Galaxy Project
24.1

Release Notes

  • Releases
    • 24.1 Galaxy Release (June 2024)
    • 24.0 Galaxy Release (March 2024)
    • 23.2 Galaxy Release (January 2024)
    • 23.1 Galaxy Release (June 2023)
    • 23.0 Galaxy Release (April 2023)
    • May 2022 Galaxy Release (v 22.05)
    • January 2022 Galaxy Release (v 22.01)
    • September 2021 Galaxy Release (v 21.09)
    • May 2021 Galaxy Release (v 21.05)
    • January 2021 Galaxy Release (v 21.01)
    • September 2020 Galaxy Release (v 20.09)
    • May 2020 Galaxy Release (v 20.05)
    • January 2020 Galaxy Release (v 20.01)
    • September 2019 Galaxy Release (v 19.09)
    • May 2019 Galaxy Release (v 19.05)
    • January 2019 Galaxy Release (v 19.01)
    • September 2018 Galaxy Release (v 18.09)
    • May 2018 Galaxy Release (v 18.05)
    • January 2018 Galaxy Release (v 18.01)
    • September 2017 Galaxy Release (v 17.09)
    • May 2017 Galaxy Release (v 17.05)
    • January 2017 Galaxy Release (v 17.01)
    • October 2016 Galaxy Release (v 16.10)
    • July 2016 Galaxy Release (v 16.07)
    • April 2016 Galaxy Release (v 16.04)
    • January 2016 Galaxy Release (v 16.01)
    • October 2015 Galaxy Release (v 15.10)
    • July 2015 Galaxy Release (v 15.07)
    • May 2015 Galaxy Release (v 15.05)
    • March 2015 Galaxy Release (v 15.03)
    • January 2015 Galaxy Release (v 15.01)
    • October 2014 Galaxy Release (v 14.10)
    • August 2014 Galaxy Release (v 14.08)
    • June 2014 Galaxy Release (v 14.06)
    • April 2014 Galaxy Release (v 14.04)
    • February 2014 Galaxy Release (v 14.02)
    • November 2013 Galaxy Release (v 13.11)
    • August 2013 Galaxy Release (v 13.08)
    • June 2013 Galaxy Release (v 13.06)
    • April 2013 Galaxy Release (v 13.04)
    • February 2013 Galaxy Release (v 13.02)
    • January 2013 Galaxy Release (v 13.01)
    • Galaxy Releases older than v 13.01

Admin Documentation

  • Administration
    • Supported Python versions
    • Framework Dependencies
    • Galaxy Configuration
    • Logging Configuration
    • Production Environments
    • Connecting Users and Data
    • Security considerations
    • Proxying Galaxy with NGINX
    • Proxying Galaxy with Apache
    • Scaling and Load Balancing
    • Connecting to a Cluster
    • Galaxy Job Configuration
    • Collecting Job Metrics
    • Authentication
    • Tool Panel Administration
    • Tool data
    • Message queue
    • Dependency Resolvers in Galaxy
    • Containers in Galaxy
    • Conda for Tool Dependencies
    • Galaxy Database Schema Migrations
    • Galaxy Reports
    • Scripts & Tricks
    • Configuration Options
    • Migrating from uWSGI to Gunicorn and FastAPI
  • Special topics
    • Galaxy FTP Uploads
    • Galaxy InteractiveTools
    • Containers for Tool Dependencies
    • Galactic Radio Telescope
    • Galaxy Training Materials Webhook
    • Job Metrics
    • Galaxy Webhooks
    • Storing secrets in the vault
    • Galaxy Performance Tracking
    • Bug Reports
    • GDPR Compliance

Developer Documentation

  • Development
    • Galaxy Tool XML File
    • API Design Guidelines
    • How SQLAlchemy sessions are handled in Galaxy
    • Build a job runner
    • Finding and improving slow Galaxy code
    • Data managers
    • Data Types
    • How Do I…
    • Writing Tests for Galaxy
    • Debugging Galaxy Tests
    • Debugging tests that run out of memory
    • Debugging Galaxy
    • Debugging Galaxy: Slurm Compute Cluster
    • Translating the Interface
    • Creating Galaxy Releases
    • Creating Galaxy Point Releases
  • Galaxy API
    • Quickstart
    • Documentation
  • Tool Shed API
    • API Documentation
  • Application Documentation
    • galaxy package
    • galaxy_ext package
    • galaxy_test package
    • tool_shed package

About Project

  • Project Governance
    • Procedure Documents
    • Committers
    • Release branches
    • Handling Pull Requests
    • Issue Reporting
  • Galaxy Release Process
    • Major or Long Term Support (LTS) Releases
    • Minor Releases
    • Point Releases
    • Release Schedule
    • Release Notes
  • Issue Management
    • Issue Reporting
    • Milestones
    • Labeling Structure
    • The Roadmap
    • Voting
    • Automation
Galaxy Project
  • Special Topics
  • View page source

Special Topics

  • Galaxy FTP Uploads
    • Install some FTP server
    • Configure Galaxy
    • Allow your FTP server to read Galaxy’s database
    • Configuring ProFTPD
    • Further security measures
    • Other Links
  • Galaxy InteractiveTools
    • How Galaxy InteractiveTools work
    • Some important benefits of using Galaxy InteractiveTools
    • Server-side configuration of Galaxy InteractiveTools
  • Containers for Tool Dependencies
    • Automatic build of Linux containers
  • Galactic Radio Telescope
    • Registration
    • About the Script
    • Data Privacy
    • Data Collection Process
    • Data Submission
  • Galaxy Training Materials Webhook
    • Click to Run
    • Proxy Setup
  • Job Metrics
    • Configuration
    • Available Plugins
    • Viewing Collected Data
    • Developing New Plugins
    • Future Plans
  • Galaxy Webhooks
    • Plugin activation
    • Entry points
    • Plugin structure
    • config.yml
    • __init__.py
    • static files
    • Plugin dependencies
    • Issues
    • tool/workflow
  • Storing secrets in the vault
    • Vault backends
    • Configuring Galaxy
    • Configuring vault_conf.yml
    • Vault configuration for Hashicorp Vault
    • Vault configuration for Custos
    • Vault configuration for database
    • Configuring user preferences to use the vault
    • Configuring file sources to use (user) secrets stored in a vault
  • Galaxy Performance Tracking
    • Gunicorn
    • API / Route Timing Statistics
  • Bug Reports
    • Email
    • JSON
    • Sentry
    • InfluxDB
    • GitHub
  • GDPR Compliance
    • Audience
    • Configuration
    • Log Redaction
    • User Deletion
    • Backups
    • Tool Shed Specific
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