Warning
This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.
tool_shed.test package¶
Tool shed functional Tests
Subpackages¶
- tool_shed.test.base package
- Submodules
- tool_shed.test.base.common module
- tool_shed.test.base.test_db_util module
sa_session()install_session()delete_obj()delete_user_roles()flush()get_all_repositories()get_all_installed_repositories()get_galaxy_repository_by_name_owner_changeset_revision()get_installed_repository_by_id()get_installed_repository_by_name_owner()get_role()get_repository_role_association()get_repository_by_id()get_repository_downloadable_revisions()get_repository_metadata_for_changeset_revision()get_role_by_name()get_user()get_user_by_name()mark_obj_deleted()refresh()ga_refresh()get_repository_by_name_and_owner()get_repository_metadata_by_repository_id_changeset_revision()
- tool_shed.test.base.twilltestcase module
ShedTwillTestCaseShedTwillTestCase.setUp()ShedTwillTestCase.check_for_strings()ShedTwillTestCase.check_page()ShedTwillTestCase.check_page_for_string()ShedTwillTestCase.check_string_not_in_page()ShedTwillTestCase.create()ShedTwillTestCase.last_page()ShedTwillTestCase.last_url()ShedTwillTestCase.login()ShedTwillTestCase.logout()ShedTwillTestCase.showforms()ShedTwillTestCase.submit_form()ShedTwillTestCase.visit_url()ShedTwillTestCase.write_temp_file()ShedTwillTestCase.assign_admin_role()ShedTwillTestCase.browse_category()ShedTwillTestCase.browse_repository()ShedTwillTestCase.browse_repository_dependencies()ShedTwillTestCase.browse_tool_shed()ShedTwillTestCase.browse_tool_dependencies()ShedTwillTestCase.browse_tools()ShedTwillTestCase.check_count_of_metadata_revisions_associated_with_repository()ShedTwillTestCase.check_exported_repository_dependency()ShedTwillTestCase.check_for_valid_tools()ShedTwillTestCase.check_galaxy_repository_db_status()ShedTwillTestCase.check_galaxy_repository_tool_panel_section()ShedTwillTestCase.check_repository_changelog()ShedTwillTestCase.check_repository_dependency()ShedTwillTestCase.check_repository_metadata()ShedTwillTestCase.check_repository_tools_for_changeset_revision()ShedTwillTestCase.check_repository_invalid_tools_for_changeset_revision()ShedTwillTestCase.check_string_count_in_page()ShedTwillTestCase.clone_repository()ShedTwillTestCase.commit_and_push()ShedTwillTestCase.create_category()ShedTwillTestCase.create_repository_dependency()ShedTwillTestCase.create_user_in_galaxy()ShedTwillTestCase.deactivate_repository()ShedTwillTestCase.delete_files_from_repository()ShedTwillTestCase.delete_repository()ShedTwillTestCase.display_installed_jobs_list_page()ShedTwillTestCase.display_installed_repository_manage_json()ShedTwillTestCase.display_manage_repository_page()ShedTwillTestCase.display_repository_clone_page()ShedTwillTestCase.display_repository_file_contents()ShedTwillTestCase.edit_repository_categories()ShedTwillTestCase.edit_repository_information()ShedTwillTestCase.enable_email_alerts()ShedTwillTestCase.escape_html()ShedTwillTestCase.expect_repo_created_strings()ShedTwillTestCase.fetch_repository_metadata()ShedTwillTestCase.galaxy_token()ShedTwillTestCase.galaxy_login()ShedTwillTestCase.galaxy_logout()ShedTwillTestCase.generate_complex_dependency_xml()ShedTwillTestCase.generate_simple_dependency_xml()ShedTwillTestCase.generate_temp_path()ShedTwillTestCase.get_datatypes_count()ShedTwillTestCase.get_filename()ShedTwillTestCase.get_hg_repo()ShedTwillTestCase.get_repositories_category_api()ShedTwillTestCase.get_or_create_repository()ShedTwillTestCase.get_repo_path()ShedTwillTestCase.get_repository_changelog_tuples()ShedTwillTestCase.get_repository_file_list()ShedTwillTestCase.get_repository_metadata()ShedTwillTestCase.get_repository_metadata_for_db_object()ShedTwillTestCase.get_repository_metadata_by_changeset_revision()ShedTwillTestCase.get_repository_metadata_revisions()ShedTwillTestCase.get_repository_tip()ShedTwillTestCase.get_tools_from_repository_metadata()ShedTwillTestCase.get_tool_panel_section_from_api()ShedTwillTestCase.get_tool_panel_section_from_repository_metadata()ShedTwillTestCase.grant_role_to_user()ShedTwillTestCase.grant_write_access()ShedTwillTestCase.load_citable_url()ShedTwillTestCase.load_changeset_in_tool_shed()ShedTwillTestCase.load_checkable_revisions()ShedTwillTestCase.load_display_tool_page()ShedTwillTestCase.load_invalid_tool_page()ShedTwillTestCase.preview_repository_in_tool_shed()ShedTwillTestCase.reactivate_repository()ShedTwillTestCase.reinstall_repository_api()ShedTwillTestCase.repository_is_new()ShedTwillTestCase.reset_installed_repository_metadata()ShedTwillTestCase.reset_metadata_on_selected_repositories()ShedTwillTestCase.reset_metadata_on_selected_installed_repositories()ShedTwillTestCase.reset_repository_metadata()ShedTwillTestCase.revoke_write_access()ShedTwillTestCase.search_for_valid_tools()ShedTwillTestCase.send_message_to_repository_owner()ShedTwillTestCase.set_form_value()ShedTwillTestCase.set_repository_deprecated()ShedTwillTestCase.set_repository_malicious()ShedTwillTestCase.tip_has_metadata()ShedTwillTestCase.undelete_repository()ShedTwillTestCase.uninstall_repository()ShedTwillTestCase.update_installed_repository_api()ShedTwillTestCase.update_tool_shed_status()ShedTwillTestCase.upload_file()ShedTwillTestCase.upload_url()ShedTwillTestCase.verify_installed_repositories()ShedTwillTestCase.verify_installed_repository_metadata_unchanged()ShedTwillTestCase.verify_installed_repository_no_tool_panel_section()ShedTwillTestCase.verify_installed_repository_data_table_entries()ShedTwillTestCase.verify_unchanged_repository_metadata()ShedTwillTestCase.visit_galaxy_url()ShedTwillTestCase.wait_for_repository_installation()
- tool_shed.test.functional package
- Submodules
- tool_shed.test.functional.test_0000_basic_repository_features module
TestBasicRepositoryFeaturesTestBasicRepositoryFeatures.test_0000_initiate_users()TestBasicRepositoryFeatures.test_0005_create_repository_without_categories()TestBasicRepositoryFeatures.test_0010_create_categories()TestBasicRepositoryFeatures.test_0015_create_repository()TestBasicRepositoryFeatures.test_0020_edit_repository()TestBasicRepositoryFeatures.test_0025_change_repository_category()TestBasicRepositoryFeatures.test_0030_grant_write_access()TestBasicRepositoryFeatures.test_0035_upload_filtering_1_1_0()TestBasicRepositoryFeatures.test_0040_verify_repository()TestBasicRepositoryFeatures.test_0045_alter_repository_states()TestBasicRepositoryFeatures.test_0050_display_repository_tip_file()TestBasicRepositoryFeatures.test_0055_upload_filtering_txt_file()TestBasicRepositoryFeatures.test_0060_upload_filtering_test_data()TestBasicRepositoryFeatures.test_0065_upload_filtering_2_2_0()TestBasicRepositoryFeatures.test_0070_verify_filtering_repository()TestBasicRepositoryFeatures.test_0075_upload_readme_txt_file()TestBasicRepositoryFeatures.test_0080_delete_readme_txt_file()TestBasicRepositoryFeatures.test_0085_search_for_valid_filter_tool()TestBasicRepositoryFeatures.test_0090_verify_repository_metadata()TestBasicRepositoryFeatures.test_0095_verify_reserved_repository_name_handling()TestBasicRepositoryFeatures.test_0100_verify_reserved_username_handling()TestBasicRepositoryFeatures.test_0105_contact_repository_owner()TestBasicRepositoryFeatures.test_0110_delete_filtering_repository()TestBasicRepositoryFeatures.test_0115_undelete_filtering_repository()TestBasicRepositoryFeatures.test_0120_enable_email_notifications()TestBasicRepositoryFeatures.test_0125_upload_new_readme_file()TestBasicRepositoryFeatures.test_0130_verify_handling_of_invalid_characters()TestBasicRepositoryFeatures.test_0135_api_get_repositories_in_category()TestBasicRepositoryFeatures.test_0140_view_invalid_changeset()
- tool_shed.test.functional.test_0010_repository_with_tool_dependencies module
repository_long_descriptionTestFreebayesRepositoryTestFreebayesRepository.test_0000_create_or_login_admin_user()TestFreebayesRepository.test_0005_create_category()TestFreebayesRepository.test_0010_create_freebayes_repository_and_upload_tool_xml()TestFreebayesRepository.test_0015_upload_missing_tool_data_table_conf_file()TestFreebayesRepository.test_0020_upload_missing_sample_loc_file()TestFreebayesRepository.test_0025_upload_malformed_tool_dependency_xml()TestFreebayesRepository.test_0030_upload_invalid_tool_dependency_xml()TestFreebayesRepository.test_0035_upload_valid_tool_dependency_xml()TestFreebayesRepository.test_0040_verify_tool_dependencies()
- tool_shed.test.functional.test_0020_basic_repository_dependencies module
TestBasicRepositoryDependenciesTestBasicRepositoryDependencies.test_0000_initiate_users()TestBasicRepositoryDependencies.test_0005_create_category()TestBasicRepositoryDependencies.test_0010_create_column_maker_repository()TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()TestBasicRepositoryDependencies.test_0025_generate_and_upload_repository_dependencies_xml()TestBasicRepositoryDependencies.test_0030_verify_emboss_5_dependencies()TestBasicRepositoryDependencies.test_0040_verify_repository_metadata()
- tool_shed.test.functional.test_0030_repository_dependency_revisions module
TestRepositoryDependencyRevisionsTestRepositoryDependencyRevisions.test_0000_initiate_users()TestRepositoryDependencyRevisions.test_0005_create_category()TestRepositoryDependencyRevisions.test_0010_create_emboss_5_repository()TestRepositoryDependencyRevisions.test_0015_create_emboss_6_repository()TestRepositoryDependencyRevisions.test_0020_create_dependent_repository()TestRepositoryDependencyRevisions.test_0025_create_emboss_repository()TestRepositoryDependencyRevisions.test_0030_generate_repository_dependencies_for_emboss_5()TestRepositoryDependencyRevisions.test_0035_generate_repository_dependencies_for_emboss_6()TestRepositoryDependencyRevisions.test_0040_generate_repository_dependency_on_emboss_5()TestRepositoryDependencyRevisions.test_0045_generate_repository_dependency_on_emboss_6()TestRepositoryDependencyRevisions.test_0050_verify_repository_dependency_revisions()TestRepositoryDependencyRevisions.test_0055_verify_repository_metadata()
- tool_shed.test.functional.test_0040_repository_circular_dependencies module
TestRepositoryCircularDependenciesTestRepositoryCircularDependencies.test_0000_initiate_users()TestRepositoryCircularDependencies.test_0005_create_category()TestRepositoryCircularDependencies.test_0010_create_freebayes_repository()TestRepositoryCircularDependencies.test_0015_create_filtering_repository()TestRepositoryCircularDependencies.test_0020_create_dependency_on_freebayes()TestRepositoryCircularDependencies.test_0025_create_dependency_on_filtering()TestRepositoryCircularDependencies.test_0030_verify_repository_dependencies()TestRepositoryCircularDependencies.test_0035_verify_repository_metadata()TestRepositoryCircularDependencies.test_0040_verify_tool_dependencies()
- tool_shed.test.functional.test_0050_circular_dependencies_4_levels module
TestRepositoryCircularDependenciesToNLevelsTestRepositoryCircularDependenciesToNLevels.test_0000_initiate_users()TestRepositoryCircularDependenciesToNLevels.test_0005_create_convert_repository()TestRepositoryCircularDependenciesToNLevels.test_0010_create_column_repository()TestRepositoryCircularDependenciesToNLevels.test_0015_create_emboss_datatypes_repository()TestRepositoryCircularDependenciesToNLevels.test_0020_create_emboss_repository()TestRepositoryCircularDependenciesToNLevels.test_0025_create_filtering_repository()TestRepositoryCircularDependenciesToNLevels.test_0030_create_freebayes_repository()TestRepositoryCircularDependenciesToNLevels.test_0035_create_bismark_repository()TestRepositoryCircularDependenciesToNLevels.test_0040_create_and_upload_dependency_definitions()TestRepositoryCircularDependenciesToNLevels.test_0045_verify_repository_dependencies()TestRepositoryCircularDependenciesToNLevels.test_0050_verify_tool_dependencies()TestRepositoryCircularDependenciesToNLevels.test_0055_verify_repository_metadata()
- tool_shed.test.functional.test_0070_invalid_tool module
- tool_shed.test.functional.test_0080_advanced_circular_dependencies module
TestRepositoryCircularDependenciesTestRepositoryCircularDependencies.test_0000_initiate_users()TestRepositoryCircularDependencies.test_0005_create_column_repository()TestRepositoryCircularDependencies.test_0005_create_convert_repository()TestRepositoryCircularDependencies.test_0020_create_repository_dependencies()TestRepositoryCircularDependencies.test_0025_create_dependency_on_filtering()TestRepositoryCircularDependencies.test_0030_verify_repository_dependencies()TestRepositoryCircularDependencies.test_0035_verify_repository_metadata()
- tool_shed.test.functional.test_0090_tool_search module
TestRepositoryCircularDependenciesAgainTestRepositoryCircularDependenciesAgain.test_0000_initiate_users()TestRepositoryCircularDependenciesAgain.test_0005_create_bwa_base_repository()TestRepositoryCircularDependenciesAgain.test_0010_create_bwa_color_repository()TestRepositoryCircularDependenciesAgain.test_0020_create_emboss_repository()TestRepositoryCircularDependenciesAgain.test_0025_create_filtering_repository()TestRepositoryCircularDependenciesAgain.test_0030_create_freebayes_repository()TestRepositoryCircularDependenciesAgain.test_0035_create_and_upload_dependency_definitions()TestRepositoryCircularDependenciesAgain.test_0040_verify_repository_dependencies()
- tool_shed.test.functional.test_0100_complex_repository_dependencies module
TestComplexRepositoryDependenciesTestComplexRepositoryDependencies.test_0000_initiate_users()TestComplexRepositoryDependencies.test_0005_create_bwa_package_repository()TestComplexRepositoryDependencies.test_0010_create_bwa_base_repository()TestComplexRepositoryDependencies.test_0015_generate_complex_repository_dependency_invalid_shed_url()TestComplexRepositoryDependencies.test_0020_generate_complex_repository_dependency_invalid_repository_name()TestComplexRepositoryDependencies.test_0025_generate_complex_repository_dependency_invalid_owner_name()TestComplexRepositoryDependencies.test_0030_generate_complex_repository_dependency_invalid_changeset_revision()TestComplexRepositoryDependencies.test_0035_generate_complex_repository_dependency()TestComplexRepositoryDependencies.test_0040_generate_tool_dependency()
- tool_shed.test.functional.test_0110_invalid_simple_repository_dependencies module
TestBasicRepositoryDependenciesTestBasicRepositoryDependencies.test_0000_initiate_users()TestBasicRepositoryDependencies.test_0005_create_category()TestBasicRepositoryDependencies.test_0010_create_emboss_datatypes_repository_and_upload_tarball()TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()TestBasicRepositoryDependencies.test_0025_generate_repository_dependency_with_invalid_url()TestBasicRepositoryDependencies.test_0030_generate_repository_dependency_with_invalid_name()TestBasicRepositoryDependencies.test_0035_generate_repository_dependency_with_invalid_owner()TestBasicRepositoryDependencies.test_0040_generate_repository_dependency_with_invalid_changeset_revision()
- tool_shed.test.functional.test_0120_simple_repository_dependency_multiple_owners module
tool_repository_long_descriptionTestRepositoryMultipleOwnersTestRepositoryMultipleOwners.test_0000_initiate_users()TestRepositoryMultipleOwners.test_0005_create_datatypes_repository()TestRepositoryMultipleOwners.test_0010_verify_datatypes_repository()TestRepositoryMultipleOwners.test_0015_create_tool_repository()TestRepositoryMultipleOwners.test_0020_verify_tool_repository()TestRepositoryMultipleOwners.test_0025_create_repository_dependency()TestRepositoryMultipleOwners.test_0040_verify_repository_dependency()
- tool_shed.test.functional.test_0130_datatype_converters module
- tool_shed.test.functional.test_0140_tool_help_images module
- tool_shed.test.functional.test_0150_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_repository_dependency()TestSimplePriorInstallation.test_0020_verify_repository_dependency()
- tool_shed.test.functional.test_0160_circular_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_filtering_repository()TestSimplePriorInstallation.test_0020_create_repository_dependency()TestSimplePriorInstallation.test_0025_verify_repository_dependency()
- tool_shed.test.functional.test_0170_complex_prior_installation_required module
category_descriptionTestComplexPriorInstallationTestComplexPriorInstallation.test_0000_initiate_users()TestComplexPriorInstallation.test_0005_create_matplotlib_repository()TestComplexPriorInstallation.test_0010_create_numpy_repository()TestComplexPriorInstallation.test_0015_create_complex_repository_dependency()TestComplexPriorInstallation.test_0020_verify_generated_dependency()
- tool_shed.test.functional.test_0300_reset_all_metadata module
TestResetAllRepositoryMetadataTestResetAllRepositoryMetadata.test_0000_initiate_users()TestResetAllRepositoryMetadata.test_0005_create_filtering_repository()TestResetAllRepositoryMetadata.test_0010_create_freebayes_repository()TestResetAllRepositoryMetadata.test_0015_create_datatypes_0020_repository()TestResetAllRepositoryMetadata.test_0020_create_emboss_0020_repository()TestResetAllRepositoryMetadata.test_0025_create_emboss_datatypes_0030_repository()TestResetAllRepositoryMetadata.test_0030_create_emboss_5_repository()TestResetAllRepositoryMetadata.test_0035_create_emboss_6_repository()TestResetAllRepositoryMetadata.test_0040_create_emboss_0030_repository()TestResetAllRepositoryMetadata.test_0045_create_repository_dependencies_for_0030()TestResetAllRepositoryMetadata.test_0050_create_freebayes_repository()TestResetAllRepositoryMetadata.test_0055_create_filtering_repository()TestResetAllRepositoryMetadata.test_0060_create_dependency_structure()TestResetAllRepositoryMetadata.test_0065_create_convert_repository()TestResetAllRepositoryMetadata.test_0070_create_column_repository()TestResetAllRepositoryMetadata.test_0075_create_emboss_datatypes_repository()TestResetAllRepositoryMetadata.test_0080_create_emboss_repository()TestResetAllRepositoryMetadata.test_0085_create_filtering_repository()TestResetAllRepositoryMetadata.test_0090_create_freebayes_repository()TestResetAllRepositoryMetadata.test_0095_create_bismark_repository()TestResetAllRepositoryMetadata.test_0100_create_and_upload_dependency_definitions()TestResetAllRepositoryMetadata.test_0110_reset_metadata_on_all_repositories()
- tool_shed.test.functional.test_0310_hg_api_features module
- tool_shed.test.functional.test_0400_repository_component_reviews module
- tool_shed.test.functional.test_0410_repository_component_review_access_control module
- tool_shed.test.functional.test_0420_citable_urls_for_repositories module
first_changeset_hashTestRepositoryCitableURLsTestRepositoryCitableURLs.test_0000_initiate_users()TestRepositoryCitableURLs.test_0005_create_repository()TestRepositoryCitableURLs.test_0010_upload_new_file_to_repository()TestRepositoryCitableURLs.test_0015_load_user_view_page()TestRepositoryCitableURLs.test_0020_load_repository_view_page()TestRepositoryCitableURLs.test_0025_load_view_page_for_previous_revision()TestRepositoryCitableURLs.test_0030_load_sharable_url_with_invalid_changeset_revision()TestRepositoryCitableURLs.test_0035_load_sharable_url_with_invalid_repository_name()TestRepositoryCitableURLs.test_0040_load_sharable_url_with_invalid_owner()
- tool_shed.test.functional.test_0430_browse_utilities module
freebayes_repository_long_descriptionTestToolShedBrowseUtilitiesTestToolShedBrowseUtilities.test_0000_initiate_users()TestToolShedBrowseUtilities.test_0010_create_emboss_repository()TestToolShedBrowseUtilities.test_0020_create_tool_dependency_repository()TestToolShedBrowseUtilities.test_0030_browse_tools()TestToolShedBrowseUtilities.test_0040_browse_tool_dependencies()
- tool_shed.test.functional.test_0440_deleting_dependency_definitions module
bwa_tool_dependency_repository_long_descriptionTestDeletedDependenciesTestDeletedDependencies.test_0000_initiate_users()TestDeletedDependencies.test_0005_create_column_maker_repository()TestDeletedDependencies.test_0010_create_convert_chars_repository()TestDeletedDependencies.test_0015_create_dependency_on_convert_chars()TestDeletedDependencies.test_0020_verify_dependency_metadata()TestDeletedDependencies.test_0025_delete_repository_dependency()TestDeletedDependencies.test_0030_create_bwa_package_repository()TestDeletedDependencies.test_0035_create_bwa_base_repository()TestDeletedDependencies.test_0040_create_dependency_on_bwa_package_repository()TestDeletedDependencies.test_0045_verify_dependency_metadata()TestDeletedDependencies.test_0050_delete_complex_repository_dependency()TestDeletedDependencies.test_0055_create_bwa_tool_dependency_repository()TestDeletedDependencies.test_0060_delete_bwa_tool_dependency_definition()TestDeletedDependencies.test_0065_reupload_bwa_tool_dependency_definition()
- tool_shed.test.functional.test_0460_upload_to_repository module
bwa_repository_long_descriptionTestAutomaticDependencyRevisionTestAutomaticDependencyRevision.test_0000_initiate_users()TestAutomaticDependencyRevision.test_0005_create_datatypes_repository()TestAutomaticDependencyRevision.test_0010_create_bwa_package_repository()TestAutomaticDependencyRevision.test_0015_create_tool_dependency_repositories()TestAutomaticDependencyRevision.test_0020_populate_complex_dependency_test_1_0460()TestAutomaticDependencyRevision.test_0025_populate_complex_dependency_test_2_0460()TestAutomaticDependencyRevision.test_0030_populate_complex_dependency_test_3_0460()TestAutomaticDependencyRevision.test_0035_create_repositories_for_url_upload()TestAutomaticDependencyRevision.test_0040_url_upload_to_complex_test()TestAutomaticDependencyRevision.test_0045_url_upload_to_complex_test()TestAutomaticDependencyRevision.test_0050_create_repositories_for_simple_dependencies()TestAutomaticDependencyRevision.test_0055_populate_repository_dependency_test_1_0460()TestAutomaticDependencyRevision.test_0060_populate_repository_dependency_test_2_0460()TestAutomaticDependencyRevision.test_0065_populate_repository_dependency_test_3_0460()TestAutomaticDependencyRevision.test_0070_create_repositories_for_url_upload()TestAutomaticDependencyRevision.test_0075_url_upload_to_complex_test()TestAutomaticDependencyRevision.test_0080_url_upload_to_complex_test()
- tool_shed.test.functional.test_0470_tool_dependency_repository_type module
emboss_repository_long_descriptionTestEnvironmentInheritanceTestEnvironmentInheritance.test_0000_initiate_users_and_category()TestEnvironmentInheritance.test_0005_create_libx11_repository()TestEnvironmentInheritance.test_0010_create_emboss_5_0_0_repository()TestEnvironmentInheritance.test_0015_create_emboss_5_repository()TestEnvironmentInheritance.test_0020_upload_updated_tool_dependency_to_package_x11()TestEnvironmentInheritance.test_0025_upload_updated_tool_dependency_to_package_emboss()TestEnvironmentInheritance.test_0030_upload_updated_tool_dependency_to_emboss_5_repository()TestEnvironmentInheritance.test_0035_modify_package_x11_repository_type()TestEnvironmentInheritance.test_0040_modify_package_emboss_repository_type()TestEnvironmentInheritance.test_0045_reset_repository_metadata()TestEnvironmentInheritance.test_0050_reset_emboss_5_metadata()
- tool_shed.test.functional.test_0480_tool_dependency_xml_verification module
- tool_shed.test.functional.test_0530_repository_admin_feature module
category_descriptionTestRepositoryAdminRoleTestRepositoryAdminRole.test_0000_initiate_users()TestRepositoryAdminRole.test_0005_create_filtering_repository()TestRepositoryAdminRole.test_0010_verify_repository_admin_role_exists()TestRepositoryAdminRole.test_0015_verify_repository_role_association()TestRepositoryAdminRole.test_0020_rename_repository()TestRepositoryAdminRole.test_0030_verify_access_denied()TestRepositoryAdminRole.test_0035_grant_admin_role()TestRepositoryAdminRole.test_0040_rename_repository_as_repository_admin()
- tool_shed.test.functional.test_0540_get_all_metadata_from_api module
category_descriptionTestGetAllMetadataTestGetAllMetadata.test_0000_initiate_users()TestGetAllMetadata.test_0005_create_bwa_package_repository()TestGetAllMetadata.test_0010_create_convert_repository()TestGetAllMetadata.test_0015_create_column_repository()TestGetAllMetadata.test_0020_create_repository_dependency()TestGetAllMetadata.test_0025_verify_dependency_json()
- tool_shed.test.functional.test_0550_metadata_updated_dependencies module
category_descriptionTestGetUpdatedMetadataTestGetUpdatedMetadata.test_0000_initiate_users()TestGetUpdatedMetadata.test_0005_freebayes_repository()TestGetUpdatedMetadata.test_0010_create_samtools_repository()TestGetUpdatedMetadata.test_0015_create_filtering_repository()TestGetUpdatedMetadata.test_0020_check_repository_dependency()TestGetUpdatedMetadata.test_0025_update_dependent_repositories()
- tool_shed.test.functional.test_1000_install_basic_repository module
TestBasicToolShedFeaturesTestBasicToolShedFeatures.test_0000_initiate_users()TestBasicToolShedFeatures.test_0005_ensure_repositories_and_categories_exist()TestBasicToolShedFeatures.test_0010_browse_tool_sheds()TestBasicToolShedFeatures.test_0015_browse_test_0000_category()TestBasicToolShedFeatures.test_0020_preview_filtering_repository()TestBasicToolShedFeatures.test_0025_install_filtering_repository()TestBasicToolShedFeatures.test_0030_install_filtering_repository_again()TestBasicToolShedFeatures.test_0035_verify_installed_repository_metadata()
- tool_shed.test.functional.test_1010_install_repository_with_tool_dependencies module
TestToolWithToolDependenciesTestToolWithToolDependencies.test_0000_initiate_users()TestToolWithToolDependencies.test_0005_ensure_repositories_and_categories_exist()TestToolWithToolDependencies.test_0010_browse_tool_shed()TestToolWithToolDependencies.test_0015_install_freebayes_repository()TestToolWithToolDependencies.test_0020_verify_installed_repository_metadata()TestToolWithToolDependencies.test_0025_verify_sample_files()
- tool_shed.test.functional.test_1020_install_repository_with_repository_dependencies module
TestToolWithRepositoryDependenciesTestToolWithRepositoryDependencies.test_0000_initiate_users()TestToolWithRepositoryDependencies.test_0005_ensure_repositories_and_categories_exist()TestToolWithRepositoryDependencies.test_0010_browse_tool_shed()TestToolWithRepositoryDependencies.test_0015_install_emboss_repository()TestToolWithRepositoryDependencies.test_0020_verify_installed_repository_metadata()TestToolWithRepositoryDependencies.test_0025_deactivate_datatypes_repository()TestToolWithRepositoryDependencies.test_0030_reactivate_datatypes_repository()
- tool_shed.test.functional.test_1030_install_repository_with_dependency_revisions module
TestRepositoryWithDependencyRevisionsTestRepositoryWithDependencyRevisions.test_0000_initiate_users()TestRepositoryWithDependencyRevisions.test_0005_ensure_repositories_and_categories_exist()TestRepositoryWithDependencyRevisions.test_0010_browse_tool_shed()TestRepositoryWithDependencyRevisions.test_0015_install_emboss_repository()TestRepositoryWithDependencyRevisions.test_0025_verify_installed_repository_metadata()
- tool_shed.test.functional.test_1040_install_repository_basic_circular_dependencies module
TestInstallingCircularDependenciesTestInstallingCircularDependencies.test_0000_initiate_users()TestInstallingCircularDependencies.test_0005_create_freebayes_repository()TestInstallingCircularDependencies.test_0015_create_filtering_repository()TestInstallingCircularDependencies.test_0020_create_repository_dependencies()TestInstallingCircularDependencies.test_0025_install_freebayes_repository()TestInstallingCircularDependencies.test_0030_uninstall_filtering_repository()TestInstallingCircularDependencies.test_0035_reactivate_filtering_repository()TestInstallingCircularDependencies.test_0040_uninstall_freebayes_repository()TestInstallingCircularDependencies.test_0045_deactivate_filtering_repository()
- tool_shed.test.functional.test_1050_circular_dependencies_4_levels module
TestInstallRepositoryCircularDependenciesTestInstallRepositoryCircularDependencies.test_0000_initiate_users()TestInstallRepositoryCircularDependencies.test_0005_create_convert_repository()TestInstallRepositoryCircularDependencies.test_0010_create_column_repository()TestInstallRepositoryCircularDependencies.test_0015_create_emboss_datatypes_repository()TestInstallRepositoryCircularDependencies.test_0020_create_emboss_repository()TestInstallRepositoryCircularDependencies.test_0025_create_filtering_repository()TestInstallRepositoryCircularDependencies.test_0030_create_freebayes_repository()TestInstallRepositoryCircularDependencies.test_0035_create_bismark_repository()TestInstallRepositoryCircularDependencies.test_0040_create_and_upload_dependency_definitions()TestInstallRepositoryCircularDependencies.test_0045_verify_repository_dependencies()TestInstallRepositoryCircularDependencies.test_0050_verify_tool_dependencies()TestInstallRepositoryCircularDependencies.test_0055_install_column_repository()TestInstallRepositoryCircularDependencies.test_0060_install_emboss_repository()TestInstallRepositoryCircularDependencies.test_0065_deactivate_bismark_repository()TestInstallRepositoryCircularDependencies.test_0070_uninstall_emboss_repository()TestInstallRepositoryCircularDependencies.test_0075_install_freebayes_repository()
- tool_shed.test.functional.test_1070_invalid_tool module
- tool_shed.test.functional.test_1080_advanced_circular_dependency_installation module
TestRepositoryDependenciesTestRepositoryDependencies.test_0000_create_or_login_admin_user()TestRepositoryDependencies.test_0005_create_and_populate_column_repository()TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()TestRepositoryDependencies.test_0015_upload_dependency_xml_if_needed()TestRepositoryDependencies.test_0020_install_convert_repository()TestRepositoryDependencies.test_0025_install_column_repository()TestRepositoryDependencies.test_0030_deactivate_convert_repository()TestRepositoryDependencies.test_0035_reactivate_convert_repository()TestRepositoryDependencies.test_0040_deactivate_column_repository()TestRepositoryDependencies.test_0045_deactivate_convert_repository()TestRepositoryDependencies.test_0050_reactivate_column_repository()TestRepositoryDependencies.test_0055_reactivate_convert_repository()TestRepositoryDependencies.test_0060_uninstall_column_repository()TestRepositoryDependencies.test_0065_reinstall_column_repository()TestRepositoryDependencies.test_0070_uninstall_convert_repository()TestRepositoryDependencies.test_0075_uninstall_column_repository()TestRepositoryDependencies.test_0080_reinstall_convert_repository()
- tool_shed.test.functional.test_1090_repository_dependency_handling module
TestRepositoryDependenciesTestRepositoryDependencies.test_0000_create_or_login_admin_user()TestRepositoryDependencies.test_0005_create_and_populate_column_repository()TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()TestRepositoryDependencies.test_0015_create_and_upload_dependency_files()TestRepositoryDependencies.test_0020_install_repositories()TestRepositoryDependencies.test_0025_uninstall_column_repository()TestRepositoryDependencies.test_0030_uninstall_convert_repository()TestRepositoryDependencies.test_0035_reinstall_column_repository()TestRepositoryDependencies.test_0040_reinstall_convert_repository()
- tool_shed.test.functional.test_1100_install_updated_repository_dependencies module
TestRepositoryDependenciesTestRepositoryDependencies.test_0000_create_or_login_admin_user()TestRepositoryDependencies.test_0005_create_and_populate_column_repository()TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()TestRepositoryDependencies.test_0015_install_and_uninstall_column_repository()TestRepositoryDependencies.test_0020_upload_dependency_xml()TestRepositoryDependencies.test_0025_verify_repository_dependency()TestRepositoryDependencies.test_0030_reinstall_column_repository()
- tool_shed.test.functional.test_1120_install_repository_with_complex_dependencies module
TestInstallingComplexRepositoryDependenciesTestInstallingComplexRepositoryDependencies.test_0000_initiate_users()TestInstallingComplexRepositoryDependencies.test_0005_create_bwa_package_repository()TestInstallingComplexRepositoryDependencies.test_0010_create_bwa_base_repository()TestInstallingComplexRepositoryDependencies.test_0015_generate_complex_repository_dependency_invalid_shed_url()TestInstallingComplexRepositoryDependencies.test_0020_generate_complex_repository_dependency_invalid_repository_name()TestInstallingComplexRepositoryDependencies.test_0025_generate_complex_repository_dependency_invalid_owner_name()TestInstallingComplexRepositoryDependencies.test_0030_generate_complex_repository_dependency_invalid_changeset_revision()TestInstallingComplexRepositoryDependencies.test_0035_generate_valid_complex_repository_dependency()TestInstallingComplexRepositoryDependencies.test_0040_update_tool_repository()TestInstallingComplexRepositoryDependencies.test_0045_install_base_repository()TestInstallingComplexRepositoryDependencies.test_0050_verify_installed_repositories()
- tool_shed.test.functional.test_1130_install_repository_with_invalid_repository_dependency module
TestBasicRepositoryDependenciesTestBasicRepositoryDependencies.test_0000_initiate_users()TestBasicRepositoryDependencies.test_0005_create_category()TestBasicRepositoryDependencies.test_0010_create_emboss_dependendent_column_maker_repository_and_upload_tarball()TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()TestBasicRepositoryDependencies.test_0025_generate_repository_dependency_with_invalid_url()TestBasicRepositoryDependencies.test_0030_generate_repository_dependency_with_invalid_name()TestBasicRepositoryDependencies.test_0035_generate_repository_dependency_with_invalid_owner()TestBasicRepositoryDependencies.test_0040_generate_repository_dependency_with_invalid_changeset_revision()TestBasicRepositoryDependencies.test_0045_install_repository_with_invalid_repository_dependency()
- tool_shed.test.functional.test_1140_simple_repository_dependency_multiple_owners module
tool_repository_long_descriptionTestInstallRepositoryMultipleOwnersTestInstallRepositoryMultipleOwners.test_0000_initiate_users()TestInstallRepositoryMultipleOwners.test_0005_create_datatypes_repository()TestInstallRepositoryMultipleOwners.test_0010_verify_datatypes_repository()TestInstallRepositoryMultipleOwners.test_0015_create_tool_repository()TestInstallRepositoryMultipleOwners.test_0020_verify_tool_repository()TestInstallRepositoryMultipleOwners.test_0025_create_repository_dependency()TestInstallRepositoryMultipleOwners.test_0040_verify_repository_dependency()TestInstallRepositoryMultipleOwners.test_0045_install_blastxml_to_top_descr()TestInstallRepositoryMultipleOwners.test_0050_verify_repository_installation()
- tool_shed.test.functional.test_1150_datatype_converters module
- tool_shed.test.functional.test_1160_tool_help_images module
- tool_shed.test.functional.test_1170_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_repository_dependency()TestSimplePriorInstallation.test_0020_verify_repository_dependency()TestSimplePriorInstallation.test_0025_install_column_repository()TestSimplePriorInstallation.test_0030_verify_installation_order()
- tool_shed.test.functional.test_1180_circular_prior_installation_required module
category_descriptionTestSimplePriorInstallationTestSimplePriorInstallation.test_0000_initiate_users()TestSimplePriorInstallation.test_0005_create_convert_repository()TestSimplePriorInstallation.test_0010_create_column_repository()TestSimplePriorInstallation.test_0015_create_filtering_repository()TestSimplePriorInstallation.test_0020_create_repository_dependency()TestSimplePriorInstallation.test_0025_verify_repository_dependency()TestSimplePriorInstallation.test_0030_install_filtering_repository()TestSimplePriorInstallation.test_0035_verify_installation_order()TestSimplePriorInstallation.test_0040_deactivate_all_repositories()TestSimplePriorInstallation.test_0045_reactivate_filter_repository()TestSimplePriorInstallation.test_0050_verify_reinstallation_order()
- tool_shed.test.functional.test_1190_complex_prior_installation_required module
category_descriptionTestComplexPriorInstallationTestComplexPriorInstallation.test_0000_initiate_users()TestComplexPriorInstallation.test_0005_create_matplotlib_repository()TestComplexPriorInstallation.test_0010_create_numpy_repository()TestComplexPriorInstallation.test_0015_create_complex_repository_dependency()TestComplexPriorInstallation.test_0020_verify_generated_dependency()TestComplexPriorInstallation.test_0025_install_matplotlib_repository()TestComplexPriorInstallation.test_0030_verify_installation_order()
- tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository module
TestUninstallingAndReinstallingRepositoriesTestUninstallingAndReinstallingRepositories.test_0000_initiate_users()TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()TestUninstallingAndReinstallingRepositories.test_0010_install_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0015_uninstall_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0020_reinstall_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0025_deactivate_filtering_repository()TestUninstallingAndReinstallingRepositories.test_0030_reactivate_filtering_repository()
- tool_shed.test.functional.test_1210_uninstall_reinstall_repository_with_tool_dependencies module
TestUninstallingAndReinstallingRepositoriesTestUninstallingAndReinstallingRepositories.test_0000_initiate_users()TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()TestUninstallingAndReinstallingRepositories.test_0010_install_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0015_uninstall_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0020_reinstall_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0025_deactivate_freebayes_repository()TestUninstallingAndReinstallingRepositories.test_0030_reactivate_freebayes_repository()
- tool_shed.test.functional.test_1220_uninstall_reinstall_repository_with_repository_dependencies module
- tool_shed.test.functional.test_1230_uninstall_reinstall_repository_with_dependency_revisions module
TestUninstallingAndReinstallingRepositoriesTestUninstallingAndReinstallingRepositories.test_0000_initiate_users()TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()TestUninstallingAndReinstallingRepositories.test_0010_install_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0015_uninstall_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0020_reinstall_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0025_deactivate_emboss_repository()TestUninstallingAndReinstallingRepositories.test_0030_reactivate_emboss_repository()
- tool_shed.test.functional.test_1300_reset_all_metadata module
category_0060_nameTestResetInstalledRepositoryMetadataTestResetInstalledRepositoryMetadata.test_0000_initiate_users()TestResetInstalledRepositoryMetadata.test_0005_create_categories()TestResetInstalledRepositoryMetadata.test_0010_create_repositories_from_0000_series()TestResetInstalledRepositoryMetadata.test_0015_create_repositories_from_0010_series()TestResetInstalledRepositoryMetadata.test_0020_create_repositories_from_0020_series()TestResetInstalledRepositoryMetadata.test_0025_create_repositories_from_0030_series()TestResetInstalledRepositoryMetadata.test_0030_create_repositories_from_0040_series()TestResetInstalledRepositoryMetadata.test_0035_create_repositories_from_0050_series()TestResetInstalledRepositoryMetadata.test_9900_install_all_missing_repositories()TestResetInstalledRepositoryMetadata.test_9905_reset_metadata_on_all_repositories()
- tool_shed.test.functional.test_1410_update_manager module
- tool_shed.test.functional.test_1430_repair_installed_repository module
column_repository_long_descriptionTestRepairRepositoryTestRepairRepository.test_0000_initiate_users_and_category()TestRepairRepository.test_0005_create_filter_repository()TestRepairRepository.test_0010_create_column_repository()TestRepairRepository.test_0015_create_repository_dependency()TestRepairRepository.test_0020_install_column_repository()TestRepairRepository.test_0025_uninstall_filter_repository()
- tool_shed.test.functional.test_1450_installing_datatypes_sniffers module
- tool_shed.test.functional.test_1460_data_managers module
- tool_shed.test.functional.test_1470_updating_installed_repositories module
category_descriptionTestUpdateInstalledRepositoryTestUpdateInstalledRepository.test_0000_initiate_users()TestUpdateInstalledRepository.test_0005_create_filtering_repository()TestUpdateInstalledRepository.test_0010_install_filtering_to_galaxy()TestUpdateInstalledRepository.test_0015_update_repository()TestUpdateInstalledRepository.test_0020_get_repository_updates()TestUpdateInstalledRepository.test_0025_uninstall_repository()TestUpdateInstalledRepository.test_0030_reinstall_repository()TestUpdateInstalledRepository.test_0035_verify_absence_of_ghosts()