Warning

This document is for an in-development version of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

galaxy.tool_shed package

Subpackages

• galaxy.tool_shed.galaxy_install package
  • Subpackages
    • galaxy.tool_shed.galaxy_install.datatypes package
      • Submodules
      • galaxy.tool_shed.galaxy_install.datatypes.custom_datatype_manager module
    • galaxy.tool_shed.galaxy_install.metadata package
      • Submodules
      • galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager module
    • galaxy.tool_shed.galaxy_install.migrate package
      • Subpackages
      • Submodules
      • galaxy.tool_shed.galaxy_install.migrate.check module
      • galaxy.tool_shed.galaxy_install.migrate.common module
    • galaxy.tool_shed.galaxy_install.repository_dependencies package
      • Submodules
      • galaxy.tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager module
    • galaxy.tool_shed.galaxy_install.tool_dependencies package
      • Subpackages
      • Submodules
      • galaxy.tool_shed.galaxy_install.tool_dependencies.env_manager module
    • galaxy.tool_shed.galaxy_install.tools package
      • Submodules
      • galaxy.tool_shed.galaxy_install.tools.data_manager module
      • galaxy.tool_shed.galaxy_install.tools.tool_panel_manager module
  • Submodules
  • galaxy.tool_shed.galaxy_install.install_manager module
  • galaxy.tool_shed.galaxy_install.installed_repository_manager module
  • galaxy.tool_shed.galaxy_install.tool_migration_manager module
  • galaxy.tool_shed.galaxy_install.update_repository_manager module
• galaxy.tool_shed.metadata package
  • Submodules
  • galaxy.tool_shed.metadata.metadata_generator module
• galaxy.tool_shed.tools package
  • Submodules
  • galaxy.tool_shed.tools.data_table_manager module
  • galaxy.tool_shed.tools.tool_validator module
• galaxy.tool_shed.util package
  • Submodules
  • galaxy.tool_shed.util.basic_util module
  • galaxy.tool_shed.util.container_util module
  • galaxy.tool_shed.util.hg_util module
  • galaxy.tool_shed.util.metadata_util module
  • galaxy.tool_shed.util.repository_util module
  • galaxy.tool_shed.util.shed_util_common module
  • galaxy.tool_shed.util.tool_dependency_util module
  • galaxy.tool_shed.util.tool_util module

Submodules

galaxy.tool_shed.repository_type module

galaxy.tool_shed.tool_shed_registry module

class galaxy.tool_shed.tool_shed_registry.AUTH_TUPLE(username, password)

Bases: tuple

property username

Alias for field number 0

property password

Alias for field number 1

class galaxy.tool_shed.tool_shed_registry.Registry(config=None)

Bases: object

__init__(config=None)

url_auth(url)

If the tool shed is using external auth, the client to the tool shed must authenticate to that as well. This provides access to the six.moves.urllib.request.HTTPPasswordMgrWithdefaultRealm() object for the url passed in.

Following more what galaxy.demo_sequencer.controllers.common does might be more appropriate at some stage…