Galaxy Project
24.1
Release Notes
Releases
24.1 Galaxy Release (June 2024)
24.0 Galaxy Release (March 2024)
23.2 Galaxy Release (January 2024)
23.1 Galaxy Release (June 2023)
23.0 Galaxy Release (April 2023)
May 2022 Galaxy Release (v 22.05)
January 2022 Galaxy Release (v 22.01)
September 2021 Galaxy Release (v 21.09)
May 2021 Galaxy Release (v 21.05)
January 2021 Galaxy Release (v 21.01)
September 2020 Galaxy Release (v 20.09)
May 2020 Galaxy Release (v 20.05)
January 2020 Galaxy Release (v 20.01)
September 2019 Galaxy Release (v 19.09)
May 2019 Galaxy Release (v 19.05)
January 2019 Galaxy Release (v 19.01)
September 2018 Galaxy Release (v 18.09)
May 2018 Galaxy Release (v 18.05)
January 2018 Galaxy Release (v 18.01)
September 2017 Galaxy Release (v 17.09)
May 2017 Galaxy Release (v 17.05)
January 2017 Galaxy Release (v 17.01)
October 2016 Galaxy Release (v 16.10)
July 2016 Galaxy Release (v 16.07)
April 2016 Galaxy Release (v 16.04)
January 2016 Galaxy Release (v 16.01)
October 2015 Galaxy Release (v 15.10)
July 2015 Galaxy Release (v 15.07)
May 2015 Galaxy Release (v 15.05)
March 2015 Galaxy Release (v 15.03)
January 2015 Galaxy Release (v 15.01)
October 2014 Galaxy Release (v 14.10)
August 2014 Galaxy Release (v 14.08)
June 2014 Galaxy Release (v 14.06)
April 2014 Galaxy Release (v 14.04)
February 2014 Galaxy Release (v 14.02)
November 2013 Galaxy Release (v 13.11)
August 2013 Galaxy Release (v 13.08)
June 2013 Galaxy Release (v 13.06)
April 2013 Galaxy Release (v 13.04)
February 2013 Galaxy Release (v 13.02)
January 2013 Galaxy Release (v 13.01)
Galaxy Releases older than v 13.01
Admin Documentation
Administration
Supported Python versions
Framework Dependencies
Galaxy Configuration
Logging Configuration
Production Environments
Connecting Users and Data
Security considerations
Proxying Galaxy with NGINX
Proxying Galaxy with Apache
Scaling and Load Balancing
Connecting to a Cluster
Galaxy Job Configuration
Collecting Job Metrics
Authentication
Tool Panel Administration
Tool data
Message queue
Dependency Resolvers in Galaxy
Containers in Galaxy
Conda for Tool Dependencies
Galaxy Database Schema Migrations
Galaxy Reports
Scripts & Tricks
Configuration Options
Migrating from uWSGI to Gunicorn and FastAPI
Special topics
Galaxy FTP Uploads
Galaxy InteractiveTools
Containers for Tool Dependencies
Galactic Radio Telescope
Galaxy Training Materials Webhook
Job Metrics
Galaxy Webhooks
Storing secrets in the vault
Galaxy Performance Tracking
Bug Reports
GDPR Compliance
Developer Documentation
Development
Galaxy Tool XML File
API Design Guidelines
How SQLAlchemy sessions are handled in Galaxy
Build a job runner
Finding and improving slow Galaxy code
Data managers
Data Types
How Do I…
Writing Tests for Galaxy
Debugging Galaxy Tests
Debugging tests that run out of memory
Debugging Galaxy
Debugging Galaxy: Slurm Compute Cluster
Translating the Interface
Creating Galaxy Releases
Creating Galaxy Point Releases
Galaxy API
Quickstart
Documentation
Tool Shed API
API Documentation
Application Documentation
galaxy package
galaxy_ext package
galaxy_test package
tool_shed package
About Project
Project Governance
Procedure Documents
Committers
Release branches
Handling Pull Requests
Issue Reporting
Galaxy Release Process
Major or Long Term Support (LTS) Releases
Minor Releases
Point Releases
Release Schedule
Release Notes
Issue Management
Issue Reporting
Milestones
Labeling Structure
The Roadmap
Voting
Automation
Galaxy Project
Special Topics
View page source
Special Topics
Galaxy FTP Uploads
Install some FTP server
Configure Galaxy
Allow your FTP server to read Galaxy’s database
Configuring ProFTPD
Further security measures
Other Links
Galaxy InteractiveTools
How Galaxy InteractiveTools work
Some important benefits of using Galaxy InteractiveTools
Server-side configuration of Galaxy InteractiveTools
Containers for Tool Dependencies
Automatic build of Linux containers
Galactic Radio Telescope
Registration
About the Script
Data Privacy
Data Collection Process
Data Submission
Galaxy Training Materials Webhook
Click to Run
Proxy Setup
Job Metrics
Configuration
Available Plugins
Viewing Collected Data
Developing New Plugins
Future Plans
Galaxy Webhooks
Plugin activation
Entry points
Plugin structure
config.yml
__init__.py
static files
Plugin dependencies
Issues
tool/workflow
Storing secrets in the vault
Vault backends
Configuring Galaxy
Configuring vault_conf.yml
Vault configuration for Hashicorp Vault
Vault configuration for Custos
Vault configuration for database
Configuring user preferences to use the vault
Configuring file sources to use (user) secrets stored in a vault
Galaxy Performance Tracking
Gunicorn
API / Route Timing Statistics
Bug Reports
Email
JSON
Sentry
InfluxDB
GitHub
GDPR Compliance
Audience
Configuration
Log Redaction
User Deletion
Backups
Tool Shed Specific
Current Version
v: 24.1
Versions
dev
stable
24.1
24.0
23.2
23.1
23.0
22.05
22.01
21.09
21.05
21.01
20.09
20.05
20.01
19.09
19.05
19.01
18.09
18.05
18.01
17.09
17.05