Galaxy Project
23.1

Release Notes

  • Releases
    • June 2023 Galaxy Release (v 23.1)
    • 2023 Galaxy Release (v 23.0)
    • May 2022 Galaxy Release (v 22.05)
    • January 2022 Galaxy Release (v 22.01)
    • September 2021 Galaxy Release (v 21.09)
    • May 2021 Galaxy Release (v 21.05)
    • January 2021 Galaxy Release (v 21.01)
    • September 2020 Galaxy Release (v 20.09)
    • May 2020 Galaxy Release (v 20.05)
    • January 2020 Galaxy Release (v 20.01)
    • September 2019 Galaxy Release (v 19.09)
    • May 2019 Galaxy Release (v 19.05)
    • January 2019 Galaxy Release (v 19.01)
    • September 2018 Galaxy Release (v 18.09)
    • May 2018 Galaxy Release (v 18.05)
    • January 2018 Galaxy Release (v 18.01)
    • September 2017 Galaxy Release (v 17.09)
    • May 2017 Galaxy Release (v 17.05)
    • January 2017 Galaxy Release (v 17.01)
    • October 2016 Galaxy Release (v 16.10)
    • July 2016 Galaxy Release (v 16.07)
    • April 2016 Galaxy Release (v 16.04)
    • January 2016 Galaxy Release (v 16.01)
    • October 2015 Galaxy Release (v 15.10)
    • July 2015 Galaxy Release (v 15.07)
    • May 2015 Galaxy Release (v 15.05)
    • March 2015 Galaxy Release (v 15.03)
    • January 2015 Galaxy Release (v 15.01)
    • October 2014 Galaxy Release (v 14.10)
    • August 2014 Galaxy Release (v 14.08)
    • June 2014 Galaxy Release (v 14.06)
    • April 2014 Galaxy Release (v 14.04)
    • February 2014 Galaxy Release (v 14.02)
    • November 2013 Galaxy Release (v 13.11)
    • August 2013 Galaxy Release (v 13.08)
    • June 2013 Galaxy Release (v 13.06)
    • April 2013 Galaxy Release (v 13.04)
    • February 2013 Galaxy Release (v 13.02)
    • January 2013 Galaxy Release (v 13.01)
    • Galaxy Releases older than v 13.01

Admin Documentation

  • Administration
    • Supported Python versions
    • Framework Dependencies
    • Galaxy Configuration
    • Logging Configuration
    • Production Environments
    • Security considerations
    • Proxying Galaxy with NGINX
    • Proxying Galaxy with Apache
    • Scaling and Load Balancing
    • Connecting to a Cluster
    • Galaxy Job Configuration
    • Authentication
    • Tool Panel Administration
    • Message queue
    • Dependency Resolvers in Galaxy
    • Containers in Galaxy
    • Other considerations
    • Conda for Tool Dependencies
    • Galaxy Database Schema Migrations
    • Galaxy Reports
    • Scripts & Tricks
    • Configuration Options
    • Migrating from uWSGI to Gunicorn and FastAPI
  • Special topics
    • Galaxy FTP Uploads
    • Galaxy InteractiveTools
    • Containers for Tool Dependencies
    • Galactic Radio Telescope
    • Galaxy Training Materials Webhook
    • Job Metrics
    • Galaxy Webhooks
    • Storing secrets in the vault
    • Galaxy Performance Tracking
    • Bug Reports
    • GDPR Compliance

Developer Documentation

  • Development
    • Galaxy Tool XML File
    • API Design Guidelines
    • Build a job runner
    • Finding and improving slow Galaxy code
    • Data managers
    • Data Types
    • How Do I…
    • Writing Tests for Galaxy
    • Debugging Galaxy Tests
    • Debugging tests that run out of memory
    • Debugging Galaxy
    • Debugging Galaxy: Slurm Compute Cluster
    • Translating the Interface
    • Creating Galaxy Point Releases
  • Galaxy API
    • Quickstart
    • Documentation
  • Tool Shed API
    • API Documentation
  • Application Documentation
    • galaxy package
    • galaxy_ext package
    • galaxy_test package
    • tool_shed package

About Project

  • Project Governance
    • Procedure Documents
    • Committers
    • Release branches
    • Handling Pull Requests
    • Issue Reporting
  • Issue Management
    • Issue Reporting
    • Milestones
    • Labeling Structure
    • The Roadmap
    • Voting
    • Automation
Galaxy Project
  • Special Topics
  • View page source

Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Special Topics¶

  • Galaxy FTP Uploads
    • Install some FTP server
    • Configure Galaxy
    • Allow your FTP server to read Galaxy’s database
    • Configuring ProFTPD
    • Further security measures
    • Other Links
  • Galaxy InteractiveTools
    • How Galaxy InteractiveTools work
    • Some important benefits of using Galaxy InteractiveTools
    • Server-side configuration of Galaxy InteractiveTools
  • Containers for Tool Dependencies
    • Automatic build of Linux containers
  • Galactic Radio Telescope
    • Registration
    • About the Script
    • Data Privacy
    • Data Collection Process
    • Data Submission
  • Galaxy Training Materials Webhook
    • Click to Run
    • Proxy Setup
  • Job Metrics
    • Configuration
    • Available Plugins
    • Viewing Collected Data
    • Developing New Plugins
    • Future Plans
  • Galaxy Webhooks
    • Plugin activation
    • Entry points
    • Plugin structure
    • config.yml
    • __init__.py
    • static files
    • Plugin dependencies
    • Issues
    • tool/workflow
  • Storing secrets in the vault
    • Vault backends
    • Configuring Galaxy
    • Configuring vault_conf.yml
    • Vault configuration for Hashicorp Vault
    • Vault configuration for Custos
    • Vault configuration for database
    • Configuring user preferences to use the vault
  • Galaxy Performance Tracking
    • Gunicorn
    • API / Route Timing Statistics
  • Bug Reports
    • Email
    • JSON
    • Sentry
    • InfluxDB
    • GitHub
  • GDPR Compliance
    • Audience
    • Configuration
    • Log Redaction
    • User Deletion
    • Backups
    • Tool Shed Specific
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