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galaxy.app_unittest_utils package

Submodules

galaxy.app_unittest_utils.galaxy_mock module

Mock infrastructure for testing ModelManagers.

galaxy.app_unittest_utils.galaxy_mock.buildMockEnviron(**kwargs)

class galaxy.app_unittest_utils.galaxy_mock.MockApp(config=None, **kwargs)

Bases: Container, GalaxyDataTestApp

config: MockAppConfig

amqp_type: str

job_search: Optional[JobSearch] = None

toolbox: ToolBox

tool_cache: ToolCache

install_model: ModelMapping

watchers: ConfigWatchers

dataset_collection_manager: DatasetCollectionManager

hda_manager: HDAManager

workflow_manager: WorkflowsManager

history_manager: HistoryManager

job_metrics: JobMetrics

stop: bool

__init__(config=None, **kwargs) → None

wait_for_toolbox_reload(toolbox)

reindex_tool_search() → None

class galaxy.app_unittest_utils.galaxy_mock.MockLock

Bases: object

class galaxy.app_unittest_utils.galaxy_mock.MockAppConfig(**kwargs)

Bases: GalaxyDataTestConfig, CommonConfigurationMixin

class MockSchema(**kwds)

Bases: Bunch

defaults = {'tool_dependency_dir': 'dependencies'}

__init__(**kwargs)

property config_dict

security: IdEncodingHelper

database_connection: str

root: str

data_dir: str

class galaxy.app_unittest_utils.galaxy_mock.MockWebapp(security: IdEncodingHelper, **kwargs)

Bases: object

__init__(security: IdEncodingHelper, **kwargs)

class galaxy.app_unittest_utils.galaxy_mock.MockTrans(app=None, user=None, history=None, **kwargs)

Bases: object

__init__(app=None, user=None, history=None, **kwargs)

check_csrf_token(payload)

handle_user_login(user)

log_event(message)

get_user()

set_user(user)

Set the current user.

property user

get_history(**kwargs)

set_history(history)

fill_template(filename, template_lookup=None, **kwargs)

class galaxy.app_unittest_utils.galaxy_mock.MockVisualizationsRegistry

Bases: object

BUILT_IN_VISUALIZATIONS = ['trackster']

get_visualizations(trans, target)

class galaxy.app_unittest_utils.galaxy_mock.MockDir(structure_dict, where=None)

Bases: object

__init__(structure_dict, where=None)

create_root(structure_dict, where=None)

create_structure(current_path, structure_dict)

create_file(path, contents)

remove()

class galaxy.app_unittest_utils.galaxy_mock.MockTemplateHelpers

Bases: object

js()

css()

galaxy.app_unittest_utils.tools_support module

Module contains test fixtures meant to aide in the testing of jobs and tool evaluation. Such extensive “fixtures” are something of an anti-pattern so use of this should be limitted to tests of very ‘extensive’ classes.

class galaxy.app_unittest_utils.tools_support.UsesApp

Bases: object

setup_app()

tear_down_app()