tool_shed.test package

Tool shed functional Tests

Subpackages

• tool_shed.test.base package
  • Submodules
  • tool_shed.test.base.common module
  • tool_shed.test.base.test_db_util module
    • sa_session()
    • install_session()
    • flush()
    • get_all_repositories()
    • get_all_installed_repositories()
    • get_installed_repository_by_id()
    • get_installed_repository_by_name_owner()
    • get_role()
    • get_repository_role_association()
    • get_repository_by_id()
    • get_user()
    • refresh()
    • ga_refresh()
    • get_repository_by_name_and_owner()
    • get_repository_metadata_by_repository_id_changeset_revision()
  • tool_shed.test.base.twilltestcase module
    • ToolShedInstallationClient
      • ToolShedInstallationClient.check_galaxy_repository_tool_panel_section()
      • ToolShedInstallationClient.setup()
      • ToolShedInstallationClient.deactivate_repository()
      • ToolShedInstallationClient.display_installed_jobs_list_page()
      • ToolShedInstallationClient.installed_repository_extended_info()
      • ToolShedInstallationClient.install_repository()
      • ToolShedInstallationClient.reactivate_repository()
      • ToolShedInstallationClient.reset_metadata_on_installed_repositories()
      • ToolShedInstallationClient.reset_installed_repository_metadata()
      • ToolShedInstallationClient.uninstall_repository()
      • ToolShedInstallationClient.update_installed_repository()
      • ToolShedInstallationClient.tool_data_path
      • ToolShedInstallationClient.shed_tool_data_table_conf
      • ToolShedInstallationClient.get_tool_names()
      • ToolShedInstallationClient.get_installed_repository_by_name_owner()
      • ToolShedInstallationClient.get_installed_repositories_by_name_owner()
      • ToolShedInstallationClient.get_installed_repository_for()
      • ToolShedInstallationClient.get_all_installed_repositories()
      • ToolShedInstallationClient.refresh_tool_shed_repository()
    • GalaxyInteractorToolShedInstallationClient
      • GalaxyInteractorToolShedInstallationClient.__init__()
      • GalaxyInteractorToolShedInstallationClient.setup()
      • GalaxyInteractorToolShedInstallationClient.check_galaxy_repository_tool_panel_section()
      • GalaxyInteractorToolShedInstallationClient.deactivate_repository()
      • GalaxyInteractorToolShedInstallationClient.display_installed_jobs_list_page()
      • GalaxyInteractorToolShedInstallationClient.installed_repository_extended_info()
      • GalaxyInteractorToolShedInstallationClient.install_repository()
      • GalaxyInteractorToolShedInstallationClient.reactivate_repository()
      • GalaxyInteractorToolShedInstallationClient.reset_metadata_on_installed_repositories()
      • GalaxyInteractorToolShedInstallationClient.uninstall_repository()
      • GalaxyInteractorToolShedInstallationClient.update_installed_repository()
      • GalaxyInteractorToolShedInstallationClient.reset_installed_repository_metadata()
      • GalaxyInteractorToolShedInstallationClient.tool_data_path
      • GalaxyInteractorToolShedInstallationClient.shed_tool_data_table_conf
      • GalaxyInteractorToolShedInstallationClient.get_tool_names()
      • GalaxyInteractorToolShedInstallationClient.get_installed_repository_by_name_owner()
      • GalaxyInteractorToolShedInstallationClient.get_installed_repositories_by_name_owner()
      • GalaxyInteractorToolShedInstallationClient.get_installed_repository_for()
      • GalaxyInteractorToolShedInstallationClient.get_all_installed_repositories()
      • GalaxyInteractorToolShedInstallationClient.refresh_tool_shed_repository()
    • StandaloneToolShedInstallationClient
      • StandaloneToolShedInstallationClient.__init__()
      • StandaloneToolShedInstallationClient.setup()
      • StandaloneToolShedInstallationClient.check_galaxy_repository_tool_panel_section()
      • StandaloneToolShedInstallationClient.deactivate_repository()
      • StandaloneToolShedInstallationClient.display_installed_jobs_list_page()
      • StandaloneToolShedInstallationClient.installed_repository_extended_info()
      • StandaloneToolShedInstallationClient.install_repository()
      • StandaloneToolShedInstallationClient.reactivate_repository()
      • StandaloneToolShedInstallationClient.reset_metadata_on_installed_repositories()
      • StandaloneToolShedInstallationClient.reset_installed_repository_metadata()
      • StandaloneToolShedInstallationClient.uninstall_repository()
      • StandaloneToolShedInstallationClient.update_installed_repository()
      • StandaloneToolShedInstallationClient.get_installed_repository_by_name_owner()
      • StandaloneToolShedInstallationClient.get_installed_repositories_by_name_owner()
      • StandaloneToolShedInstallationClient.get_installed_repository_for()
      • StandaloneToolShedInstallationClient.get_all_installed_repositories()
      • StandaloneToolShedInstallationClient.refresh_tool_shed_repository()
      • StandaloneToolShedInstallationClient.shed_tool_data_table_conf
      • StandaloneToolShedInstallationClient.tool_data_path
      • StandaloneToolShedInstallationClient.get_tool_names()
    • ShedTwillTestCase
      • ShedTwillTestCase.requires_galaxy
      • ShedTwillTestCase.setUp()
      • ShedTwillTestCase.inject_shed_browser()
      • ShedTwillTestCase.check_for_strings()
      • ShedTwillTestCase.check_page()
      • ShedTwillTestCase.check_page_for_string()
      • ShedTwillTestCase.check_string_not_in_page()
      • ShedTwillTestCase.invalid_tools_labels
      • ShedTwillTestCase.create()
      • ShedTwillTestCase.last_page()
      • ShedTwillTestCase.user_api_interactor()
      • ShedTwillTestCase.user_populator()
      • ShedTwillTestCase.login()
      • ShedTwillTestCase.is_v2
      • ShedTwillTestCase.logout()
      • ShedTwillTestCase.submit_form()
      • ShedTwillTestCase.join_url_and_params()
      • ShedTwillTestCase.visit_url()
      • ShedTwillTestCase.write_temp_file()
      • ShedTwillTestCase.assign_admin_role()
      • ShedTwillTestCase.browse_category()
      • ShedTwillTestCase.browse_repository()
      • ShedTwillTestCase.browse_repository_dependencies()
      • ShedTwillTestCase.browse_tool_shed()
      • ShedTwillTestCase.browse_tool_dependencies()
      • ShedTwillTestCase.browse_tools()
      • ShedTwillTestCase.check_count_of_metadata_revisions_associated_with_repository()
      • ShedTwillTestCase.check_for_valid_tools()
      • ShedTwillTestCase.check_galaxy_repository_db_status()
      • ShedTwillTestCase.check_repository_changelog()
      • ShedTwillTestCase.check_repository_dependency()
      • ShedTwillTestCase.check_repository_metadata()
      • ShedTwillTestCase.check_repository_tools_for_changeset_revision()
      • ShedTwillTestCase.check_repository_invalid_tools_for_changeset_revision()
      • ShedTwillTestCase.check_string_count_in_page()
      • ShedTwillTestCase.check_galaxy_repository_tool_panel_section()
      • ShedTwillTestCase.clone_repository()
      • ShedTwillTestCase.commit_and_push()
      • ShedTwillTestCase.create_category()
      • ShedTwillTestCase.create_repository_dependency()
      • ShedTwillTestCase.deactivate_repository()
      • ShedTwillTestCase.cloned_repo()
      • ShedTwillTestCase.setup_freebayes_0010_repo()
      • ShedTwillTestCase.add_file_to_repository()
      • ShedTwillTestCase.add_tar_to_repository()
      • ShedTwillTestCase.commit_tar_to_repository()
      • ShedTwillTestCase.delete_files_from_repository()
      • ShedTwillTestCase.delete_repository()
      • ShedTwillTestCase.display_installed_jobs_list_page()
      • ShedTwillTestCase.display_installed_repository_manage_json()
      • ShedTwillTestCase.display_manage_repository_page()
      • ShedTwillTestCase.display_repository_clone_page()
      • ShedTwillTestCase.display_repository_file_contents()
      • ShedTwillTestCase.edit_repository_categories()
      • ShedTwillTestCase.edit_repository_information()
      • ShedTwillTestCase.enable_email_alerts()
      • ShedTwillTestCase.escape_html()
      • ShedTwillTestCase.expect_repo_created_strings()
      • ShedTwillTestCase.fetch_repository_metadata()
      • ShedTwillTestCase.generate_complex_dependency_xml()
      • ShedTwillTestCase.generate_simple_dependency_xml()
      • ShedTwillTestCase.generate_temp_path()
      • ShedTwillTestCase.get_all_installed_repositories()
      • ShedTwillTestCase.get_filename()
      • ShedTwillTestCase.get_hg_repo()
      • ShedTwillTestCase.get_repositories_category_api()
      • ShedTwillTestCase.get_or_create_repository()
      • ShedTwillTestCase.get_repo_path()
      • ShedTwillTestCase.get_repository_changelog_tuples()
      • ShedTwillTestCase.get_repository_file_list()
      • ShedTwillTestCase.get_repository_metadata()
      • ShedTwillTestCase.get_repository_metadata_for_db_object()
      • ShedTwillTestCase.get_repository_metadata_by_changeset_revision()
      • ShedTwillTestCase.get_repository_metadata_revisions()
      • ShedTwillTestCase.get_repository_tip()
      • ShedTwillTestCase.get_repository_first_revision()
      • ShedTwillTestCase.get_tools_from_repository_metadata()
      • ShedTwillTestCase.grant_role_to_user()
      • ShedTwillTestCase.grant_write_access()
      • ShedTwillTestCase.load_citable_url()
      • ShedTwillTestCase.load_changeset_in_tool_shed()
      • ShedTwillTestCase.load_checkable_revisions()
      • ShedTwillTestCase.load_display_tool_page()
      • ShedTwillTestCase.load_invalid_tool_page()
      • ShedTwillTestCase.preview_repository_in_tool_shed()
      • ShedTwillTestCase.reactivate_repository()
      • ShedTwillTestCase.reinstall_repository_api()
      • ShedTwillTestCase.repository_is_new()
      • ShedTwillTestCase.reset_metadata_on_selected_repositories()
      • ShedTwillTestCase.reset_metadata_on_installed_repositories()
      • ShedTwillTestCase.reset_repository_metadata()
      • ShedTwillTestCase.revoke_write_access()
      • ShedTwillTestCase.search_for_valid_tools()
      • ShedTwillTestCase.set_repository_deprecated()
      • ShedTwillTestCase.set_repository_malicious()
      • ShedTwillTestCase.tip_has_metadata()
      • ShedTwillTestCase.undelete_repository()
      • ShedTwillTestCase.update_installed_repository()
      • ShedTwillTestCase.verify_installed_repositories()
      • ShedTwillTestCase.verify_installed_repository_metadata_unchanged()
      • ShedTwillTestCase.verify_installed_repository_no_tool_panel_section()
      • ShedTwillTestCase.shed_tool_data_table_conf
      • ShedTwillTestCase.tool_data_path
      • ShedTwillTestCase.verify_installed_repository_data_table_entries()
      • ShedTwillTestCase.verify_unchanged_repository_metadata()
      • ShedTwillTestCase.pytestmark
    • get_installed_repository()
• tool_shed.test.functional package
  • Submodules
  • tool_shed.test.functional.test_0000_basic_repository_features module
    • TestBasicRepositoryFeatures
      • TestBasicRepositoryFeatures.test_0000_initiate_users()
      • TestBasicRepositoryFeatures.test_0005_create_repository_without_categories()
      • TestBasicRepositoryFeatures.test_0010_create_categories()
      • TestBasicRepositoryFeatures.test_0015_create_repository()
      • TestBasicRepositoryFeatures.test_0020_edit_repository()
      • TestBasicRepositoryFeatures.test_0025_change_repository_category()
      • TestBasicRepositoryFeatures.test_0030_grant_write_access()
      • TestBasicRepositoryFeatures.test_0035_upload_filtering_1_1_0()
      • TestBasicRepositoryFeatures.test_0040_verify_repository()
      • TestBasicRepositoryFeatures.test_0045_alter_repository_states()
      • TestBasicRepositoryFeatures.test_0050_display_repository_tip_file()
      • TestBasicRepositoryFeatures.test_0055_upload_filtering_txt_file()
      • TestBasicRepositoryFeatures.test_0060_upload_filtering_test_data()
      • TestBasicRepositoryFeatures.test_0065_upload_filtering_2_2_0()
      • TestBasicRepositoryFeatures.test_0070_verify_filtering_repository()
      • TestBasicRepositoryFeatures.test_0075_upload_readme_txt_file()
      • TestBasicRepositoryFeatures.test_0080_delete_readme_txt_file()
      • TestBasicRepositoryFeatures.test_0085_search_for_valid_filter_tool()
      • TestBasicRepositoryFeatures.test_0090_verify_repository_metadata()
      • TestBasicRepositoryFeatures.test_0095_verify_reserved_repository_name_handling()
      • TestBasicRepositoryFeatures.test_0100_verify_reserved_username_handling()
      • TestBasicRepositoryFeatures.test_0105_contact_repository_owner()
      • TestBasicRepositoryFeatures.test_0110_delete_filtering_repository()
      • TestBasicRepositoryFeatures.test_0115_undelete_filtering_repository()
      • TestBasicRepositoryFeatures.test_0120_enable_email_notifications()
      • TestBasicRepositoryFeatures.test_0125_upload_new_readme_file()
      • TestBasicRepositoryFeatures.test_0130_verify_handling_of_invalid_characters()
      • TestBasicRepositoryFeatures.test_0135_api_get_repositories_in_category()
      • TestBasicRepositoryFeatures.test_0140_view_invalid_changeset()
      • TestBasicRepositoryFeatures.host
      • TestBasicRepositoryFeatures.port
      • TestBasicRepositoryFeatures.url
      • TestBasicRepositoryFeatures.keepOutdir
      • TestBasicRepositoryFeatures.test_data_resolver
  • tool_shed.test.functional.test_0010_repository_with_tool_dependencies module
    • repository_long_description
    • TestFreebayesRepository
      • TestFreebayesRepository.test_0000_create_or_login_admin_user()
      • TestFreebayesRepository.test_0005_create_category()
      • TestFreebayesRepository.test_0010_create_freebayes_repository_and_upload_tool_xml()
      • TestFreebayesRepository.test_0015_upload_missing_tool_data_table_conf_file()
      • TestFreebayesRepository.test_0020_upload_missing_sample_loc_file()
      • TestFreebayesRepository.test_0025_upload_malformed_tool_dependency_xml()
      • TestFreebayesRepository.test_0030_upload_invalid_tool_dependency_xml()
      • TestFreebayesRepository.test_0035_upload_valid_tool_dependency_xml()
      • TestFreebayesRepository.test_0040_verify_tool_dependencies()
      • TestFreebayesRepository.host
      • TestFreebayesRepository.port
      • TestFreebayesRepository.url
      • TestFreebayesRepository.keepOutdir
      • TestFreebayesRepository.test_data_resolver
  • tool_shed.test.functional.test_0020_basic_repository_dependencies module
    • TestBasicRepositoryDependencies
      • TestBasicRepositoryDependencies.test_0000_initiate_users()
      • TestBasicRepositoryDependencies.test_0005_create_category()
      • TestBasicRepositoryDependencies.test_0010_create_column_maker_repository()
      • TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()
      • TestBasicRepositoryDependencies.test_0025_generate_and_upload_repository_dependencies_xml()
      • TestBasicRepositoryDependencies.test_0030_verify_emboss_5_dependencies()
      • TestBasicRepositoryDependencies.test_0040_verify_repository_metadata()
      • TestBasicRepositoryDependencies.host
      • TestBasicRepositoryDependencies.port
      • TestBasicRepositoryDependencies.url
      • TestBasicRepositoryDependencies.keepOutdir
      • TestBasicRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_0030_repository_dependency_revisions module
    • TestRepositoryDependencyRevisions
      • TestRepositoryDependencyRevisions.test_0000_initiate_users()
      • TestRepositoryDependencyRevisions.test_0005_create_category()
      • TestRepositoryDependencyRevisions.test_0010_create_emboss_5_repository()
      • TestRepositoryDependencyRevisions.test_0015_create_emboss_6_repository()
      • TestRepositoryDependencyRevisions.test_0020_create_dependent_repository()
      • TestRepositoryDependencyRevisions.test_0025_create_emboss_repository()
      • TestRepositoryDependencyRevisions.test_0030_generate_repository_dependencies_for_emboss_5()
      • TestRepositoryDependencyRevisions.test_0035_generate_repository_dependencies_for_emboss_6()
      • TestRepositoryDependencyRevisions.test_0040_generate_repository_dependency_on_emboss_5()
      • TestRepositoryDependencyRevisions.test_0045_generate_repository_dependency_on_emboss_6()
      • TestRepositoryDependencyRevisions.test_0050_verify_repository_dependency_revisions()
      • TestRepositoryDependencyRevisions.test_0055_verify_repository_metadata()
      • TestRepositoryDependencyRevisions.host
      • TestRepositoryDependencyRevisions.port
      • TestRepositoryDependencyRevisions.url
      • TestRepositoryDependencyRevisions.keepOutdir
      • TestRepositoryDependencyRevisions.test_data_resolver
  • tool_shed.test.functional.test_0040_repository_circular_dependencies module
    • TestRepositoryCircularDependencies
      • TestRepositoryCircularDependencies.test_0000_initiate_users()
      • TestRepositoryCircularDependencies.test_0005_create_category()
      • TestRepositoryCircularDependencies.test_0010_create_freebayes_repository()
      • TestRepositoryCircularDependencies.test_0015_create_filtering_repository()
      • TestRepositoryCircularDependencies.test_0020_create_dependency_on_freebayes()
      • TestRepositoryCircularDependencies.test_0025_create_dependency_on_filtering()
      • TestRepositoryCircularDependencies.test_0030_verify_repository_dependencies()
      • TestRepositoryCircularDependencies.test_0035_verify_repository_metadata()
      • TestRepositoryCircularDependencies.test_0040_verify_tool_dependencies()
      • TestRepositoryCircularDependencies.host
      • TestRepositoryCircularDependencies.port
      • TestRepositoryCircularDependencies.url
      • TestRepositoryCircularDependencies.keepOutdir
      • TestRepositoryCircularDependencies.test_data_resolver
  • tool_shed.test.functional.test_0050_circular_dependencies_4_levels module
    • TestRepositoryCircularDependenciesToNLevels
      • TestRepositoryCircularDependenciesToNLevels.test_0000_initiate_users()
      • TestRepositoryCircularDependenciesToNLevels.test_0005_create_convert_repository()
      • TestRepositoryCircularDependenciesToNLevels.test_0010_create_column_repository()
      • TestRepositoryCircularDependenciesToNLevels.test_0015_create_emboss_datatypes_repository()
      • TestRepositoryCircularDependenciesToNLevels.test_0020_create_emboss_repository()
      • TestRepositoryCircularDependenciesToNLevels.test_0025_create_filtering_repository()
      • TestRepositoryCircularDependenciesToNLevels.test_0030_create_freebayes_repository()
      • TestRepositoryCircularDependenciesToNLevels.test_0035_create_bismark_repository()
      • TestRepositoryCircularDependenciesToNLevels.test_0040_create_and_upload_dependency_definitions()
      • TestRepositoryCircularDependenciesToNLevels.test_0045_verify_repository_dependencies()
      • TestRepositoryCircularDependenciesToNLevels.test_0050_verify_tool_dependencies()
      • TestRepositoryCircularDependenciesToNLevels.test_0055_verify_repository_metadata()
      • TestRepositoryCircularDependenciesToNLevels.host
      • TestRepositoryCircularDependenciesToNLevels.port
      • TestRepositoryCircularDependenciesToNLevels.url
      • TestRepositoryCircularDependenciesToNLevels.keepOutdir
      • TestRepositoryCircularDependenciesToNLevels.test_data_resolver
  • tool_shed.test.functional.test_0070_invalid_tool module
    • TestBismarkRepository
      • TestBismarkRepository.test_0000_create_or_login_admin_user()
      • TestBismarkRepository.test_0005_create_category_and_repository()
      • TestBismarkRepository.host
      • TestBismarkRepository.port
      • TestBismarkRepository.url
      • TestBismarkRepository.keepOutdir
      • TestBismarkRepository.test_data_resolver
  • tool_shed.test.functional.test_0080_advanced_circular_dependencies module
    • TestRepositoryCircularDependencies
      • TestRepositoryCircularDependencies.test_0000_initiate_users()
      • TestRepositoryCircularDependencies.test_0005_create_column_repository()
      • TestRepositoryCircularDependencies.test_0005_create_convert_repository()
      • TestRepositoryCircularDependencies.test_0020_create_repository_dependencies()
      • TestRepositoryCircularDependencies.test_0025_create_dependency_on_filtering()
      • TestRepositoryCircularDependencies.test_0030_verify_repository_dependencies()
      • TestRepositoryCircularDependencies.test_0035_verify_repository_metadata()
      • TestRepositoryCircularDependencies.host
      • TestRepositoryCircularDependencies.port
      • TestRepositoryCircularDependencies.url
      • TestRepositoryCircularDependencies.keepOutdir
      • TestRepositoryCircularDependencies.test_data_resolver
  • tool_shed.test.functional.test_0090_tool_search module
    • TestRepositoryCircularDependenciesAgain
      • TestRepositoryCircularDependenciesAgain.test_0000_initiate_users()
      • TestRepositoryCircularDependenciesAgain.test_0005_create_bwa_base_repository()
      • TestRepositoryCircularDependenciesAgain.test_0010_create_bwa_color_repository()
      • TestRepositoryCircularDependenciesAgain.test_0020_create_emboss_repository()
      • TestRepositoryCircularDependenciesAgain.test_0025_create_filtering_repository()
      • TestRepositoryCircularDependenciesAgain.test_0030_create_freebayes_repository()
      • TestRepositoryCircularDependenciesAgain.test_0035_create_and_upload_dependency_definitions()
      • TestRepositoryCircularDependenciesAgain.test_0040_verify_repository_dependencies()
      • TestRepositoryCircularDependenciesAgain.host
      • TestRepositoryCircularDependenciesAgain.port
      • TestRepositoryCircularDependenciesAgain.url
      • TestRepositoryCircularDependenciesAgain.keepOutdir
      • TestRepositoryCircularDependenciesAgain.test_data_resolver
  • tool_shed.test.functional.test_0100_complex_repository_dependencies module
    • TestComplexRepositoryDependencies
      • TestComplexRepositoryDependencies.test_0000_initiate_users()
      • TestComplexRepositoryDependencies.test_0005_create_bwa_package_repository()
      • TestComplexRepositoryDependencies.test_0010_create_bwa_base_repository()
      • TestComplexRepositoryDependencies.test_0015_generate_complex_repository_dependency_invalid_shed_url()
      • TestComplexRepositoryDependencies.test_0020_generate_complex_repository_dependency_invalid_repository_name()
      • TestComplexRepositoryDependencies.test_0025_generate_complex_repository_dependency_invalid_owner_name()
      • TestComplexRepositoryDependencies.test_0030_generate_complex_repository_dependency_invalid_changeset_revision()
      • TestComplexRepositoryDependencies.test_0035_generate_complex_repository_dependency()
      • TestComplexRepositoryDependencies.test_0040_generate_tool_dependency()
      • TestComplexRepositoryDependencies.host
      • TestComplexRepositoryDependencies.port
      • TestComplexRepositoryDependencies.url
      • TestComplexRepositoryDependencies.keepOutdir
      • TestComplexRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_0110_invalid_simple_repository_dependencies module
    • TestBasicRepositoryDependencies
      • TestBasicRepositoryDependencies.test_0000_initiate_users()
      • TestBasicRepositoryDependencies.test_0005_create_category()
      • TestBasicRepositoryDependencies.test_0010_create_emboss_datatypes_repository_and_upload_tarball()
      • TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()
      • TestBasicRepositoryDependencies.test_0025_generate_repository_dependency_with_invalid_url()
      • TestBasicRepositoryDependencies.test_0030_generate_repository_dependency_with_invalid_name()
      • TestBasicRepositoryDependencies.test_0035_generate_repository_dependency_with_invalid_owner()
      • TestBasicRepositoryDependencies.test_0040_generate_repository_dependency_with_invalid_changeset_revision()
      • TestBasicRepositoryDependencies.host
      • TestBasicRepositoryDependencies.port
      • TestBasicRepositoryDependencies.url
      • TestBasicRepositoryDependencies.keepOutdir
      • TestBasicRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_0120_simple_repository_dependency_multiple_owners module
    • tool_repository_long_description
    • TestRepositoryMultipleOwners
      • TestRepositoryMultipleOwners.test_0000_initiate_users()
      • TestRepositoryMultipleOwners.test_0005_create_datatypes_repository()
      • TestRepositoryMultipleOwners.test_0010_verify_datatypes_repository()
      • TestRepositoryMultipleOwners.test_0015_create_tool_repository()
      • TestRepositoryMultipleOwners.test_0020_verify_tool_repository()
      • TestRepositoryMultipleOwners.test_0025_create_repository_dependency()
      • TestRepositoryMultipleOwners.test_0040_verify_repository_dependency()
      • TestRepositoryMultipleOwners.host
      • TestRepositoryMultipleOwners.port
      • TestRepositoryMultipleOwners.url
      • TestRepositoryMultipleOwners.keepOutdir
      • TestRepositoryMultipleOwners.test_data_resolver
  • tool_shed.test.functional.test_0130_datatype_converters module
  • tool_shed.test.functional.test_0140_tool_help_images module
    • category_description
    • TestToolHelpImages
      • TestToolHelpImages.test_0000_initiate_users()
      • TestToolHelpImages.test_0005_create_htseq_count_repository()
      • TestToolHelpImages.test_0010_load_tool_page()
      • TestToolHelpImages.host
      • TestToolHelpImages.port
      • TestToolHelpImages.url
      • TestToolHelpImages.keepOutdir
      • TestToolHelpImages.test_data_resolver
  • tool_shed.test.functional.test_0150_prior_installation_required module
    • category_description
    • TestSimplePriorInstallation
      • TestSimplePriorInstallation.test_0000_initiate_users()
      • TestSimplePriorInstallation.test_0005_create_convert_repository()
      • TestSimplePriorInstallation.test_0010_create_column_repository()
      • TestSimplePriorInstallation.test_0015_create_repository_dependency()
      • TestSimplePriorInstallation.test_0020_verify_repository_dependency()
      • TestSimplePriorInstallation.host
      • TestSimplePriorInstallation.port
      • TestSimplePriorInstallation.url
      • TestSimplePriorInstallation.keepOutdir
      • TestSimplePriorInstallation.test_data_resolver
  • tool_shed.test.functional.test_0160_circular_prior_installation_required module
    • category_description
    • TestSimplePriorInstallation
      • TestSimplePriorInstallation.test_0000_initiate_users()
      • TestSimplePriorInstallation.test_0005_create_convert_repository()
      • TestSimplePriorInstallation.test_0010_create_column_repository()
      • TestSimplePriorInstallation.test_0015_create_filtering_repository()
      • TestSimplePriorInstallation.test_0020_create_repository_dependency()
      • TestSimplePriorInstallation.test_0025_verify_repository_dependency()
      • TestSimplePriorInstallation.host
      • TestSimplePriorInstallation.port
      • TestSimplePriorInstallation.url
      • TestSimplePriorInstallation.keepOutdir
      • TestSimplePriorInstallation.test_data_resolver
  • tool_shed.test.functional.test_0170_complex_prior_installation_required module
    • category_description
    • TestComplexPriorInstallation
      • TestComplexPriorInstallation.test_0000_initiate_users()
      • TestComplexPriorInstallation.test_0005_create_matplotlib_repository()
      • TestComplexPriorInstallation.test_0010_create_numpy_repository()
      • TestComplexPriorInstallation.test_0015_create_complex_repository_dependency()
      • TestComplexPriorInstallation.test_0020_verify_generated_dependency()
      • TestComplexPriorInstallation.host
      • TestComplexPriorInstallation.port
      • TestComplexPriorInstallation.url
      • TestComplexPriorInstallation.keepOutdir
      • TestComplexPriorInstallation.test_data_resolver
  • tool_shed.test.functional.test_0300_reset_all_metadata module
    • TestResetAllRepositoryMetadata
      • TestResetAllRepositoryMetadata.test_0000_initiate_users()
      • TestResetAllRepositoryMetadata.test_0005_create_filtering_repository()
      • TestResetAllRepositoryMetadata.test_0010_create_freebayes_repository()
      • TestResetAllRepositoryMetadata.test_0015_create_datatypes_0020_repository()
      • TestResetAllRepositoryMetadata.test_0020_create_emboss_0020_repository()
      • TestResetAllRepositoryMetadata.test_0025_create_emboss_datatypes_0030_repository()
      • TestResetAllRepositoryMetadata.test_0030_create_emboss_5_repository()
      • TestResetAllRepositoryMetadata.test_0035_create_emboss_6_repository()
      • TestResetAllRepositoryMetadata.test_0040_create_emboss_0030_repository()
      • TestResetAllRepositoryMetadata.test_0045_create_repository_dependencies_for_0030()
      • TestResetAllRepositoryMetadata.test_0050_create_freebayes_repository()
      • TestResetAllRepositoryMetadata.test_0055_create_filtering_repository()
      • TestResetAllRepositoryMetadata.test_0060_create_dependency_structure()
      • TestResetAllRepositoryMetadata.test_0065_create_convert_repository()
      • TestResetAllRepositoryMetadata.test_0070_create_column_repository()
      • TestResetAllRepositoryMetadata.test_0075_create_emboss_datatypes_repository()
      • TestResetAllRepositoryMetadata.test_0080_create_emboss_repository()
      • TestResetAllRepositoryMetadata.test_0085_create_filtering_repository()
      • TestResetAllRepositoryMetadata.test_0090_create_freebayes_repository()
      • TestResetAllRepositoryMetadata.test_0095_create_bismark_repository()
      • TestResetAllRepositoryMetadata.test_0100_create_and_upload_dependency_definitions()
      • TestResetAllRepositoryMetadata.test_0110_reset_metadata_on_all_repositories()
      • TestResetAllRepositoryMetadata.host
      • TestResetAllRepositoryMetadata.port
      • TestResetAllRepositoryMetadata.url
      • TestResetAllRepositoryMetadata.keepOutdir
      • TestResetAllRepositoryMetadata.test_data_resolver
  • tool_shed.test.functional.test_0310_hg_api_features module
    • category_description
    • TestHgWebFeatures
      • TestHgWebFeatures.test_0000_initiate_users()
      • TestHgWebFeatures.test_0005_create_filtering_repository()
      • TestHgWebFeatures.test_0010_clone()
      • TestHgWebFeatures.host
      • TestHgWebFeatures.port
      • TestHgWebFeatures.url
      • TestHgWebFeatures.keepOutdir
      • TestHgWebFeatures.test_data_resolver
  • tool_shed.test.functional.test_0400_repository_component_reviews module
  • tool_shed.test.functional.test_0410_repository_component_review_access_control module
  • tool_shed.test.functional.test_0420_citable_urls_for_repositories module
    • first_changeset_hash
    • TestRepositoryCitableURLs
      • TestRepositoryCitableURLs.test_0000_initiate_users()
      • TestRepositoryCitableURLs.test_0005_create_repository()
      • TestRepositoryCitableURLs.test_0010_upload_new_file_to_repository()
      • TestRepositoryCitableURLs.test_0015_load_user_view_page()
      • TestRepositoryCitableURLs.test_0020_load_repository_view_page()
      • TestRepositoryCitableURLs.test_0025_load_view_page_for_previous_revision()
      • TestRepositoryCitableURLs.test_0030_load_sharable_url_with_invalid_changeset_revision()
      • TestRepositoryCitableURLs.test_0035_load_sharable_url_with_invalid_repository_name()
      • TestRepositoryCitableURLs.test_0040_load_sharable_url_with_invalid_owner()
      • TestRepositoryCitableURLs.host
      • TestRepositoryCitableURLs.port
      • TestRepositoryCitableURLs.url
      • TestRepositoryCitableURLs.keepOutdir
      • TestRepositoryCitableURLs.test_data_resolver
  • tool_shed.test.functional.test_0430_browse_utilities module
    • freebayes_repository_long_description
    • TestToolShedBrowseUtilities
      • TestToolShedBrowseUtilities.test_0000_initiate_users()
      • TestToolShedBrowseUtilities.test_0010_create_emboss_repository()
      • TestToolShedBrowseUtilities.test_0020_create_tool_dependency_repository()
      • TestToolShedBrowseUtilities.test_0030_browse_tools()
      • TestToolShedBrowseUtilities.test_0040_browse_tool_dependencies()
      • TestToolShedBrowseUtilities.host
      • TestToolShedBrowseUtilities.port
      • TestToolShedBrowseUtilities.url
      • TestToolShedBrowseUtilities.keepOutdir
      • TestToolShedBrowseUtilities.test_data_resolver
  • tool_shed.test.functional.test_0440_deleting_dependency_definitions module
    • bwa_tool_dependency_repository_long_description
    • TestDeletedDependencies
      • TestDeletedDependencies.test_0000_initiate_users()
      • TestDeletedDependencies.test_0005_create_column_maker_repository()
      • TestDeletedDependencies.test_0010_create_convert_chars_repository()
      • TestDeletedDependencies.test_0015_create_dependency_on_convert_chars()
      • TestDeletedDependencies.test_0020_verify_dependency_metadata()
      • TestDeletedDependencies.test_0025_delete_repository_dependency()
      • TestDeletedDependencies.test_0030_create_bwa_package_repository()
      • TestDeletedDependencies.test_0035_create_bwa_base_repository()
      • TestDeletedDependencies.test_0040_create_dependency_on_bwa_package_repository()
      • TestDeletedDependencies.test_0045_verify_dependency_metadata()
      • TestDeletedDependencies.test_0050_delete_complex_repository_dependency()
      • TestDeletedDependencies.test_0055_create_bwa_tool_dependency_repository()
      • TestDeletedDependencies.test_0060_delete_bwa_tool_dependency_definition()
      • TestDeletedDependencies.test_0065_reupload_bwa_tool_dependency_definition()
      • TestDeletedDependencies.host
      • TestDeletedDependencies.port
      • TestDeletedDependencies.url
      • TestDeletedDependencies.keepOutdir
      • TestDeletedDependencies.test_data_resolver
  • tool_shed.test.functional.test_0460_upload_to_repository module
    • bwa_repository_long_description
    • TestAutomaticDependencyRevision
      • TestAutomaticDependencyRevision.test_0000_initiate_users()
      • TestAutomaticDependencyRevision.test_0005_create_datatypes_repository()
      • TestAutomaticDependencyRevision.test_0010_create_bwa_package_repository()
      • TestAutomaticDependencyRevision.test_0015_create_tool_dependency_repositories()
      • TestAutomaticDependencyRevision.test_0020_populate_complex_dependency_test_1_0460()
      • TestAutomaticDependencyRevision.test_0025_populate_complex_dependency_test_2_0460()
      • TestAutomaticDependencyRevision.test_0030_populate_complex_dependency_test_3_0460()
      • TestAutomaticDependencyRevision.test_0035_create_repositories_for_url_upload()
      • TestAutomaticDependencyRevision.test_0050_create_repositories_for_simple_dependencies()
      • TestAutomaticDependencyRevision.test_0055_populate_repository_dependency_test_1_0460()
      • TestAutomaticDependencyRevision.test_0060_populate_repository_dependency_test_2_0460()
      • TestAutomaticDependencyRevision.test_0065_populate_repository_dependency_test_3_0460()
      • TestAutomaticDependencyRevision.test_0070_create_repositories_for_url_upload()
      • TestAutomaticDependencyRevision.host
      • TestAutomaticDependencyRevision.port
      • TestAutomaticDependencyRevision.url
      • TestAutomaticDependencyRevision.keepOutdir
      • TestAutomaticDependencyRevision.test_data_resolver
  • tool_shed.test.functional.test_0470_tool_dependency_repository_type module
    • emboss_repository_long_description
    • TestEnvironmentInheritance
      • TestEnvironmentInheritance.test_0000_initiate_users_and_category()
      • TestEnvironmentInheritance.test_0005_create_libx11_repository()
      • TestEnvironmentInheritance.test_0010_create_emboss_5_0_0_repository()
      • TestEnvironmentInheritance.test_0015_create_emboss_5_repository()
      • TestEnvironmentInheritance.test_0020_upload_updated_tool_dependency_to_package_x11()
      • TestEnvironmentInheritance.test_0025_upload_updated_tool_dependency_to_package_emboss()
      • TestEnvironmentInheritance.test_0030_upload_updated_tool_dependency_to_emboss_5_repository()
      • TestEnvironmentInheritance.test_0035_modify_package_x11_repository_type()
      • TestEnvironmentInheritance.test_0040_modify_package_emboss_repository_type()
      • TestEnvironmentInheritance.test_0045_reset_repository_metadata()
      • TestEnvironmentInheritance.test_0050_reset_emboss_5_metadata()
      • TestEnvironmentInheritance.host
      • TestEnvironmentInheritance.port
      • TestEnvironmentInheritance.url
      • TestEnvironmentInheritance.keepOutdir
      • TestEnvironmentInheritance.test_data_resolver
  • tool_shed.test.functional.test_0480_tool_dependency_xml_verification module
    • repository_long_description
    • TestDependencyDefinitionValidation
      • TestDependencyDefinitionValidation.test_0000_initiate_users_and_category()
      • TestDependencyDefinitionValidation.test_0005_create_tool_dependency_repository()
      • TestDependencyDefinitionValidation.test_0010_populate_tool_dependency_repository()
      • TestDependencyDefinitionValidation.host
      • TestDependencyDefinitionValidation.port
      • TestDependencyDefinitionValidation.url
      • TestDependencyDefinitionValidation.keepOutdir
      • TestDependencyDefinitionValidation.test_data_resolver
  • tool_shed.test.functional.test_0530_repository_admin_feature module
    • category_description
    • TestRepositoryAdminRole
      • TestRepositoryAdminRole.test_0000_initiate_users()
      • TestRepositoryAdminRole.test_0005_create_filtering_repository()
      • TestRepositoryAdminRole.test_0010_verify_repository_admin_role_exists()
      • TestRepositoryAdminRole.test_0015_verify_repository_role_association()
      • TestRepositoryAdminRole.test_0020_rename_repository()
      • TestRepositoryAdminRole.test_0030_verify_access_denied()
      • TestRepositoryAdminRole.test_0035_grant_admin_role()
      • TestRepositoryAdminRole.test_0040_rename_repository_as_repository_admin()
      • TestRepositoryAdminRole.host
      • TestRepositoryAdminRole.port
      • TestRepositoryAdminRole.url
      • TestRepositoryAdminRole.keepOutdir
      • TestRepositoryAdminRole.test_data_resolver
  • tool_shed.test.functional.test_0540_get_all_metadata_from_api module
  • tool_shed.test.functional.test_0550_metadata_updated_dependencies module
    • category_description
    • TestGetUpdatedMetadata
      • TestGetUpdatedMetadata.test_0000_initiate_users()
      • TestGetUpdatedMetadata.test_0005_freebayes_repository()
      • TestGetUpdatedMetadata.test_0010_create_samtools_repository()
      • TestGetUpdatedMetadata.test_0015_create_filtering_repository()
      • TestGetUpdatedMetadata.test_0020_check_repository_dependency()
      • TestGetUpdatedMetadata.test_0025_update_dependent_repositories()
      • TestGetUpdatedMetadata.host
      • TestGetUpdatedMetadata.port
      • TestGetUpdatedMetadata.url
      • TestGetUpdatedMetadata.keepOutdir
      • TestGetUpdatedMetadata.test_data_resolver
  • tool_shed.test.functional.test_1000_install_basic_repository module
    • TestBasicToolShedFeatures
      • TestBasicToolShedFeatures.requires_galaxy
      • TestBasicToolShedFeatures.test_0000_initiate_users()
      • TestBasicToolShedFeatures.test_0005_ensure_repositories_and_categories_exist()
      • TestBasicToolShedFeatures.test_0010_browse_tool_sheds()
      • TestBasicToolShedFeatures.test_0015_browse_test_0000_category()
      • TestBasicToolShedFeatures.test_0020_preview_filtering_repository()
      • TestBasicToolShedFeatures.test_0025_install_filtering_repository()
      • TestBasicToolShedFeatures.test_0030_install_filtering_repository_again()
      • TestBasicToolShedFeatures.test_0035_verify_installed_repository_metadata()
      • TestBasicToolShedFeatures.host
      • TestBasicToolShedFeatures.port
      • TestBasicToolShedFeatures.url
      • TestBasicToolShedFeatures.keepOutdir
      • TestBasicToolShedFeatures.test_data_resolver
  • tool_shed.test.functional.test_1010_install_repository_with_tool_dependencies module
    • TestToolWithToolDependencies
      • TestToolWithToolDependencies.requires_galaxy
      • TestToolWithToolDependencies.test_0000_initiate_users()
      • TestToolWithToolDependencies.test_0005_ensure_repositories_and_categories_exist()
      • TestToolWithToolDependencies.test_0010_browse_tool_shed()
      • TestToolWithToolDependencies.test_0015_install_freebayes_repository()
      • TestToolWithToolDependencies.test_0020_verify_installed_repository_metadata()
      • TestToolWithToolDependencies.test_0025_verify_sample_files()
      • TestToolWithToolDependencies.host
      • TestToolWithToolDependencies.port
      • TestToolWithToolDependencies.url
      • TestToolWithToolDependencies.keepOutdir
      • TestToolWithToolDependencies.test_data_resolver
  • tool_shed.test.functional.test_1020_install_repository_with_repository_dependencies module
    • TestToolWithRepositoryDependencies
      • TestToolWithRepositoryDependencies.requires_galaxy
      • TestToolWithRepositoryDependencies.test_0000_initiate_users()
      • TestToolWithRepositoryDependencies.test_0005_ensure_repositories_and_categories_exist()
      • TestToolWithRepositoryDependencies.test_0010_browse_tool_shed()
      • TestToolWithRepositoryDependencies.test_0015_install_emboss_repository()
      • TestToolWithRepositoryDependencies.test_0020_verify_installed_repository_metadata()
      • TestToolWithRepositoryDependencies.test_0025_deactivate_datatypes_repository()
      • TestToolWithRepositoryDependencies.test_0030_reactivate_datatypes_repository()
      • TestToolWithRepositoryDependencies.host
      • TestToolWithRepositoryDependencies.port
      • TestToolWithRepositoryDependencies.url
      • TestToolWithRepositoryDependencies.keepOutdir
      • TestToolWithRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_1030_install_repository_with_dependency_revisions module
    • TestRepositoryWithDependencyRevisions
      • TestRepositoryWithDependencyRevisions.requires_galaxy
      • TestRepositoryWithDependencyRevisions.test_0000_initiate_users()
      • TestRepositoryWithDependencyRevisions.test_0005_ensure_repositories_and_categories_exist()
      • TestRepositoryWithDependencyRevisions.test_0010_browse_tool_shed()
      • TestRepositoryWithDependencyRevisions.test_0015_install_emboss_repository()
      • TestRepositoryWithDependencyRevisions.test_0025_verify_installed_repository_metadata()
      • TestRepositoryWithDependencyRevisions.host
      • TestRepositoryWithDependencyRevisions.port
      • TestRepositoryWithDependencyRevisions.url
      • TestRepositoryWithDependencyRevisions.keepOutdir
      • TestRepositoryWithDependencyRevisions.test_data_resolver
  • tool_shed.test.functional.test_1040_install_repository_basic_circular_dependencies module
    • TestInstallingCircularDependencies
      • TestInstallingCircularDependencies.requires_galaxy
      • TestInstallingCircularDependencies.test_0000_initiate_users()
      • TestInstallingCircularDependencies.test_0005_create_freebayes_repository()
      • TestInstallingCircularDependencies.test_0015_create_filtering_repository()
      • TestInstallingCircularDependencies.test_0020_create_repository_dependencies()
      • TestInstallingCircularDependencies.test_0025_install_freebayes_repository()
      • TestInstallingCircularDependencies.test_0030_uninstall_filtering_repository()
      • TestInstallingCircularDependencies.test_0035_reactivate_filtering_repository()
      • TestInstallingCircularDependencies.test_0040_uninstall_freebayes_repository()
      • TestInstallingCircularDependencies.test_0045_deactivate_filtering_repository()
      • TestInstallingCircularDependencies.host
      • TestInstallingCircularDependencies.port
      • TestInstallingCircularDependencies.url
      • TestInstallingCircularDependencies.keepOutdir
      • TestInstallingCircularDependencies.test_data_resolver
  • tool_shed.test.functional.test_1050_circular_dependencies_4_levels module
    • TestInstallRepositoryCircularDependencies
      • TestInstallRepositoryCircularDependencies.requires_galaxy
      • TestInstallRepositoryCircularDependencies.test_0000_initiate_users()
      • TestInstallRepositoryCircularDependencies.test_0005_create_convert_repository()
      • TestInstallRepositoryCircularDependencies.test_0010_create_column_repository()
      • TestInstallRepositoryCircularDependencies.test_0015_create_emboss_datatypes_repository()
      • TestInstallRepositoryCircularDependencies.test_0020_create_emboss_repository()
      • TestInstallRepositoryCircularDependencies.test_0025_create_filtering_repository()
      • TestInstallRepositoryCircularDependencies.test_0030_create_freebayes_repository()
      • TestInstallRepositoryCircularDependencies.test_0035_create_bismark_repository()
      • TestInstallRepositoryCircularDependencies.test_0040_create_and_upload_dependency_definitions()
      • TestInstallRepositoryCircularDependencies.test_0045_verify_repository_dependencies()
      • TestInstallRepositoryCircularDependencies.test_0050_verify_tool_dependencies()
      • TestInstallRepositoryCircularDependencies.test_0055_install_column_repository()
      • TestInstallRepositoryCircularDependencies.test_0060_install_emboss_repository()
      • TestInstallRepositoryCircularDependencies.test_0065_deactivate_bismark_repository()
      • TestInstallRepositoryCircularDependencies.test_0070_uninstall_emboss_repository()
      • TestInstallRepositoryCircularDependencies.test_0075_install_freebayes_repository()
      • TestInstallRepositoryCircularDependencies.host
      • TestInstallRepositoryCircularDependencies.port
      • TestInstallRepositoryCircularDependencies.url
      • TestInstallRepositoryCircularDependencies.keepOutdir
      • TestInstallRepositoryCircularDependencies.test_data_resolver
  • tool_shed.test.functional.test_1070_invalid_tool module
    • TestFreebayesRepository
      • TestFreebayesRepository.requires_galaxy
      • TestFreebayesRepository.test_0000_create_or_login_admin_user()
      • TestFreebayesRepository.test_0005_ensure_existence_of_repository_and_category()
      • TestFreebayesRepository.test_0010_browse_tool_shed()
      • TestFreebayesRepository.test_0015_install_freebayes_repository()
      • TestFreebayesRepository.host
      • TestFreebayesRepository.port
      • TestFreebayesRepository.url
      • TestFreebayesRepository.keepOutdir
      • TestFreebayesRepository.test_data_resolver
  • tool_shed.test.functional.test_1080_advanced_circular_dependency_installation module
    • TestRepositoryDependencies
      • TestRepositoryDependencies.requires_galaxy
      • TestRepositoryDependencies.test_0000_create_or_login_admin_user()
      • TestRepositoryDependencies.test_0005_create_and_populate_column_repository()
      • TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()
      • TestRepositoryDependencies.test_0015_upload_dependency_xml_if_needed()
      • TestRepositoryDependencies.test_0020_install_convert_repository()
      • TestRepositoryDependencies.test_0025_install_column_repository()
      • TestRepositoryDependencies.test_0030_deactivate_convert_repository()
      • TestRepositoryDependencies.test_0035_reactivate_convert_repository()
      • TestRepositoryDependencies.test_0040_deactivate_column_repository()
      • TestRepositoryDependencies.test_0045_deactivate_convert_repository()
      • TestRepositoryDependencies.test_0050_reactivate_column_repository()
      • TestRepositoryDependencies.test_0055_reactivate_convert_repository()
      • TestRepositoryDependencies.test_0060_uninstall_column_repository()
      • TestRepositoryDependencies.test_0065_reinstall_column_repository()
      • TestRepositoryDependencies.test_0070_uninstall_convert_repository()
      • TestRepositoryDependencies.test_0075_uninstall_column_repository()
      • TestRepositoryDependencies.test_0080_reinstall_convert_repository()
      • TestRepositoryDependencies.host
      • TestRepositoryDependencies.port
      • TestRepositoryDependencies.url
      • TestRepositoryDependencies.keepOutdir
      • TestRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_1090_repository_dependency_handling module
    • TestRepositoryDependencies
      • TestRepositoryDependencies.requires_galaxy
      • TestRepositoryDependencies.test_0000_create_or_login_admin_user()
      • TestRepositoryDependencies.test_0005_create_and_populate_column_repository()
      • TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()
      • TestRepositoryDependencies.test_0015_create_and_upload_dependency_files()
      • TestRepositoryDependencies.test_0020_install_repositories()
      • TestRepositoryDependencies.test_0025_uninstall_column_repository()
      • TestRepositoryDependencies.test_0030_uninstall_convert_repository()
      • TestRepositoryDependencies.test_0035_reinstall_column_repository()
      • TestRepositoryDependencies.test_0040_reinstall_convert_repository()
      • TestRepositoryDependencies.host
      • TestRepositoryDependencies.port
      • TestRepositoryDependencies.url
      • TestRepositoryDependencies.keepOutdir
      • TestRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_1100_install_updated_repository_dependencies module
    • TestRepositoryDependencies
      • TestRepositoryDependencies.requires_galaxy
      • TestRepositoryDependencies.test_0000_create_or_login_admin_user()
      • TestRepositoryDependencies.test_0005_create_and_populate_column_repository()
      • TestRepositoryDependencies.test_0010_create_and_populate_convert_repository()
      • TestRepositoryDependencies.test_0015_install_and_uninstall_column_repository()
      • TestRepositoryDependencies.test_0020_upload_dependency_xml()
      • TestRepositoryDependencies.test_0025_verify_repository_dependency()
      • TestRepositoryDependencies.test_0030_reinstall_column_repository()
      • TestRepositoryDependencies.host
      • TestRepositoryDependencies.port
      • TestRepositoryDependencies.url
      • TestRepositoryDependencies.keepOutdir
      • TestRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_1120_install_repository_with_complex_dependencies module
    • TestInstallingComplexRepositoryDependencies
      • TestInstallingComplexRepositoryDependencies.requires_galaxy
      • TestInstallingComplexRepositoryDependencies.test_0000_initiate_users()
      • TestInstallingComplexRepositoryDependencies.test_0005_create_bwa_package_repository()
      • TestInstallingComplexRepositoryDependencies.test_0010_create_bwa_base_repository()
      • TestInstallingComplexRepositoryDependencies.test_0015_generate_complex_repository_dependency_invalid_shed_url()
      • TestInstallingComplexRepositoryDependencies.test_0020_generate_complex_repository_dependency_invalid_repository_name()
      • TestInstallingComplexRepositoryDependencies.test_0025_generate_complex_repository_dependency_invalid_owner_name()
      • TestInstallingComplexRepositoryDependencies.test_0030_generate_complex_repository_dependency_invalid_changeset_revision()
      • TestInstallingComplexRepositoryDependencies.test_0035_generate_valid_complex_repository_dependency()
      • TestInstallingComplexRepositoryDependencies.test_0040_update_tool_repository()
      • TestInstallingComplexRepositoryDependencies.test_0045_install_base_repository()
      • TestInstallingComplexRepositoryDependencies.test_0050_verify_installed_repositories()
      • TestInstallingComplexRepositoryDependencies.host
      • TestInstallingComplexRepositoryDependencies.port
      • TestInstallingComplexRepositoryDependencies.url
      • TestInstallingComplexRepositoryDependencies.keepOutdir
      • TestInstallingComplexRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_1130_install_repository_with_invalid_repository_dependency module
    • TestBasicRepositoryDependencies
      • TestBasicRepositoryDependencies.requires_galaxy
      • TestBasicRepositoryDependencies.test_0000_initiate_users()
      • TestBasicRepositoryDependencies.test_0005_create_category()
      • TestBasicRepositoryDependencies.test_0010_create_emboss_dependendent_column_maker_repository_and_upload_tarball()
      • TestBasicRepositoryDependencies.test_0020_create_emboss_5_repository_and_upload_files()
      • TestBasicRepositoryDependencies.test_0025_generate_repository_dependency_with_invalid_url()
      • TestBasicRepositoryDependencies.test_0030_generate_repository_dependency_with_invalid_name()
      • TestBasicRepositoryDependencies.test_0035_generate_repository_dependency_with_invalid_owner()
      • TestBasicRepositoryDependencies.test_0040_generate_repository_dependency_with_invalid_changeset_revision()
      • TestBasicRepositoryDependencies.test_0045_install_repository_with_invalid_repository_dependency()
      • TestBasicRepositoryDependencies.host
      • TestBasicRepositoryDependencies.port
      • TestBasicRepositoryDependencies.url
      • TestBasicRepositoryDependencies.keepOutdir
      • TestBasicRepositoryDependencies.test_data_resolver
  • tool_shed.test.functional.test_1140_simple_repository_dependency_multiple_owners module
    • tool_repository_long_description
    • TestInstallRepositoryMultipleOwners
      • TestInstallRepositoryMultipleOwners.requires_galaxy
      • TestInstallRepositoryMultipleOwners.test_0000_initiate_users()
      • TestInstallRepositoryMultipleOwners.test_0005_create_datatypes_repository()
      • TestInstallRepositoryMultipleOwners.test_0010_verify_datatypes_repository()
      • TestInstallRepositoryMultipleOwners.test_0015_create_tool_repository()
      • TestInstallRepositoryMultipleOwners.test_0020_verify_tool_repository()
      • TestInstallRepositoryMultipleOwners.test_0025_create_repository_dependency()
      • TestInstallRepositoryMultipleOwners.test_0040_verify_repository_dependency()
      • TestInstallRepositoryMultipleOwners.test_0045_install_blastxml_to_top_descr()
      • TestInstallRepositoryMultipleOwners.test_0050_verify_repository_installation()
      • TestInstallRepositoryMultipleOwners.host
      • TestInstallRepositoryMultipleOwners.port
      • TestInstallRepositoryMultipleOwners.url
      • TestInstallRepositoryMultipleOwners.keepOutdir
      • TestInstallRepositoryMultipleOwners.test_data_resolver
  • tool_shed.test.functional.test_1150_datatype_converters module
  • tool_shed.test.functional.test_1160_tool_help_images module
    • TestToolHelpImages
      • TestToolHelpImages.requires_galaxy
      • TestToolHelpImages.test_0000_initiate_users()
      • TestToolHelpImages.test_0005_create_htseq_count_repository()
      • TestToolHelpImages.test_0010_load_tool_page()
      • TestToolHelpImages.host
      • TestToolHelpImages.port
      • TestToolHelpImages.url
      • TestToolHelpImages.keepOutdir
      • TestToolHelpImages.test_data_resolver
  • tool_shed.test.functional.test_1170_prior_installation_required module
    • category_description
    • TestSimplePriorInstallation
      • TestSimplePriorInstallation.requires_galaxy
      • TestSimplePriorInstallation.test_0000_initiate_users()
      • TestSimplePriorInstallation.test_0005_create_convert_repository()
      • TestSimplePriorInstallation.test_0010_create_column_repository()
      • TestSimplePriorInstallation.test_0015_create_repository_dependency()
      • TestSimplePriorInstallation.test_0020_verify_repository_dependency()
      • TestSimplePriorInstallation.test_0025_install_column_repository()
      • TestSimplePriorInstallation.test_0030_verify_installation_order()
      • TestSimplePriorInstallation.host
      • TestSimplePriorInstallation.port
      • TestSimplePriorInstallation.url
      • TestSimplePriorInstallation.keepOutdir
      • TestSimplePriorInstallation.test_data_resolver
  • tool_shed.test.functional.test_1180_circular_prior_installation_required module
    • category_description
    • TestSimplePriorInstallation
      • TestSimplePriorInstallation.requires_galaxy
      • TestSimplePriorInstallation.test_0000_initiate_users()
      • TestSimplePriorInstallation.test_0005_create_convert_repository()
      • TestSimplePriorInstallation.test_0010_create_column_repository()
      • TestSimplePriorInstallation.test_0015_create_filtering_repository()
      • TestSimplePriorInstallation.test_0020_create_repository_dependency()
      • TestSimplePriorInstallation.test_0025_verify_repository_dependency()
      • TestSimplePriorInstallation.test_0030_install_filtering_repository()
      • TestSimplePriorInstallation.test_0035_verify_installation_order()
      • TestSimplePriorInstallation.test_0040_deactivate_all_repositories()
      • TestSimplePriorInstallation.test_0045_reactivate_filter_repository()
      • TestSimplePriorInstallation.test_0050_verify_reinstallation_order()
      • TestSimplePriorInstallation.host
      • TestSimplePriorInstallation.port
      • TestSimplePriorInstallation.url
      • TestSimplePriorInstallation.keepOutdir
      • TestSimplePriorInstallation.test_data_resolver
  • tool_shed.test.functional.test_1190_complex_prior_installation_required module
    • category_description
    • TestComplexPriorInstallation
      • TestComplexPriorInstallation.requires_galaxy
      • TestComplexPriorInstallation.test_0000_initiate_users()
      • TestComplexPriorInstallation.test_0005_create_matplotlib_repository()
      • TestComplexPriorInstallation.test_0010_create_numpy_repository()
      • TestComplexPriorInstallation.test_0015_create_complex_repository_dependency()
      • TestComplexPriorInstallation.test_0020_verify_generated_dependency()
      • TestComplexPriorInstallation.test_0025_install_matplotlib_repository()
      • TestComplexPriorInstallation.test_0030_verify_installation_order()
      • TestComplexPriorInstallation.host
      • TestComplexPriorInstallation.port
      • TestComplexPriorInstallation.url
      • TestComplexPriorInstallation.keepOutdir
      • TestComplexPriorInstallation.test_data_resolver
  • tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository module
    • TestUninstallingAndReinstallingRepositories
      • TestUninstallingAndReinstallingRepositories.requires_galaxy
      • TestUninstallingAndReinstallingRepositories.test_0000_initiate_users()
      • TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()
      • TestUninstallingAndReinstallingRepositories.test_0010_install_filtering_repository()
      • TestUninstallingAndReinstallingRepositories.test_0015_uninstall_filtering_repository()
      • TestUninstallingAndReinstallingRepositories.test_0020_reinstall_filtering_repository()
      • TestUninstallingAndReinstallingRepositories.test_0025_deactivate_filtering_repository()
      • TestUninstallingAndReinstallingRepositories.test_0030_reactivate_filtering_repository()
      • TestUninstallingAndReinstallingRepositories.host
      • TestUninstallingAndReinstallingRepositories.port
      • TestUninstallingAndReinstallingRepositories.url
      • TestUninstallingAndReinstallingRepositories.keepOutdir
      • TestUninstallingAndReinstallingRepositories.test_data_resolver
  • tool_shed.test.functional.test_1210_uninstall_reinstall_repository_with_tool_dependencies module
    • TestUninstallingAndReinstallingRepositories
      • TestUninstallingAndReinstallingRepositories.requires_galaxy
      • TestUninstallingAndReinstallingRepositories.test_0000_initiate_users()
      • TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()
      • TestUninstallingAndReinstallingRepositories.test_0010_install_freebayes_repository()
      • TestUninstallingAndReinstallingRepositories.test_0015_uninstall_freebayes_repository()
      • TestUninstallingAndReinstallingRepositories.test_0020_reinstall_freebayes_repository()
      • TestUninstallingAndReinstallingRepositories.test_0025_deactivate_freebayes_repository()
      • TestUninstallingAndReinstallingRepositories.test_0030_reactivate_freebayes_repository()
      • TestUninstallingAndReinstallingRepositories.host
      • TestUninstallingAndReinstallingRepositories.port
      • TestUninstallingAndReinstallingRepositories.url
      • TestUninstallingAndReinstallingRepositories.keepOutdir
      • TestUninstallingAndReinstallingRepositories.test_data_resolver
  • tool_shed.test.functional.test_1220_uninstall_reinstall_repository_with_repository_dependencies module
  • tool_shed.test.functional.test_1230_uninstall_reinstall_repository_with_dependency_revisions module
    • TestUninstallingAndReinstallingRepositories
      • TestUninstallingAndReinstallingRepositories.requires_galaxy
      • TestUninstallingAndReinstallingRepositories.test_0000_initiate_users()
      • TestUninstallingAndReinstallingRepositories.test_0005_ensure_repositories_and_categories_exist()
      • TestUninstallingAndReinstallingRepositories.test_0010_install_emboss_repository()
      • TestUninstallingAndReinstallingRepositories.test_0015_uninstall_emboss_repository()
      • TestUninstallingAndReinstallingRepositories.test_0020_reinstall_emboss_repository()
      • TestUninstallingAndReinstallingRepositories.test_0025_deactivate_emboss_repository()
      • TestUninstallingAndReinstallingRepositories.test_0030_reactivate_emboss_repository()
      • TestUninstallingAndReinstallingRepositories.host
      • TestUninstallingAndReinstallingRepositories.port
      • TestUninstallingAndReinstallingRepositories.url
      • TestUninstallingAndReinstallingRepositories.keepOutdir
      • TestUninstallingAndReinstallingRepositories.test_data_resolver
  • tool_shed.test.functional.test_1300_reset_all_metadata module
    • category_0060_name
    • TestResetInstalledRepositoryMetadata
      • TestResetInstalledRepositoryMetadata.requires_galaxy
      • TestResetInstalledRepositoryMetadata.test_0000_initiate_users()
      • TestResetInstalledRepositoryMetadata.test_0005_create_categories()
      • TestResetInstalledRepositoryMetadata.test_0010_create_repositories_from_0000_series()
      • TestResetInstalledRepositoryMetadata.test_0015_create_repositories_from_0010_series()
      • TestResetInstalledRepositoryMetadata.test_0020_create_repositories_from_0020_series()
      • TestResetInstalledRepositoryMetadata.test_0025_create_repositories_from_0030_series()
      • TestResetInstalledRepositoryMetadata.test_0030_create_repositories_from_0040_series()
      • TestResetInstalledRepositoryMetadata.test_0035_create_repositories_from_0050_series()
      • TestResetInstalledRepositoryMetadata.test_9900_install_all_missing_repositories()
      • TestResetInstalledRepositoryMetadata.test_9905_reset_metadata_on_all_repositories()
      • TestResetInstalledRepositoryMetadata.host
      • TestResetInstalledRepositoryMetadata.port
      • TestResetInstalledRepositoryMetadata.url
      • TestResetInstalledRepositoryMetadata.keepOutdir
      • TestResetInstalledRepositoryMetadata.test_data_resolver
  • tool_shed.test.functional.test_1410_update_manager module
    • category_description
    • TestUpdateManager
      • TestUpdateManager.requires_galaxy
      • TestUpdateManager.test_0000_initiate_users()
      • TestUpdateManager.test_0005_create_filtering_repository()
      • TestUpdateManager.test_0010_install_filtering_repository()
      • TestUpdateManager.test_0015_upload_readme_file()
      • TestUpdateManager.test_0020_check_for_displayed_update()
      • TestUpdateManager.host
      • TestUpdateManager.port
      • TestUpdateManager.url
      • TestUpdateManager.keepOutdir
      • TestUpdateManager.test_data_resolver
  • tool_shed.test.functional.test_1430_repair_installed_repository module
    • column_repository_long_description
    • TestRepairRepository
      • TestRepairRepository.requires_galaxy
      • TestRepairRepository.test_0000_initiate_users_and_category()
      • TestRepairRepository.test_0005_create_filter_repository()
      • TestRepairRepository.test_0010_create_column_repository()
      • TestRepairRepository.test_0015_create_repository_dependency()
      • TestRepairRepository.test_0020_install_column_repository()
      • TestRepairRepository.test_0025_uninstall_filter_repository()
      • TestRepairRepository.host
      • TestRepairRepository.port
      • TestRepairRepository.url
      • TestRepairRepository.keepOutdir
      • TestRepairRepository.test_data_resolver
  • tool_shed.test.functional.test_1450_installing_datatypes_sniffers module
  • tool_shed.test.functional.test_1460_data_managers module
    • data_manager_tar_file
    • TestDataManagers
      • TestDataManagers.requires_galaxy
      • TestDataManagers.test_0000_initiate_users_and_category()
      • TestDataManagers.test_0010_create_data_manager_repository()
      • TestDataManagers.test_0020_install_data_manager_repository()
      • TestDataManagers.test_0030_verify_data_manager_tool()
      • TestDataManagers.test_0040_verify_data_manager_data_table()
      • TestDataManagers.host
      • TestDataManagers.port
      • TestDataManagers.url
      • TestDataManagers.keepOutdir
      • TestDataManagers.test_data_resolver
  • tool_shed.test.functional.test_1470_updating_installed_repositories module
    • category_description
    • TestUpdateInstalledRepository
      • TestUpdateInstalledRepository.requires_galaxy
      • TestUpdateInstalledRepository.test_0000_initiate_users()
      • TestUpdateInstalledRepository.test_0005_create_filtering_repository()
      • TestUpdateInstalledRepository.test_0010_install_filtering_to_galaxy()
      • TestUpdateInstalledRepository.test_0015_update_repository()
      • TestUpdateInstalledRepository.test_0020_get_repository_updates()
      • TestUpdateInstalledRepository.test_0025_uninstall_repository()
      • TestUpdateInstalledRepository.test_0030_reinstall_repository()
      • TestUpdateInstalledRepository.test_0035_verify_absence_of_ghosts()
      • TestUpdateInstalledRepository.host
      • TestUpdateInstalledRepository.port
      • TestUpdateInstalledRepository.url
      • TestUpdateInstalledRepository.keepOutdir
      • TestUpdateInstalledRepository.test_data_resolver

Submodules

tool_shed.test.functional_tests module