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galaxy.tool_shed package

Subpackages

• galaxy.tool_shed.galaxy_install package
  • Subpackages
    • galaxy.tool_shed.galaxy_install.datatypes package
      • Submodules
      • galaxy.tool_shed.galaxy_install.datatypes.custom_datatype_manager module
    • galaxy.tool_shed.galaxy_install.metadata package
      • Submodules
      • galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager module
    • galaxy.tool_shed.galaxy_install.migrate package
      • Subpackages
        • galaxy.tool_shed.galaxy_install.migrate.versions package
          • Submodules
          • galaxy.tool_shed.galaxy_install.migrate.versions.0001_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0002_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0003_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0004_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0005_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0006_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0007_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0008_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0009_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0010_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0011_tools module
          • galaxy.tool_shed.galaxy_install.migrate.versions.0012_tools module
      • Submodules
      • galaxy.tool_shed.galaxy_install.migrate.check module
      • galaxy.tool_shed.galaxy_install.migrate.common module
    • galaxy.tool_shed.galaxy_install.repository_dependencies package
      • Submodules
      • galaxy.tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager module
    • galaxy.tool_shed.galaxy_install.tool_dependencies package
      • Subpackages
        • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe package
          • Submodules
          • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.asynchronous_reader module
          • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.env_file_builder module
          • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.install_environment module
          • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.recipe_manager module
          • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.step_handler module
          • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.tag_handler module
      • Submodules
      • galaxy.tool_shed.galaxy_install.tool_dependencies.env_manager module
    • galaxy.tool_shed.galaxy_install.tools package
      • Submodules
      • galaxy.tool_shed.galaxy_install.tools.data_manager module
      • galaxy.tool_shed.galaxy_install.tools.tool_panel_manager module
  • Submodules
  • galaxy.tool_shed.galaxy_install.install_manager module
  • galaxy.tool_shed.galaxy_install.installed_repository_manager module
  • galaxy.tool_shed.galaxy_install.tool_migration_manager module
  • galaxy.tool_shed.galaxy_install.update_repository_manager module
• galaxy.tool_shed.metadata package
  • Submodules
  • galaxy.tool_shed.metadata.metadata_generator module
• galaxy.tool_shed.tools package
  • Submodules
  • galaxy.tool_shed.tools.data_table_manager module
  • galaxy.tool_shed.tools.tool_validator module
• galaxy.tool_shed.util package
  • Submodules
  • galaxy.tool_shed.util.basic_util module
  • galaxy.tool_shed.util.container_util module
  • galaxy.tool_shed.util.hg_util module
  • galaxy.tool_shed.util.metadata_util module
  • galaxy.tool_shed.util.repository_util module
  • galaxy.tool_shed.util.shed_util_common module
  • galaxy.tool_shed.util.tool_dependency_util module
  • galaxy.tool_shed.util.tool_util module

Submodules

galaxy.tool_shed.repository_type module

galaxy.tool_shed.tool_shed_registry module

galaxy.tool_shed.tool_shed_registry.AUTH_TUPLE

alias of galaxy.tool_shed.tool_shed_registry.AuthSetting

class galaxy.tool_shed.tool_shed_registry.Registry(config=None)

Bases: object

__init__(config=None)

url_auth(url)

If the tool shed is using external auth, the client to the tool shed must authenticate to that as well. This provides access to the six.moves.urllib.request.HTTPPasswordMgrWithdefaultRealm() object for the url passed in.

Following more what galaxy.demo_sequencer.controllers.common does might be more appropriate at some stage…