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tool_shed.test package
Tool shed functional Tests
Subpackages
- tool_shed.test.base package
- Submodules
- tool_shed.test.base.common module
- tool_shed.test.base.test_db_util module
sa_session()install_session()flush()get_all_repositories()get_all_installed_repositories()get_installed_repository_by_id()get_installed_repository_by_name_owner()get_role()get_repository_role_association()get_repository_by_id()get_user()refresh()ga_refresh()get_repository_by_name_and_owner()get_repository_metadata_by_repository_id_changeset_revision()
- tool_shed.test.base.twilltestcase module
ToolShedInstallationClientToolShedInstallationClient.check_galaxy_repository_tool_panel_section()ToolShedInstallationClient.setup()ToolShedInstallationClient.deactivate_repository()ToolShedInstallationClient.display_installed_jobs_list_page()ToolShedInstallationClient.installed_repository_extended_info()ToolShedInstallationClient.install_repository()ToolShedInstallationClient.reactivate_repository()ToolShedInstallationClient.reset_metadata_on_installed_repositories()ToolShedInstallationClient.reset_installed_repository_metadata()ToolShedInstallationClient.uninstall_repository()ToolShedInstallationClient.update_installed_repository()ToolShedInstallationClient.tool_data_pathToolShedInstallationClient.shed_tool_data_table_confToolShedInstallationClient.get_tool_names()ToolShedInstallationClient.get_installed_repository_by_name_owner()ToolShedInstallationClient.get_installed_repositories_by_name_owner()ToolShedInstallationClient.get_installed_repository_for()ToolShedInstallationClient.get_all_installed_repositories()ToolShedInstallationClient.refresh_tool_shed_repository()
GalaxyInteractorToolShedInstallationClientGalaxyInteractorToolShedInstallationClient.__init__()GalaxyInteractorToolShedInstallationClient.setup()GalaxyInteractorToolShedInstallationClient.check_galaxy_repository_tool_panel_section()GalaxyInteractorToolShedInstallationClient.deactivate_repository()GalaxyInteractorToolShedInstallationClient.display_installed_jobs_list_page()GalaxyInteractorToolShedInstallationClient.installed_repository_extended_info()GalaxyInteractorToolShedInstallationClient.install_repository()GalaxyInteractorToolShedInstallationClient.reactivate_repository()GalaxyInteractorToolShedInstallationClient.reset_metadata_on_installed_repositories()GalaxyInteractorToolShedInstallationClient.uninstall_repository()GalaxyInteractorToolShedInstallationClient.update_installed_repository()GalaxyInteractorToolShedInstallationClient.reset_installed_repository_metadata()GalaxyInteractorToolShedInstallationClient.tool_data_pathGalaxyInteractorToolShedInstallationClient.shed_tool_data_table_confGalaxyInteractorToolShedInstallationClient.get_tool_names()GalaxyInteractorToolShedInstallationClient.get_installed_repository_by_name_owner()GalaxyInteractorToolShedInstallationClient.get_installed_repositories_by_name_owner()GalaxyInteractorToolShedInstallationClient.get_installed_repository_for()GalaxyInteractorToolShedInstallationClient.get_all_installed_repositories()GalaxyInteractorToolShedInstallationClient.refresh_tool_shed_repository()
StandaloneToolShedInstallationClientStandaloneToolShedInstallationClient.__init__()StandaloneToolShedInstallationClient.setup()StandaloneToolShedInstallationClient.check_galaxy_repository_tool_panel_section()StandaloneToolShedInstallationClient.deactivate_repository()StandaloneToolShedInstallationClient.display_installed_jobs_list_page()StandaloneToolShedInstallationClient.installed_repository_extended_info()StandaloneToolShedInstallationClient.install_repository()StandaloneToolShedInstallationClient.reactivate_repository()StandaloneToolShedInstallationClient.reset_metadata_on_installed_repositories()StandaloneToolShedInstallationClient.reset_installed_repository_metadata()StandaloneToolShedInstallationClient.uninstall_repository()StandaloneToolShedInstallationClient.update_installed_repository()StandaloneToolShedInstallationClient.get_installed_repository_by_name_owner()StandaloneToolShedInstallationClient.get_installed_repositories_by_name_owner()StandaloneToolShedInstallationClient.get_installed_repository_for()StandaloneToolShedInstallationClient.get_all_installed_repositories()StandaloneToolShedInstallationClient.refresh_tool_shed_repository()StandaloneToolShedInstallationClient.shed_tool_data_table_confStandaloneToolShedInstallationClient.tool_data_pathStandaloneToolShedInstallationClient.get_tool_names()
ShedTwillTestCaseShedTwillTestCase.requires_galaxyShedTwillTestCase.setUp()ShedTwillTestCase.inject_shed_browser()ShedTwillTestCase.check_for_strings()ShedTwillTestCase.check_page_for_string()ShedTwillTestCase.check_string_not_in_page()ShedTwillTestCase.invalid_tools_labelsShedTwillTestCase.create()ShedTwillTestCase.last_page()ShedTwillTestCase.user_api_interactor()ShedTwillTestCase.user_populator()ShedTwillTestCase.login()ShedTwillTestCase.is_v2ShedTwillTestCase.logout()ShedTwillTestCase.submit_form()ShedTwillTestCase.join_url_and_params()ShedTwillTestCase.visit_url()ShedTwillTestCase.write_temp_file()ShedTwillTestCase.assign_admin_role()ShedTwillTestCase.browse_category()ShedTwillTestCase.browse_repository()ShedTwillTestCase.browse_repository_dependencies()ShedTwillTestCase.browse_tool_shed()ShedTwillTestCase.browse_tool_dependencies()ShedTwillTestCase.browse_tools()ShedTwillTestCase.check_count_of_metadata_revisions_associated_with_repository()ShedTwillTestCase.check_for_valid_tools()ShedTwillTestCase.check_galaxy_repository_db_status()ShedTwillTestCase.check_repository_changelog()ShedTwillTestCase.check_repository_dependency()ShedTwillTestCase.check_repository_metadata()ShedTwillTestCase.check_repository_tools_for_changeset_revision()ShedTwillTestCase.check_repository_invalid_tools_for_changeset_revision()ShedTwillTestCase.check_string_count_in_page()ShedTwillTestCase.check_galaxy_repository_tool_panel_section()ShedTwillTestCase.clone_repository()ShedTwillTestCase.commit_and_push()ShedTwillTestCase.create_category()ShedTwillTestCase.create_repository_dependency()ShedTwillTestCase.deactivate_repository()ShedTwillTestCase.cloned_repo()ShedTwillTestCase.setup_freebayes_0010_repo()ShedTwillTestCase.add_file_to_repository()ShedTwillTestCase.add_tar_to_repository()ShedTwillTestCase.commit_tar_to_repository()ShedTwillTestCase.delete_files_from_repository()ShedTwillTestCase.delete_repository()ShedTwillTestCase.display_installed_jobs_list_page()ShedTwillTestCase.display_installed_repository_manage_json()ShedTwillTestCase.display_manage_repository_page()ShedTwillTestCase.display_repository_clone_page()ShedTwillTestCase.display_repository_file_contents()ShedTwillTestCase.edit_repository_categories()ShedTwillTestCase.edit_repository_information()ShedTwillTestCase.enable_email_alerts()ShedTwillTestCase.escape_html()ShedTwillTestCase.expect_repo_created_strings()ShedTwillTestCase.fetch_repository_metadata()ShedTwillTestCase.generate_complex_dependency_xml()ShedTwillTestCase.generate_simple_dependency_xml()ShedTwillTestCase.generate_temp_path()ShedTwillTestCase.get_all_installed_repositories()ShedTwillTestCase.get_filename()ShedTwillTestCase.get_hg_repo()ShedTwillTestCase.get_repositories_category_api()ShedTwillTestCase.get_or_create_repository()ShedTwillTestCase.get_repo_path()ShedTwillTestCase.get_repository_changelog_tuples()ShedTwillTestCase.get_repository_file_list()ShedTwillTestCase.get_repository_metadata()ShedTwillTestCase.get_repository_metadata_for_db_object()ShedTwillTestCase.get_repository_metadata_by_changeset_revision()ShedTwillTestCase.get_repository_metadata_revisions()ShedTwillTestCase.get_repository_tip()ShedTwillTestCase.get_repository_first_revision()ShedTwillTestCase.get_tools_from_repository_metadata()ShedTwillTestCase.grant_role_to_user()ShedTwillTestCase.grant_write_access()ShedTwillTestCase.load_citable_url()ShedTwillTestCase.load_changeset_in_tool_shed()ShedTwillTestCase.load_checkable_revisions()ShedTwillTestCase.load_display_tool_page()ShedTwillTestCase.load_invalid_tool_page()ShedTwillTestCase.preview_repository_in_tool_shed()ShedTwillTestCase.reactivate_repository()ShedTwillTestCase.reinstall_repository_api()ShedTwillTestCase.repository_is_new()ShedTwillTestCase.reset_metadata_on_selected_repositories()ShedTwillTestCase.reset_metadata_on_installed_repositories()ShedTwillTestCase.reset_repository_metadata()ShedTwillTestCase.revoke_write_access()ShedTwillTestCase.search_for_valid_tools()ShedTwillTestCase.set_repository_deprecated()ShedTwillTestCase.set_repository_malicious()ShedTwillTestCase.tip_has_metadata()ShedTwillTestCase.undelete_repository()ShedTwillTestCase.update_installed_repository()ShedTwillTestCase.verify_installed_repositories()ShedTwillTestCase.verify_installed_repository_metadata_unchanged()ShedTwillTestCase.verify_installed_repository_no_tool_panel_section()ShedTwillTestCase.shed_tool_data_table_confShedTwillTestCase.tool_data_pathShedTwillTestCase.verify_installed_repository_data_table_entries()ShedTwillTestCase.verify_unchanged_repository_metadata()ShedTwillTestCase.pytestmark
get_installed_repository()
- tool_shed.test.functional package
- Submodules
- tool_shed.test.functional.test_0000_basic_repository_features module
TestBasicRepositoryFeaturesTestBasicRepositoryFeatures.test_0000_initiate_users()TestBasicRepositoryFeatures.test_0005_create_repository_without_categories()TestBasicRepositoryFeatures.test_0010_create_categories()TestBasicRepositoryFeatures.test_0015_create_repository()TestBasicRepositoryFeatures.test_0020_edit_repository()TestBasicRepositoryFeatures.test_0025_change_repository_category()TestBasicRepositoryFeatures.test_0030_grant_write_access()TestBasicRepositoryFeatures.test_0035_upload_filtering_1_1_0()TestBasicRepositoryFeatures.test_0040_verify_repository()TestBasicRepositoryFeatures.test_0045_alter_repository_states()TestBasicRepositoryFeatures.test_0050_display_repository_tip_file()TestBasicRepositoryFeatures.test_0055_upload_filtering_txt_file()TestBasicRepositoryFeatures.test_0060_upload_filtering_test_data()TestBasicRepositoryFeatures.test_0065_upload_filtering_2_2_0()TestBasicRepositoryFeatures.test_0070_verify_filtering_repository()TestBasicRepositoryFeatures.test_0075_upload_readme_txt_file()TestBasicRepositoryFeatures.test_0080_delete_readme_txt_file()TestBasicRepositoryFeatures.test_0085_search_for_valid_filter_tool()TestBasicRepositoryFeatures.test_0090_verify_repository_metadata()TestBasicRepositoryFeatures.test_0095_verify_reserved_repository_name_handling()TestBasicRepositoryFeatures.test_0100_verify_reserved_username_handling()TestBasicRepositoryFeatures.test_0105_contact_repository_owner()TestBasicRepositoryFeatures.test_0110_delete_filtering_repository()TestBasicRepositoryFeatures.test_0115_undelete_filtering_repository()TestBasicRepositoryFeatures.test_0120_enable_email_notifications()TestBasicRepositoryFeatures.test_0125_upload_new_readme_file()TestBasicRepositoryFeatures.test_0130_verify_handling_of_invalid_characters()TestBasicRepositoryFeatures.test_0135_api_get_repositories_in_category()TestBasicRepositoryFeatures.test_0140_view_invalid_changeset()
- tool_shed.test.functional.test_0010_repository_with_tool_dependencies module
repository_long_descriptionTestFreebayesRepositoryTestFreebayesRepository.test_0000_create_or_login_admin_user()TestFreebayesRepository.test_0005_create_category()TestFreebayesRepository.test_0010_create_freebayes_repository_and_upload_tool_xml()TestFreebayesRepository.test_0015_upload_missing_tool_data_table_conf_file()TestFreebayesRepository.test_0020_upload_missing_sample_loc_file()TestFreebayesRepository.test_0025_upload_malformed_tool_dependency_xml()TestFreebayesRepository.test_0030_upload_invalid_tool_dependency_xml()TestFreebayesRepository.test_0035_upload_valid_tool_dependency_xml()TestFreebayesRepository.test_0040_verify_tool_dependencies()
- tool_shed.test.functional.test_0020_basic_repository_dependencies module
TestBasicRepositoryDependenciesTestBasicRepositoryDependencies.test_0000_initiate_users()TestBasicRepositoryDependencies.test_0005_create_category()TestBasicRepositoryDependencies.test_0010_create_column_maker_repository()TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()TestBasicRepositoryDependencies.test_0025_generate_and_upload_repository_dependencies_xml()TestBasicRepositoryDependencies.test_0030_verify_emboss_5_dependencies()TestBasicRepositoryDependencies.test_0040_verify_repository_metadata()
- tool_shed.test.functional.test_0030_repository_dependency_revisions module
TestRepositoryDependencyRevisionsTestRepositoryDependencyRevisions.test_0000_initiate_users()TestRepositoryDependencyRevisions.test_0005_create_category()TestRepositoryDependencyRevisions.test_0010_create_emboss_5_repository()TestRepositoryDependencyRevisions.test_0015_create_emboss_6_repository()TestRepositoryDependencyRevisions.test_0020_create_dependent_repository()TestRepositoryDependencyRevisions.test_0025_create_emboss_repository()TestRepositoryDependencyRevisions.test_0030_generate_repository_dependencies_for_emboss_5()TestRepositoryDependencyRevisions.test_0035_generate_repository_dependencies_for_emboss_6()TestRepositoryDependencyRevisions.test_0040_generate_repository_dependency_on_emboss_5()TestRepositoryDependencyRevisions.test_0045_generate_repository_dependency_on_emboss_6()TestRepositoryDependencyRevisions.test_0050_verify_repository_dependency_revisions()TestRepositoryDependencyRevisions.test_0055_verify_repository_metadata()
- tool_shed.test.functional.test_0040_repository_circular_dependencies module
TestRepositoryCircularDependenciesTestRepositoryCircularDependencies.test_0000_initiate_users()TestRepositoryCircularDependencies.test_0005_create_category()TestRepositoryCircularDependencies.test_0010_create_freebayes_repository()TestRepositoryCircularDependencies.test_0015_create_filtering_repository()TestRepositoryCircularDependencies.test_0020_create_dependency_on_freebayes()TestRepositoryCircularDependencies.test_0025_create_dependency_on_filtering()TestRepositoryCircularDependencies.test_0030_verify_repository_dependencies()TestRepositoryCircularDependencies.test_0035_verify_repository_metadata()TestRepositoryCircularDependencies.test_0040_verify_tool_dependencies()
- tool_shed.test.functional.test_0050_circular_dependencies_4_levels module
TestRepositoryCircularDependenciesToNLevelsTestRepositoryCircularDependenciesToNLevels.test_0000_initiate_users()TestRepositoryCircularDependenciesToNLevels.test_0005_create_convert_repository()TestRepositoryCircularDependenciesToNLevels.test_0010_create_column_repository()TestRepositoryCircularDependenciesToNLevels.test_0015_create_emboss_datatypes_repository()TestRepositoryCircularDependenciesToNLevels.test_0020_create_emboss_repository()TestRepositoryCircularDependenciesToNLevels.test_0025_create_filtering_repository()TestRepositoryCircularDependenciesToNLevels.test_0030_create_freebayes_repository()TestRepositoryCircularDependenciesToNLevels.test_0035_create_bismark_repository()TestRepositoryCircularDependenciesToNLevels.test_0040_create_and_upload_dependency_definitions()TestRepositoryCircularDependenciesToNLevels.test_0045_verify_repository_dependencies()TestRepositoryCircularDependenciesToNLevels.test_0050_verify_tool_dependencies()TestRepositoryCircularDependenciesToNLevels.test_0055_verify_repository_metadata()
- tool_shed.test.functional.test_0070_invalid_tool module
- tool_shed.test.functional.test_0080_advanced_circular_dependencies module
TestRepositoryCircularDependenciesTestRepositoryCircularDependencies.test_0000_initiate_users()TestRepositoryCircularDependencies.test_0005_create_column_repository()TestRepositoryCircularDependencies.test_0005_create_convert_repository()TestRepositoryCircularDependencies.test_0020_create_repository_dependencies()TestRepositoryCircularDependencies.test_0025_create_dependency_on_filtering()TestRepositoryCircularDependencies.test_0030_verify_repository_dependencies()TestRepositoryCircularDependencies.test_0035_verify_repository_metadata()
- tool_shed.test.functional.test_0090_tool_search module
TestRepositoryCircularDependenciesAgainTestRepositoryCircularDependenciesAgain.test_0000_initiate_users()TestRepositoryCircularDependenciesAgain.test_0005_create_bwa_base_repository()TestRepositoryCircularDependenciesAgain.test_0010_create_bwa_color_repository()TestRepositoryCircularDependenciesAgain.test_0020_create_emboss_repository()TestRepositoryCircularDependenciesAgain.test_0025_create_filtering_repository()TestRepositoryCircularDependenciesAgain.test_0030_create_freebayes_repository()TestRepositoryCircularDependenciesAgain.test_0035_create_and_upload_dependency_definitions()TestRepositoryCircularDependenciesAgain.test_0040_verify_repository_dependencies()
- tool_shed.test.functional.test_0100_complex_repository_dependencies module
TestComplexRepositoryDependenciesTestComplexRepositoryDependencies.test_0000_initiate_users()TestComplexRepositoryDependencies.test_0005_create_bwa_package_repository()TestComplexRepositoryDependencies.test_0010_create_bwa_base_repository()TestComplexRepositoryDependencies.test_0015_generate_complex_repository_dependency_invalid_shed_url()TestComplexRepositoryDependencies.test_0020_generate_complex_repository_dependency_invalid_repository_name()TestComplexRepositoryDependencies.test_0025_generate_complex_repository_dependency_invalid_owner_name()TestComplexRepositoryDependencies.test_0030_generate_complex_repository_dependency_invalid_changeset_revision()TestComplexRepositoryDependencies.test_0035_generate_complex_repository_dependency()TestComplexRepositoryDependencies.test_0040_generate_tool_dependency()
- tool_shed.test.functional.test_0110_invalid_simple_repository_dependencies module
TestBasicRepositoryDependenciesTestBasicRepositoryDependencies.test_0000_initiate_users()TestBasicRepositoryDependencies.test_0005_create_category()TestBasicRepositoryDependencies.test_0010_create_emboss_datatypes_repository_and_upload_tarball()TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()TestBasicRepositoryDependencies.test_0025_generate_repository_dependency_with_invalid_url()TestBasicRepositoryDependencies.test_0030_generate_repository_dependency_with_invalid_name()TestBasicRepositoryDependencies.test_0035_generate_repository_dependency_with_invalid_owner()TestBasicRepositoryDependencies.test_0040_generate_repository_dependency_with_invalid_changeset_revision()
- tool_shed.test.functional.test_0120_simple_repository_dependency_multiple_owners module
tool_repository_long_descriptionTestRepositoryMultipleOwnersTestRepositoryMultipleOwners.test_0000_initiate_users()TestRepositoryMultipleOwners.test_0005_create_datatypes_repository()TestRepositoryMultipleOwners.test_0010_verify_datatypes_repository()TestRepositoryMultipleOwners.test_0015_create_tool_repository()TestRepositoryMultipleOwners.test_0020_verify_tool_repository()TestRepositoryMultipleOwners.test_0025_create_repository_dependency()TestRepositoryMultipleOwners.test_0040_verify_repository_dependency()
- tool_shed.test.functional.test_0130_datatype_converters module
- tool_shed.test.functional.test_0140_tool_help_images module
- tool_shed.test.functional.test_0150_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_repository_dependency()TestSimplePriorInstallation.test_0020_verify_repository_dependency()
- tool_shed.test.functional.test_0160_circular_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_filtering_repository()TestSimplePriorInstallation.test_0020_create_repository_dependency()TestSimplePriorInstallation.test_0025_verify_repository_dependency()
- tool_shed.test.functional.test_0170_complex_prior_installation_required module
category_descriptionTestComplexPriorInstallationTestComplexPriorInstallation.test_0000_initiate_users()TestComplexPriorInstallation.test_0005_create_matplotlib_repository()TestComplexPriorInstallation.test_0010_create_numpy_repository()TestComplexPriorInstallation.test_0015_create_complex_repository_dependency()TestComplexPriorInstallation.test_0020_verify_generated_dependency()
- tool_shed.test.functional.test_0300_reset_all_metadata module
TestResetAllRepositoryMetadataTestResetAllRepositoryMetadata.test_0000_initiate_users()TestResetAllRepositoryMetadata.test_0005_create_filtering_repository()TestResetAllRepositoryMetadata.test_0010_create_freebayes_repository()TestResetAllRepositoryMetadata.test_0015_create_datatypes_0020_repository()TestResetAllRepositoryMetadata.test_0020_create_emboss_0020_repository()TestResetAllRepositoryMetadata.test_0025_create_emboss_datatypes_0030_repository()TestResetAllRepositoryMetadata.test_0030_create_emboss_5_repository()TestResetAllRepositoryMetadata.test_0035_create_emboss_6_repository()TestResetAllRepositoryMetadata.test_0040_create_emboss_0030_repository()TestResetAllRepositoryMetadata.test_0045_create_repository_dependencies_for_0030()TestResetAllRepositoryMetadata.test_0050_create_freebayes_repository()TestResetAllRepositoryMetadata.test_0055_create_filtering_repository()TestResetAllRepositoryMetadata.test_0060_create_dependency_structure()TestResetAllRepositoryMetadata.test_0065_create_convert_repository()TestResetAllRepositoryMetadata.test_0070_create_column_repository()TestResetAllRepositoryMetadata.test_0075_create_emboss_datatypes_repository()TestResetAllRepositoryMetadata.test_0080_create_emboss_repository()TestResetAllRepositoryMetadata.test_0085_create_filtering_repository()TestResetAllRepositoryMetadata.test_0090_create_freebayes_repository()TestResetAllRepositoryMetadata.test_0095_create_bismark_repository()TestResetAllRepositoryMetadata.test_0100_create_and_upload_dependency_definitions()TestResetAllRepositoryMetadata.test_0110_reset_metadata_on_all_repositories()
- tool_shed.test.functional.test_0310_hg_api_features module
- tool_shed.test.functional.test_0400_repository_component_reviews module
- tool_shed.test.functional.test_0410_repository_component_review_access_control module
- tool_shed.test.functional.test_0420_citable_urls_for_repositories module
first_changeset_hashTestRepositoryCitableURLsTestRepositoryCitableURLs.test_0000_initiate_users()TestRepositoryCitableURLs.test_0005_create_repository()TestRepositoryCitableURLs.test_0010_upload_new_file_to_repository()TestRepositoryCitableURLs.test_0015_load_user_view_page()TestRepositoryCitableURLs.test_0020_load_repository_view_page()TestRepositoryCitableURLs.test_0025_load_view_page_for_previous_revision()TestRepositoryCitableURLs.test_0030_load_sharable_url_with_invalid_changeset_revision()TestRepositoryCitableURLs.test_0035_load_sharable_url_with_invalid_repository_name()TestRepositoryCitableURLs.test_0040_load_sharable_url_with_invalid_owner()
- tool_shed.test.functional.test_0430_browse_utilities module
freebayes_repository_long_descriptionTestToolShedBrowseUtilitiesTestToolShedBrowseUtilities.test_0000_initiate_users()TestToolShedBrowseUtilities.test_0010_create_emboss_repository()TestToolShedBrowseUtilities.test_0020_create_tool_dependency_repository()TestToolShedBrowseUtilities.test_0030_browse_tools()TestToolShedBrowseUtilities.test_0040_browse_tool_dependencies()
- tool_shed.test.functional.test_0440_deleting_dependency_definitions module
bwa_tool_dependency_repository_long_descriptionTestDeletedDependenciesTestDeletedDependencies.test_0000_initiate_users()TestDeletedDependencies.test_0005_create_column_maker_repository()TestDeletedDependencies.test_0010_create_convert_chars_repository()TestDeletedDependencies.test_0015_create_dependency_on_convert_chars()TestDeletedDependencies.test_0020_verify_dependency_metadata()TestDeletedDependencies.test_0025_delete_repository_dependency()TestDeletedDependencies.test_0030_create_bwa_package_repository()TestDeletedDependencies.test_0035_create_bwa_base_repository()TestDeletedDependencies.test_0040_create_dependency_on_bwa_package_repository()TestDeletedDependencies.test_0045_verify_dependency_metadata()TestDeletedDependencies.test_0050_delete_complex_repository_dependency()TestDeletedDependencies.test_0055_create_bwa_tool_dependency_repository()TestDeletedDependencies.test_0060_delete_bwa_tool_dependency_definition()TestDeletedDependencies.test_0065_reupload_bwa_tool_dependency_definition()
- tool_shed.test.functional.test_0460_upload_to_repository module
bwa_repository_long_descriptionTestAutomaticDependencyRevisionTestAutomaticDependencyRevision.test_0000_initiate_users()TestAutomaticDependencyRevision.test_0005_create_datatypes_repository()TestAutomaticDependencyRevision.test_0010_create_bwa_package_repository()TestAutomaticDependencyRevision.test_0015_create_tool_dependency_repositories()TestAutomaticDependencyRevision.test_0020_populate_complex_dependency_test_1_0460()TestAutomaticDependencyRevision.test_0025_populate_complex_dependency_test_2_0460()TestAutomaticDependencyRevision.test_0030_populate_complex_dependency_test_3_0460()TestAutomaticDependencyRevision.test_0035_create_repositories_for_url_upload()TestAutomaticDependencyRevision.test_0050_create_repositories_for_simple_dependencies()TestAutomaticDependencyRevision.test_0055_populate_repository_dependency_test_1_0460()TestAutomaticDependencyRevision.test_0060_populate_repository_dependency_test_2_0460()TestAutomaticDependencyRevision.test_0065_populate_repository_dependency_test_3_0460()TestAutomaticDependencyRevision.test_0070_create_repositories_for_url_upload()
- tool_shed.test.functional.test_0470_tool_dependency_repository_type module
emboss_repository_long_descriptionTestEnvironmentInheritanceTestEnvironmentInheritance.test_0000_initiate_users_and_category()TestEnvironmentInheritance.test_0005_create_libx11_repository()TestEnvironmentInheritance.test_0010_create_emboss_5_0_0_repository()TestEnvironmentInheritance.test_0015_create_emboss_5_repository()TestEnvironmentInheritance.test_0020_upload_updated_tool_dependency_to_package_x11()TestEnvironmentInheritance.test_0025_upload_updated_tool_dependency_to_package_emboss()TestEnvironmentInheritance.test_0030_upload_updated_tool_dependency_to_emboss_5_repository()TestEnvironmentInheritance.test_0035_modify_package_x11_repository_type()TestEnvironmentInheritance.test_0040_modify_package_emboss_repository_type()TestEnvironmentInheritance.test_0045_reset_repository_metadata()TestEnvironmentInheritance.test_0050_reset_emboss_5_metadata()
- tool_shed.test.functional.test_0480_tool_dependency_xml_verification module
- tool_shed.test.functional.test_0530_repository_admin_feature module
category_descriptionTestRepositoryAdminRoleTestRepositoryAdminRole.test_0000_initiate_users()TestRepositoryAdminRole.test_0005_create_filtering_repository()TestRepositoryAdminRole.test_0010_verify_repository_admin_role_exists()TestRepositoryAdminRole.test_0015_verify_repository_role_association()TestRepositoryAdminRole.test_0020_rename_repository()TestRepositoryAdminRole.test_0030_verify_access_denied()TestRepositoryAdminRole.test_0035_grant_admin_role()TestRepositoryAdminRole.test_0040_rename_repository_as_repository_admin()
- tool_shed.test.functional.test_0540_get_all_metadata_from_api module
- tool_shed.test.functional.test_0550_metadata_updated_dependencies module
category_descriptionTestGetUpdatedMetadataTestGetUpdatedMetadata.test_0000_initiate_users()TestGetUpdatedMetadata.test_0005_freebayes_repository()TestGetUpdatedMetadata.test_0010_create_samtools_repository()TestGetUpdatedMetadata.test_0015_create_filtering_repository()TestGetUpdatedMetadata.test_0020_check_repository_dependency()TestGetUpdatedMetadata.test_0025_update_dependent_repositories()
- tool_shed.test.functional.test_1000_install_basic_repository module
TestBasicToolShedFeaturesTestBasicToolShedFeatures.requires_galaxyTestBasicToolShedFeatures.test_0000_initiate_users()TestBasicToolShedFeatures.test_0005_ensure_repositories_and_categories_exist()TestBasicToolShedFeatures.test_0010_browse_tool_sheds()TestBasicToolShedFeatures.test_0015_browse_test_0000_category()TestBasicToolShedFeatures.test_0020_preview_filtering_repository()TestBasicToolShedFeatures.test_0025_install_filtering_repository()TestBasicToolShedFeatures.test_0030_install_filtering_repository_again()TestBasicToolShedFeatures.test_0035_verify_installed_repository_metadata()
- tool_shed.test.functional.test_1010_install_repository_with_tool_dependencies module
TestToolWithToolDependenciesTestToolWithToolDependencies.requires_galaxyTestToolWithToolDependencies.test_0000_initiate_users()TestToolWithToolDependencies.test_0005_ensure_repositories_and_categories_exist()TestToolWithToolDependencies.test_0010_browse_tool_shed()TestToolWithToolDependencies.test_0015_install_freebayes_repository()TestToolWithToolDependencies.test_0020_verify_installed_repository_metadata()TestToolWithToolDependencies.test_0025_verify_sample_files()
- tool_shed.test.functional.test_1020_install_repository_with_repository_dependencies module
TestToolWithRepositoryDependenciesTestToolWithRepositoryDependencies.requires_galaxyTestToolWithRepositoryDependencies.test_0000_initiate_users()TestToolWithRepositoryDependencies.test_0005_ensure_repositories_and_categories_exist()TestToolWithRepositoryDependencies.test_0010_browse_tool_shed()TestToolWithRepositoryDependencies.test_0015_install_emboss_repository()TestToolWithRepositoryDependencies.test_0020_verify_installed_repository_metadata()TestToolWithRepositoryDependencies.test_0025_deactivate_datatypes_repository()TestToolWithRepositoryDependencies.test_0030_reactivate_datatypes_repository()
- tool_shed.test.functional.test_1030_install_repository_with_dependency_revisions module
TestRepositoryWithDependencyRevisionsTestRepositoryWithDependencyRevisions.requires_galaxyTestRepositoryWithDependencyRevisions.test_0000_initiate_users()TestRepositoryWithDependencyRevisions.test_0005_ensure_repositories_and_categories_exist()TestRepositoryWithDependencyRevisions.test_0010_browse_tool_shed()TestRepositoryWithDependencyRevisions.test_0015_install_emboss_repository()TestRepositoryWithDependencyRevisions.test_0025_verify_installed_repository_metadata()
- tool_shed.test.functional.test_1040_install_repository_basic_circular_dependencies module
TestInstallingCircularDependenciesTestInstallingCircularDependencies.requires_galaxyTestInstallingCircularDependencies.test_0000_initiate_users()TestInstallingCircularDependencies.test_0005_create_freebayes_repository()TestInstallingCircularDependencies.test_0015_create_filtering_repository()TestInstallingCircularDependencies.test_0020_create_repository_dependencies()TestInstallingCircularDependencies.test_0025_install_freebayes_repository()TestInstallingCircularDependencies.test_0030_uninstall_filtering_repository()TestInstallingCircularDependencies.test_0035_reactivate_filtering_repository()TestInstallingCircularDependencies.test_0040_uninstall_freebayes_repository()TestInstallingCircularDependencies.test_0045_deactivate_filtering_repository()
- tool_shed.test.functional.test_1050_circular_dependencies_4_levels module
TestInstallRepositoryCircularDependenciesTestInstallRepositoryCircularDependencies.requires_galaxyTestInstallRepositoryCircularDependencies.test_0000_initiate_users()TestInstallRepositoryCircularDependencies.test_0005_create_convert_repository()TestInstallRepositoryCircularDependencies.test_0010_create_column_repository()TestInstallRepositoryCircularDependencies.test_0015_create_emboss_datatypes_repository()TestInstallRepositoryCircularDependencies.test_0020_create_emboss_repository()TestInstallRepositoryCircularDependencies.test_0025_create_filtering_repository()TestInstallRepositoryCircularDependencies.test_0030_create_freebayes_repository()TestInstallRepositoryCircularDependencies.test_0035_create_bismark_repository()TestInstallRepositoryCircularDependencies.test_0040_create_and_upload_dependency_definitions()TestInstallRepositoryCircularDependencies.test_0045_verify_repository_dependencies()TestInstallRepositoryCircularDependencies.test_0050_verify_tool_dependencies()TestInstallRepositoryCircularDependencies.test_0055_install_column_repository()TestInstallRepositoryCircularDependencies.test_0060_install_emboss_repository()TestInstallRepositoryCircularDependencies.test_0065_deactivate_bismark_repository()TestInstallRepositoryCircularDependencies.test_0070_uninstall_emboss_repository()TestInstallRepositoryCircularDependencies.test_0075_install_freebayes_repository()
- tool_shed.test.functional.test_1070_invalid_tool module
TestFreebayesRepositoryTestFreebayesRepository.requires_galaxyTestFreebayesRepository.test_0000_create_or_login_admin_user()TestFreebayesRepository.test_0005_ensure_existence_of_repository_and_category()TestFreebayesRepository.test_0010_browse_tool_shed()TestFreebayesRepository.test_0015_install_freebayes_repository()
- tool_shed.test.functional.test_1080_advanced_circular_dependency_installation module
TestRepositoryDependenciesTestRepositoryDependencies.requires_galaxyTestRepositoryDependencies.test_0000_create_or_login_admin_user()TestRepositoryDependencies.test_0005_create_and_populate_column_repository()TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()TestRepositoryDependencies.test_0015_upload_dependency_xml_if_needed()TestRepositoryDependencies.test_0020_install_convert_repository()TestRepositoryDependencies.test_0025_install_column_repository()TestRepositoryDependencies.test_0030_deactivate_convert_repository()TestRepositoryDependencies.test_0035_reactivate_convert_repository()TestRepositoryDependencies.test_0040_deactivate_column_repository()TestRepositoryDependencies.test_0045_deactivate_convert_repository()TestRepositoryDependencies.test_0050_reactivate_column_repository()TestRepositoryDependencies.test_0055_reactivate_convert_repository()TestRepositoryDependencies.test_0060_uninstall_column_repository()TestRepositoryDependencies.test_0065_reinstall_column_repository()TestRepositoryDependencies.test_0070_uninstall_convert_repository()TestRepositoryDependencies.test_0075_uninstall_column_repository()TestRepositoryDependencies.test_0080_reinstall_convert_repository()
- tool_shed.test.functional.test_1090_repository_dependency_handling module
TestRepositoryDependenciesTestRepositoryDependencies.requires_galaxyTestRepositoryDependencies.test_0000_create_or_login_admin_user()TestRepositoryDependencies.test_0005_create_and_populate_column_repository()TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()TestRepositoryDependencies.test_0015_create_and_upload_dependency_files()TestRepositoryDependencies.test_0020_install_repositories()TestRepositoryDependencies.test_0025_uninstall_column_repository()TestRepositoryDependencies.test_0030_uninstall_convert_repository()TestRepositoryDependencies.test_0035_reinstall_column_repository()TestRepositoryDependencies.test_0040_reinstall_convert_repository()
- tool_shed.test.functional.test_1100_install_updated_repository_dependencies module
TestRepositoryDependenciesTestRepositoryDependencies.requires_galaxyTestRepositoryDependencies.test_0000_create_or_login_admin_user()TestRepositoryDependencies.test_0005_create_and_populate_column_repository()TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()TestRepositoryDependencies.test_0015_install_and_uninstall_column_repository()TestRepositoryDependencies.test_0020_upload_dependency_xml()TestRepositoryDependencies.test_0025_verify_repository_dependency()TestRepositoryDependencies.test_0030_reinstall_column_repository()
- tool_shed.test.functional.test_1120_install_repository_with_complex_dependencies module
TestInstallingComplexRepositoryDependenciesTestInstallingComplexRepositoryDependencies.requires_galaxyTestInstallingComplexRepositoryDependencies.test_0000_initiate_users()TestInstallingComplexRepositoryDependencies.test_0005_create_bwa_package_repository()TestInstallingComplexRepositoryDependencies.test_0010_create_bwa_base_repository()TestInstallingComplexRepositoryDependencies.test_0015_generate_complex_repository_dependency_invalid_shed_url()TestInstallingComplexRepositoryDependencies.test_0020_generate_complex_repository_dependency_invalid_repository_name()TestInstallingComplexRepositoryDependencies.test_0025_generate_complex_repository_dependency_invalid_owner_name()TestInstallingComplexRepositoryDependencies.test_0030_generate_complex_repository_dependency_invalid_changeset_revision()TestInstallingComplexRepositoryDependencies.test_0035_generate_valid_complex_repository_dependency()TestInstallingComplexRepositoryDependencies.test_0040_update_tool_repository()TestInstallingComplexRepositoryDependencies.test_0045_install_base_repository()TestInstallingComplexRepositoryDependencies.test_0050_verify_installed_repositories()
- tool_shed.test.functional.test_1130_install_repository_with_invalid_repository_dependency module
TestBasicRepositoryDependenciesTestBasicRepositoryDependencies.requires_galaxyTestBasicRepositoryDependencies.test_0000_initiate_users()TestBasicRepositoryDependencies.test_0005_create_category()TestBasicRepositoryDependencies.test_0010_create_emboss_dependendent_column_maker_repository_and_upload_tarball()TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()TestBasicRepositoryDependencies.test_0025_generate_repository_dependency_with_invalid_url()TestBasicRepositoryDependencies.test_0030_generate_repository_dependency_with_invalid_name()TestBasicRepositoryDependencies.test_0035_generate_repository_dependency_with_invalid_owner()TestBasicRepositoryDependencies.test_0040_generate_repository_dependency_with_invalid_changeset_revision()TestBasicRepositoryDependencies.test_0045_install_repository_with_invalid_repository_dependency()
- tool_shed.test.functional.test_1140_simple_repository_dependency_multiple_owners module
tool_repository_long_descriptionTestInstallRepositoryMultipleOwnersTestInstallRepositoryMultipleOwners.requires_galaxyTestInstallRepositoryMultipleOwners.test_0000_initiate_users()TestInstallRepositoryMultipleOwners.test_0005_create_datatypes_repository()TestInstallRepositoryMultipleOwners.test_0010_verify_datatypes_repository()TestInstallRepositoryMultipleOwners.test_0015_create_tool_repository()TestInstallRepositoryMultipleOwners.test_0020_verify_tool_repository()TestInstallRepositoryMultipleOwners.test_0025_create_repository_dependency()TestInstallRepositoryMultipleOwners.test_0040_verify_repository_dependency()TestInstallRepositoryMultipleOwners.test_0045_install_blastxml_to_top_descr()TestInstallRepositoryMultipleOwners.test_0050_verify_repository_installation()
- tool_shed.test.functional.test_1150_datatype_converters module
- tool_shed.test.functional.test_1160_tool_help_images module
- tool_shed.test.functional.test_1170_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.requires_galaxyTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_repository_dependency()TestSimplePriorInstallation.test_0020_verify_repository_dependency()TestSimplePriorInstallation.test_0025_install_column_repository()TestSimplePriorInstallation.test_0030_verify_installation_order()
- tool_shed.test.functional.test_1180_circular_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.requires_galaxyTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_filtering_repository()TestSimplePriorInstallation.test_0020_create_repository_dependency()TestSimplePriorInstallation.test_0025_verify_repository_dependency()TestSimplePriorInstallation.test_0030_install_filtering_repository()TestSimplePriorInstallation.test_0035_verify_installation_order()TestSimplePriorInstallation.test_0040_deactivate_all_repositories()TestSimplePriorInstallation.test_0045_reactivate_filter_repository()TestSimplePriorInstallation.test_0050_verify_reinstallation_order()
- tool_shed.test.functional.test_1190_complex_prior_installation_required module
category_descriptionTestComplexPriorInstallationTestComplexPriorInstallation.requires_galaxyTestComplexPriorInstallation.test_0000_initiate_users()TestComplexPriorInstallation.test_0005_create_matplotlib_repository()TestComplexPriorInstallation.test_0010_create_numpy_repository()TestComplexPriorInstallation.test_0015_create_complex_repository_dependency()TestComplexPriorInstallation.test_0020_verify_generated_dependency()TestComplexPriorInstallation.test_0025_install_matplotlib_repository()TestComplexPriorInstallation.test_0030_verify_installation_order()
- tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository module
TestUninstallingAndReinstallingRepositoriesTestUninstallingAndReinstallingRepositories.requires_galaxyTestUninstallingAndReinstallingRepositories.test_0000_initiate_users()TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()TestUninstallingAndReinstallingRepositories.test_0010_install_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0015_uninstall_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0020_reinstall_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0025_deactivate_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0030_reactivate_filtering_repository()
- tool_shed.test.functional.test_1210_uninstall_reinstall_repository_with_tool_dependencies module
TestUninstallingAndReinstallingRepositoriesTestUninstallingAndReinstallingRepositories.requires_galaxyTestUninstallingAndReinstallingRepositories.test_0000_initiate_users()TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()TestUninstallingAndReinstallingRepositories.test_0010_install_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0015_uninstall_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0020_reinstall_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0025_deactivate_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0030_reactivate_freebayes_repository()
- tool_shed.test.functional.test_1220_uninstall_reinstall_repository_with_repository_dependencies module
- tool_shed.test.functional.test_1230_uninstall_reinstall_repository_with_dependency_revisions module
TestUninstallingAndReinstallingRepositoriesTestUninstallingAndReinstallingRepositories.requires_galaxyTestUninstallingAndReinstallingRepositories.test_0000_initiate_users()TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()TestUninstallingAndReinstallingRepositories.test_0010_install_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0015_uninstall_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0020_reinstall_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0025_deactivate_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0030_reactivate_emboss_repository()
- tool_shed.test.functional.test_1300_reset_all_metadata module
category_0060_nameTestResetInstalledRepositoryMetadataTestResetInstalledRepositoryMetadata.requires_galaxyTestResetInstalledRepositoryMetadata.test_0000_initiate_users()TestResetInstalledRepositoryMetadata.test_0005_create_categories()TestResetInstalledRepositoryMetadata.test_0010_create_repositories_from_0000_series()TestResetInstalledRepositoryMetadata.test_0015_create_repositories_from_0010_series()TestResetInstalledRepositoryMetadata.test_0020_create_repositories_from_0020_series()TestResetInstalledRepositoryMetadata.test_0025_create_repositories_from_0030_series()TestResetInstalledRepositoryMetadata.test_0030_create_repositories_from_0040_series()TestResetInstalledRepositoryMetadata.test_0035_create_repositories_from_0050_series()TestResetInstalledRepositoryMetadata.test_9900_install_all_missing_repositories()TestResetInstalledRepositoryMetadata.test_9905_reset_metadata_on_all_repositories()
- tool_shed.test.functional.test_1410_update_manager module
category_descriptionTestUpdateManagerTestUpdateManager.requires_galaxyTestUpdateManager.test_0000_initiate_users()TestUpdateManager.test_0005_create_filtering_repository()TestUpdateManager.test_0010_install_filtering_repository()TestUpdateManager.test_0015_upload_readme_file()TestUpdateManager.test_0020_check_for_displayed_update()
- tool_shed.test.functional.test_1430_repair_installed_repository module
column_repository_long_descriptionTestRepairRepositoryTestRepairRepository.requires_galaxyTestRepairRepository.test_0000_initiate_users_and_category()TestRepairRepository.test_0005_create_filter_repository()TestRepairRepository.test_0010_create_column_repository()TestRepairRepository.test_0015_create_repository_dependency()TestRepairRepository.test_0020_install_column_repository()TestRepairRepository.test_0025_uninstall_filter_repository()
- tool_shed.test.functional.test_1450_installing_datatypes_sniffers module
- tool_shed.test.functional.test_1460_data_managers module
data_manager_tar_fileTestDataManagersTestDataManagers.requires_galaxyTestDataManagers.test_0000_initiate_users_and_category()TestDataManagers.test_0010_create_data_manager_repository()TestDataManagers.test_0020_install_data_manager_repository()TestDataManagers.test_0030_verify_data_manager_tool()TestDataManagers.test_0040_verify_data_manager_data_table()
- tool_shed.test.functional.test_1470_updating_installed_repositories module
category_descriptionTestUpdateInstalledRepositoryTestUpdateInstalledRepository.requires_galaxyTestUpdateInstalledRepository.test_0000_initiate_users()TestUpdateInstalledRepository.test_0005_create_filtering_repository()TestUpdateInstalledRepository.test_0010_install_filtering_to_galaxy()TestUpdateInstalledRepository.test_0015_update_repository()TestUpdateInstalledRepository.test_0020_get_repository_updates()TestUpdateInstalledRepository.test_0025_uninstall_repository()TestUpdateInstalledRepository.test_0030_reinstall_repository()TestUpdateInstalledRepository.test_0035_verify_absence_of_ghosts()