Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

galaxy.tool_shed package

Subpackages

• galaxy.tool_shed.galaxy_install package
  • Subpackages
    • galaxy.tool_shed.galaxy_install.datatypes package
      • Submodules
      • galaxy.tool_shed.galaxy_install.datatypes.custom_datatype_manager module
    • galaxy.tool_shed.galaxy_install.metadata package
      • Submodules
      • galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager module
    • galaxy.tool_shed.galaxy_install.migrate package
      • Subpackages
      • Submodules
      • galaxy.tool_shed.galaxy_install.migrate.check module
      • galaxy.tool_shed.galaxy_install.migrate.common module
    • galaxy.tool_shed.galaxy_install.repository_dependencies package
      • Submodules
      • galaxy.tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager module
    • galaxy.tool_shed.galaxy_install.tool_dependencies package
      • Subpackages
      • Submodules
      • galaxy.tool_shed.galaxy_install.tool_dependencies.env_manager module
    • galaxy.tool_shed.galaxy_install.tools package
      • Submodules
      • galaxy.tool_shed.galaxy_install.tools.data_manager module
      • galaxy.tool_shed.galaxy_install.tools.tool_panel_manager module
  • Submodules
  • galaxy.tool_shed.galaxy_install.install_manager module
  • galaxy.tool_shed.galaxy_install.installed_repository_manager module
  • galaxy.tool_shed.galaxy_install.tool_migration_manager module
  • galaxy.tool_shed.galaxy_install.update_repository_manager module
• galaxy.tool_shed.metadata package
  • Submodules
  • galaxy.tool_shed.metadata.metadata_generator module
• galaxy.tool_shed.tools package
  • Submodules
  • galaxy.tool_shed.tools.data_table_manager module
  • galaxy.tool_shed.tools.tool_validator module
• galaxy.tool_shed.util package
  • Submodules
  • galaxy.tool_shed.util.basic_util module
  • galaxy.tool_shed.util.container_util module
  • galaxy.tool_shed.util.hg_util module
  • galaxy.tool_shed.util.metadata_util module
  • galaxy.tool_shed.util.repository_util module
  • galaxy.tool_shed.util.shed_util_common module
  • galaxy.tool_shed.util.tool_dependency_util module
  • galaxy.tool_shed.util.tool_util module

Submodules

galaxy.tool_shed.repository_type module

galaxy.tool_shed.tool_shed_registry module

galaxy.tool_shed.tool_shed_registry.AUTH_TUPLE

alias of galaxy.tool_shed.tool_shed_registry.AuthSetting

class galaxy.tool_shed.tool_shed_registry.Registry(config=None)

Bases: object

__init__(config=None)

Initialize self. See help(type(self)) for accurate signature.

url_auth(url)

If the tool shed is using external auth, the client to the tool shed must authenticate to that as well. This provides access to the six.moves.urllib.request.HTTPPasswordMgrWithdefaultRealm() object for the url passed in.

Following more what galaxy.demo_sequencer.controllers.common does might be more appropriate at some stage…