
test_index_ordering()[source]
test_index_filtering()[source]
test_create()[source]
test_create_fails_without_title()[source]
test_create_fails_with_bad_slug()[source]
test_create_fails_with_invalid_config()[source]
test_sharing()[source]
test_update_title()[source]

galaxy_test.api.test_webhooks module

class galaxy_test.api.test_webhooks.TestWebhooksApi[source]

Bases: ApiTestCase

setUp()[source]
test_get_all()[source]
test_get_data()[source]

galaxy_test.api.test_workflow_extraction module

class galaxy_test.api.test_workflow_extraction.TestWorkflowExtractionApi[source]

Bases: BaseWorkflowsApiTestCase

test_extract_from_history(history_id)[source]
test_extract_with_copied_inputs(history_id)[source]
test_extract_with_copied_inputs_reimported(history_id)[source]
test_extract_mapping_workflow_from_history(history_id)[source]
test_extract_copied_mapping_from_history(history_id)[source]
test_extract_copied_mapping_from_history_reimported(history_id)[source]
test_extract_reduction_from_history(history_id)[source]
test_extract_workflows_with_dataset_collections(history_id)[source]
test_subcollection_mapping(history_id)[source]
test_subcollection_reduction(history_id)[source]
test_extract_workflow_with_output_collections(history_id)[source]
test_extract_with_mapped_output_collections(history_id)[source]
dataset_populator: DatasetPopulator
class galaxy_test.api.test_workflow_extraction.RunJobsSummary(history_id, workflow_id, inputs, jobs)

Bases: tuple

history_id

Alias for field number 0

inputs

Alias for field number 2

jobs

Alias for field number 3

workflow_id

Alias for field number 1

galaxy_test.api.test_workflows module

class galaxy_test.api.test_workflows.RunsWorkflowFixtures[source]

Bases: object

workflow_populator: WorkflowPopulator
class galaxy_test.api.test_workflows.BaseWorkflowsApiTestCase[source]

Bases: ApiTestCase, RunsWorkflowFixtures

dataset_populator: DatasetPopulator
setUp()[source]
import_workflow(workflow, **kwds)[source]
class galaxy_test.api.test_workflows.ChangeDatatypeTests[source]

Bases: object

dataset_populator: DatasetPopulator
workflow_populator: WorkflowPopulator
test_assign_column_pja()[source]
class galaxy_test.api.test_workflows.TestWorkflowSharingApi[source]

Bases: ApiTestCase, SharingApiTests

api_name: str = 'workflows'
create(name: str) str[source]

Creates a shareable resource with the given name and returns it’s ID.

Parameters:

name – The name of the shareable resource to create.

Returns:

The ID of the resource.

setUp()[source]
class galaxy_test.api.test_workflows.TestWorkflowsApi[source]

Bases: BaseWorkflowsApiTestCase, ChangeDatatypeTests

dataset_populator: DatasetPopulator
test_show_valid()[source]
test_show_subworkflow()[source]
test_show_invalid_key_is_400()[source]
test_cannot_show_private_workflow()[source]
test_cannot_download_private_workflow()[source]
test_anon_can_download_importable_workflow()[source]
test_anon_can_download_public_workflow()[source]
test_anon_can_see_workflow_preview()[source]
test_delete()[source]
test_other_cannot_delete()[source]
test_undelete()[source]
test_other_cannot_undelete()[source]
test_index()[source]
test_index_deleted()[source]
test_index_hidden()[source]
test_index_ordering()[source]
test_index_sort_by()[source]
test_index_limit_and_offset()[source]
test_index_show_shared()[source]
test_index_skip_step_counts()[source]
test_index_search_name()[source]
test_index_search_name_exact_vs_inexact()[source]
test_index_search_tags()[source]
test_index_search_tags_multiple()[source]
test_search_casing()[source]
test_index_search_tags_exact()[source]
test_index_published()[source]
test_index_search_is_tags()[source]
test_index_owner()[source]
test_index_parameter_invalid_combinations()[source]
test_index_total_matches()[source]
test_upload()[source]
test_upload_deprecated()[source]
test_import_tools_requires_admin()[source]
test_update()[source]
test_update_tags()[source]
test_update_name()[source]
test_update_name_empty()[source]
test_workflow_run_form_with_broken_dataset()[source]
test_refactor()[source]
test_refactor_tool_state_upgrade()[source]
test_update_no_tool_id()[source]
test_update_missing_tool()[source]
test_require_unique_step_uuids()[source]
test_require_unique_step_labels()[source]
test_import_deprecated()[source]
test_import_export_dynamic()[source]
test_import_annotations()[source]
test_import_subworkflows()[source]
test_subworkflow_inputs_optional_editor()[source]
test_not_importable_prevents_import()[source]
test_url_import()[source]
test_base64_import()[source]
test_trs_import()[source]
test_trs_import_from_dockstore_trs_url()[source]
test_trs_import_from_workflowhub_trs_url()[source]
test_anonymous_published()[source]
test_import_published()[source]
test_import_published_api()[source]
test_export()[source]
test_export_format2()[source]
test_export_editor()[source]
test_export_editor_filtered_outputs()[source]
test_export_editor_filtered_outputs_exception_handling()[source]
test_export_editor_collection_type_source()[source]
test_export_editor_subworkflow_collection_type_source()[source]
test_import_missing_tool()[source]
test_import_no_tool_id()[source]
test_import_export_with_runtime_inputs()[source]
test_run_workflow_by_index()[source]
test_run_workflow_by_uuid()[source]
test_run_workflow_by_uuid_implicitly()[source]
test_run_workflow_by_name()[source]
test_run_workflow()[source]
test_run_versioned_tools()[source]
test_workflow_run_output_collections() None[source]
test_workflow_resume_from_failed_step()[source]
test_workflow_resume_from_failed_step_with_hdca_input()[source]
test_workflow_resume_with_mapped_over_input()[source]
test_workflow_resume_with_mapped_over_collection_input()[source]
test_workflow_list_list_multi_data_map_over()[source]
test_workflow_run_output_collection_mapping()[source]
test_workflow_run_dynamic_output_collections()[source]
test_workflow_run_dynamic_output_collections_2()[source]
test_workflow_run_dynamic_output_collections_3()[source]
test_workflow_input_tags()[source]
test_empty_file_data_column_specified()[source]
test_comma_separated_columns()[source]
test_comma_separated_columns_with_trailing_newline()[source]
test_runtime_data_column_parameter()[source]
test_workflow_metadata_validation_0()[source]
test_run_workflow_pick_value_bam_pja()[source]
test_run_workflow_simple_conditional_step()[source]
test_run_workflow_simple_conditional_step_with_nested_tool_state()[source]
test_run_workflow_invalid_when_expression()[source]
test_run_workflow_fails_when_expression_not_boolean()[source]
test_run_workflow_subworkflow_conditional_with_simple_mapping_step()[source]
test_run_workflow_subworkflow_conditional_step()[source]
test_run_nested_conditional_workflow_steps()[source]
test_run_workflow_conditional_step_map_over_expression_tool()[source]
test_run_workflow_conditional_subworkflow_step_map_over_expression_tool()[source]
test_run_workflow_conditional_subworkflow_step_map_over_expression_tool_with_extra_nesting()[source]
test_run_workflow_conditional_subworkflow_step_map_over_expression_tool_with_extra_nesting_skip_all()[source]
test_run_workflow_conditional_step_map_over_expression_tool_pick_value()[source]
test_run_subworkflow_simple() None[source]
test_run_subworkflow_runtime_parameters()[source]
test_run_subworkflow_replacement_parameters()[source]
test_placements_from_text_inputs()[source]
test_placements_from_text_inputs_nested()[source]
test_run_runtime_parameters_after_pause()[source]
test_run_subworkflow_auto_labels()[source]
test_workflow_run_zip_collections()[source]
test_workflow_flatten()[source]
test_workflow_flatten_with_mapped_over_execution()[source]
test_workflow_invocation_report_1()[source]
test_workflow_invocation_report_custom()[source]
test_export_invocation_bco()[source]
test_export_invocation_ro_crate()[source]
test_merge_collection_scheduling(history_id)[source]
test_export_invocation_ro_crate_adv()[source]
test_workflow_run_apply_rules()[source]
test_filter_failed_mapping()[source]
test_keep_success_mapping_error()[source]
test_keep_success_mapping_paused()[source]
test_workflow_request()[source]
test_workflow_new_autocreated_history()[source]
test_workflow_output_dataset()[source]
test_workflow_output_dataset_collection()[source]
test_workflow_input_as_output()[source]
test_subworkflow_output_as_output()[source]
test_workflow_input_mapping()[source]
test_workflow_run_input_mapping_with_output_collections()[source]
test_workflow_run_input_mapping_with_subworkflows()[source]
test_subworkflow_recover_mapping_1()[source]
test_subworkflow_recover_mapping_2()[source]
test_recover_mapping_in_subworkflow()[source]
test_empty_list_mapping()[source]
test_subworkflow_map_over_data_column()[source]
test_run_with_implicit_collection_map_over()[source]
test_change_datatype_collection_map_over()[source]
test_change_datatype_discovered_outputs()[source]
test_mapping_and_subcollection_mapping()[source]
test_empty_list_reduction()[source]
test_cancel_new_workflow_when_history_deleted()[source]
test_cancel_ready_workflow_when_history_deleted()[source]
test_workflow_pause()[source]
test_workflow_pause_cancel()[source]
test_workflow_map_reduce_pause()[source]
test_cancel_workflow_invocation()[source]
test_cancel_workflow_invocation_deletes_jobs()[source]
test_workflow_failed_output_not_found(history_id)[source]
test_workflow_warning_workflow_output_not_found(history_id)[source]
test_workflow_failed_input_not_ok(history_id)[source]
test_workflow_failed_with_message_exception(history_id)[source]
test_invocation_map_over(history_id)[source]
test_invocation_map_over_inner_collection(history_id)[source]
test_invocation_map_over_inner_collection_with_tool_collection_input(history_id)[source]
test_pause_outputs_with_deleted_inputs()[source]
test_error_outputs_with_purged_inputs()[source]
test_run_with_implicit_connection()[source]
test_run_with_optional_data_specified_to_multi_data()[source]
test_run_with_optional_data_unspecified_to_multi_data()[source]
test_run_with_optional_data_unspecified_survives_delayed_step()[source]
test_run_subworkflow_with_optional_data_unspecified()[source]
test_run_with_non_optional_data_unspecified_fails_invocation()[source]
test_run_with_optional_collection_specified()[source]
test_run_with_optional_collection_unspecified()[source]
test_run_with_non_optional_collection_unspecified_fails_invocation()[source]
test_run_with_validated_parameter_connection_optional()[source]
test_run_with_int_parameter()[source]
test_run_with_int_parameter_nested()[source]
test_run_with_validated_parameter_connection_default_values()[source]
test_run_with_default_file_dataset_input()[source]
test_run_with_default_file_dataset_input_and_explicit_input()[source]
test_run_with_default_file_in_step_inline()[source]
test_run_with_validated_parameter_connection_invalid()[source]
test_run_with_text_input_connection()[source]
test_run_with_numeric_input_connection(history_id)[source]
test_expression_tool_map_over(history_id)[source]
test_workflow_optional_input_text_parameter_reevaluation()[source]
test_workflow_rerun_with_use_cached_job()[source]
test_workflow_rerun_with_cached_job_consumes_implicit_hdca(history_id: str)[source]
test_nested_workflow_rerun_with_use_cached_job()[source]
test_cannot_run_inaccessible_workflow()[source]
test_400_on_invalid_workflow_id()[source]
test_cannot_run_against_other_users_history()[source]
test_cannot_run_workflow_as_anon()[source]
test_cannot_run_bootstrap_admin_workflow()[source]
test_workflow_run_with_matching_lists()[source]
test_workflow_stability()[source]
test_empty_create()[source]
test_invalid_create_multiple_types()[source]
test_run_with_pja()[source]
test_hidden_param_in_workflow()[source]
test_optional_workflow_output()[source]
test_workflow_optional_input_filtering()[source]
test_run_rename_on_mapped_over_collection()[source]
test_run_rename_based_on_inputs_on_mapped_over_collection()[source]
test_run_rename_collection_output()[source]
test_run_build_list_hide_collection_output()[source]
test_run_build_list_delete_intermediate_collection_output()[source]
test_run_build_list_change_datatype_collection_output()[source]
test_run_build_list_change_datatype_new_metadata_file_parameter()[source]
test_run_build_list_rename_collection_output()[source]
test_run_rename_multiple_outputs()[source]
test_run_rename_based_on_input()[source]
test_run_rename_when_resuming_jobs()[source]
test_run_rename_based_on_input_recursive()[source]
test_run_rename_based_on_input_repeat()[source]
test_run_rename_based_on_input_conditional()[source]
test_run_rename_based_on_input_conditional_legacy_pja_reference()[source]
test_run_rename_based_on_input_collection()[source]
test_run_hide_on_collection_output()[source]
test_run_hide_on_mapped_over_collection()[source]
test_tag_auto_propagation()[source]
test_run_add_tag_on_collection_output()[source]
test_run_add_tag_on_mapped_over_collection()[source]
test_run_remove_tag_on_collection_output()[source]
test_run_add_tag_on_database_operation_output()[source]
test_run_with_runtime_pja()[source]
test_run_with_delayed_runtime_pja()[source]
test_delete_intermediate_datasets_pja_1()[source]
test_validated_post_job_action_validated()[source]
test_validated_post_job_action_unvalidated_default()[source]
test_validated_post_job_action_invalid()[source]
test_value_restriction_with_select_and_text_param()[source]
test_value_restriction_with_select_from_subworkflow_input()[source]
test_run_replace_params_by_tool()[source]
test_run_replace_params_by_uuid()[source]
test_run_batch()[source]
test_run_batch_inputs()[source]
test_parameter_substitution_sanitization()[source]
test_parameter_substitution_validation_value_errors_0()[source]
test_parameter_substitution_validation_value_errors_1()[source]
test_workflow_import_state_validation_1()[source]
test_subworkflow_import_order_maintained(history_id)[source]
test_run_replace_params_by_steps()[source]
test_run_replace_params_nested()[source]
test_run_replace_params_nested_normalized()[source]
test_run_replace_params_over_default()[source]
test_defaults_editor()[source]
test_empty_collection_sort(history_id)[source]
test_run_replace_params_over_default_delayed()[source]
test_pja_import_export()[source]
test_invocation_filtering()[source]
test_only_own_invocations_indexed_and_accessible()[source]
test_invocation_usage()[source]
test_invocation_with_collection_mapping()[source]
test_invocations_accessible_imported_workflow()[source]
test_invocations_accessible_published_workflow()[source]
test_invocations_not_accessible_by_different_user_for_published_workflow()[source]
test_invocation_filtering_exclude_subworkflow()[source]
test_workflow_publishing()[source]
test_workflow_from_path_requires_admin()[source]
test_cannot_run_workflow_on_immutable_history() None[source]
test_subworkflow_tags()[source]
class galaxy_test.api.test_workflows.TestAdminWorkflowsApi[source]

Bases: BaseWorkflowsApiTestCase

require_admin_user = True
test_import_export_dynamic_tools(history_id)[source]
dataset_populator: DatasetPopulator
host: str
port: str | None
url: str
keepOutdir: str
test_data_resolver: TestDataResolver
workflow_populator: WorkflowPopulator

galaxy_test.api.test_workflows_cwl module

Test CWL workflow functionality.

class galaxy_test.api.test_workflows_cwl.BaseCwlWorkflowsApiTestCase[source]

Bases: BaseWorkflowsApiTestCase

allow_path_paste = True
require_admin_user = True
setUp()[source]
dataset_populator: DatasetPopulator
host: str
port: str | None
url: str
keepOutdir: str
test_data_resolver: TestDataResolver
workflow_populator: WorkflowPopulator

galaxy_test.api.test_workflows_from_yaml module

class galaxy_test.api.test_workflows_from_yaml.TestWorkflowsFromYamlApi[source]

Bases: BaseWorkflowsApiTestCase

setUp()[source]
test_simple_upload()[source]
test_simple_output_actions()[source]
test_inputs_to_steps()[source]
test_outputs()[source]
test_runtime_inputs()[source]
test_subworkflow_simple()[source]
test_subworkflow_duplicate()[source]
test_pause()[source]
test_implicit_connections()[source]
test_conditional_ints(history_id)[source]
test_workflow_embed_tool()[source]
test_workflow_import_tool()[source]
test_parameter_default_rep()[source]
dataset_populator: DatasetPopulator
host: str
port: str | None
url: str
keepOutdir: str
test_data_resolver: TestDataResolver
workflow_populator: WorkflowPopulator