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galaxy
galaxy.actions
galaxy.actions.admin
galaxy.actions.library
galaxy.app
galaxy.auth
galaxy.auth.providers
galaxy.auth.providers.alwaysreject
galaxy.auth.providers.ldap_ad
galaxy.auth.providers.localdb
galaxy.auth.providers.pam_auth
galaxy.auth.util
galaxy.authnz
galaxy.authnz.custos_authnz
galaxy.authnz.managers
galaxy.authnz.psa_authnz
galaxy.config
galaxy.config.script
galaxy.config_watchers
galaxy.containers
galaxy.containers.docker
galaxy.containers.docker_decorators
galaxy.containers.docker_model
galaxy.containers.docker_swarm
galaxy.datatypes
galaxy.datatypes.annotation
galaxy.datatypes.anvio
galaxy.datatypes.assembly
galaxy.datatypes.binary
galaxy.datatypes.blast
galaxy.datatypes.checkers
galaxy.datatypes.chrominfo
galaxy.datatypes.constructive_solid_geometry
galaxy.datatypes.converters
galaxy.datatypes.converters.bed_to_gff_converter
galaxy.datatypes.converters.bedgraph_to_array_tree_converter
galaxy.datatypes.converters.bgzip
galaxy.datatypes.converters.cram_to_bam
galaxy.datatypes.converters.fasta_to_len
galaxy.datatypes.converters.fasta_to_tabular_converter
galaxy.datatypes.converters.fastq_to_fqtoc
galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
galaxy.datatypes.converters.fastqsolexa_to_qual_converter
galaxy.datatypes.converters.gff_to_bed_converter
galaxy.datatypes.converters.gff_to_interval_index_converter
galaxy.datatypes.converters.interval_to_bed_converter
galaxy.datatypes.converters.interval_to_bedstrict_converter
galaxy.datatypes.converters.interval_to_coverage
galaxy.datatypes.converters.interval_to_fli
galaxy.datatypes.converters.interval_to_interval_index_converter
galaxy.datatypes.converters.interval_to_tabix_converter
galaxy.datatypes.converters.lped_to_fped_converter
galaxy.datatypes.converters.lped_to_pbed_converter
galaxy.datatypes.converters.maf_to_fasta_converter
galaxy.datatypes.converters.maf_to_interval_converter
galaxy.datatypes.converters.pbed_ldreduced_converter
galaxy.datatypes.converters.pbed_to_lped_converter
galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
galaxy.datatypes.converters.pileup_to_interval_index_converter
galaxy.datatypes.converters.ref_to_seq_taxonomy_converter
galaxy.datatypes.converters.sam_to_bam
galaxy.datatypes.converters.tabular_csv
galaxy.datatypes.converters.tabular_to_dbnsfp
galaxy.datatypes.converters.vcf_to_interval_index_converter
galaxy.datatypes.converters.vcf_to_vcf_bgzip
galaxy.datatypes.converters.wiggle_to_array_tree_converter
galaxy.datatypes.converters.wiggle_to_simple_converter
galaxy.datatypes.coverage
galaxy.datatypes.data
galaxy.datatypes.dataproviders
galaxy.datatypes.dataproviders.base
galaxy.datatypes.dataproviders.chunk
galaxy.datatypes.dataproviders.column
galaxy.datatypes.dataproviders.dataset
galaxy.datatypes.dataproviders.decorators
galaxy.datatypes.dataproviders.exceptions
galaxy.datatypes.dataproviders.external
galaxy.datatypes.dataproviders.hierarchy
galaxy.datatypes.dataproviders.line
galaxy.datatypes.display_applications
galaxy.datatypes.display_applications.application
galaxy.datatypes.display_applications.parameters
galaxy.datatypes.display_applications.util
galaxy.datatypes.genetics
galaxy.datatypes.gis
galaxy.datatypes.graph
galaxy.datatypes.images
galaxy.datatypes.interval
galaxy.datatypes.isa
galaxy.datatypes.metadata
galaxy.datatypes.microarrays
galaxy.datatypes.molecules
galaxy.datatypes.mothur
galaxy.datatypes.msa
galaxy.datatypes.neo4j
galaxy.datatypes.ngsindex
galaxy.datatypes.phylip
galaxy.datatypes.plant_tribes
galaxy.datatypes.proteomics
galaxy.datatypes.qualityscore
galaxy.datatypes.registry
galaxy.datatypes.sequence
galaxy.datatypes.sniff
galaxy.datatypes.spaln
galaxy.datatypes.tabular
galaxy.datatypes.text
galaxy.datatypes.tracks
galaxy.datatypes.triples
galaxy.datatypes.upload_util
galaxy.datatypes.util
galaxy.datatypes.util.generic_util
galaxy.datatypes.util.gff_util
galaxy.datatypes.util.maf_utilities
galaxy.datatypes.xml
galaxy.dependencies
galaxy.eggs
galaxy.exceptions
galaxy.exceptions.error_codes
galaxy.forms
galaxy.forms.forms
galaxy.job_execution
galaxy.job_execution.datasets
galaxy.job_execution.output_collect
galaxy.job_metrics
galaxy.job_metrics.collectl
galaxy.job_metrics.collectl.cli
galaxy.job_metrics.collectl.processes
galaxy.job_metrics.collectl.stats
galaxy.job_metrics.collectl.subsystems
galaxy.job_metrics.formatting
galaxy.job_metrics.instrumenters
galaxy.job_metrics.instrumenters.cgroup
galaxy.job_metrics.instrumenters.collectl
galaxy.job_metrics.instrumenters.core
galaxy.job_metrics.instrumenters.cpuinfo
galaxy.job_metrics.instrumenters.env
galaxy.job_metrics.instrumenters.hostname
galaxy.job_metrics.instrumenters.meminfo
galaxy.job_metrics.instrumenters.uname
galaxy.jobs
galaxy.jobs.actions
galaxy.jobs.actions.post
galaxy.jobs.command_factory
galaxy.jobs.dynamic_tool_destination
galaxy.jobs.handler
galaxy.jobs.manager
galaxy.jobs.mapper
galaxy.jobs.rule_helper
galaxy.jobs.rules
galaxy.jobs.runners
galaxy.jobs.runners.chronos
galaxy.jobs.runners.cli
galaxy.jobs.runners.condor
galaxy.jobs.runners.drmaa
galaxy.jobs.runners.godocker
galaxy.jobs.runners.kubernetes
galaxy.jobs.runners.local
galaxy.jobs.runners.pbs
galaxy.jobs.runners.pulsar
galaxy.jobs.runners.slurm
galaxy.jobs.runners.state_handler_factory
galaxy.jobs.runners.state_handlers
galaxy.jobs.runners.state_handlers.resubmit
galaxy.jobs.runners.tasks
galaxy.jobs.runners.univa
galaxy.jobs.runners.util
galaxy.jobs.runners.util.cli
galaxy.jobs.runners.util.cli.factory
galaxy.jobs.runners.util.cli.job
galaxy.jobs.runners.util.cli.job.lsf
galaxy.jobs.runners.util.cli.job.slurm
galaxy.jobs.runners.util.cli.job.slurm_torque
galaxy.jobs.runners.util.cli.job.torque
galaxy.jobs.runners.util.cli.shell
galaxy.jobs.runners.util.cli.shell.local
galaxy.jobs.runners.util.cli.shell.rsh
galaxy.jobs.runners.util.condor
galaxy.jobs.runners.util.env
galaxy.jobs.runners.util.external
galaxy.jobs.runners.util.job_script
galaxy.jobs.runners.util.kill
galaxy.jobs.runners.util.pykube_util
galaxy.jobs.runners.util.sudo
galaxy.jobs.splitters
galaxy.jobs.splitters.basic
galaxy.jobs.splitters.multi
galaxy.jobs.stock_rules
galaxy.jobs.transfer_manager
galaxy.main
galaxy.managers
galaxy.managers.annotatable
galaxy.managers.api_keys
galaxy.managers.base
galaxy.managers.citations
galaxy.managers.cloud
galaxy.managers.cloudauthzs
galaxy.managers.collections
galaxy.managers.collections_util
galaxy.managers.configuration
galaxy.managers.containers
galaxy.managers.context
galaxy.managers.datasets
galaxy.managers.deletable
galaxy.managers.folders
galaxy.managers.hdas
galaxy.managers.hdcas
galaxy.managers.histories
galaxy.managers.history_contents
galaxy.managers.jobs
galaxy.managers.lddas
galaxy.managers.libraries
galaxy.managers.library_datasets
galaxy.managers.pages
galaxy.managers.ratable
galaxy.managers.rbac_secured
galaxy.managers.roles
galaxy.managers.secured
galaxy.managers.sharable
galaxy.managers.taggable
galaxy.managers.tools
galaxy.managers.users
galaxy.managers.visualizations
galaxy.managers.workflows
galaxy.metadata
galaxy.metadata.set_metadata
galaxy.model
galaxy.model.base
galaxy.model.custom_types
galaxy.model.database_heartbeat
galaxy.model.dataset_collections
galaxy.model.dataset_collections.builder
galaxy.model.dataset_collections.matching
galaxy.model.dataset_collections.registry
galaxy.model.dataset_collections.structure
galaxy.model.dataset_collections.subcollections
galaxy.model.dataset_collections.type_description
galaxy.model.dataset_collections.types
galaxy.model.dataset_collections.types.list
galaxy.model.dataset_collections.types.paired
galaxy.model.item_attrs
galaxy.model.mapping
galaxy.model.metadata
galaxy.model.migrate
galaxy.model.migrate.check
galaxy.model.migrate.versions
galaxy.model.migrate.versions.0001_initial_tables
galaxy.model.migrate.versions.0002_metadata_file_table
galaxy.model.migrate.versions.0003_security_and_libraries
galaxy.model.migrate.versions.0004_indexes_and_defaults
galaxy.model.migrate.versions.0005_cleanup_datasets_fix
galaxy.model.migrate.versions.0006_change_qual_datatype
galaxy.model.migrate.versions.0007_sharing_histories
galaxy.model.migrate.versions.0008_galaxy_forms
galaxy.model.migrate.versions.0009_request_table
galaxy.model.migrate.versions.0010_hda_display_at_authz_table
galaxy.model.migrate.versions.0011_v0010_mysql_index_fix
galaxy.model.migrate.versions.0012_user_address
galaxy.model.migrate.versions.0013_change_lib_item_templates_to_forms
galaxy.model.migrate.versions.0014_pages
galaxy.model.migrate.versions.0015_tagging
galaxy.model.migrate.versions.0016_v0015_mysql_index_fix
galaxy.model.migrate.versions.0017_library_item_indexes
galaxy.model.migrate.versions.0018_ordered_tags_and_page_tags
galaxy.model.migrate.versions.0019_request_library_folder
galaxy.model.migrate.versions.0020_library_upload_job
galaxy.model.migrate.versions.0021_user_prefs
galaxy.model.migrate.versions.0022_visualization_tables
galaxy.model.migrate.versions.0023_page_published_and_deleted_columns
galaxy.model.migrate.versions.0024_page_slug_unique_constraint
galaxy.model.migrate.versions.0025_user_info
galaxy.model.migrate.versions.0026_cloud_tables
galaxy.model.migrate.versions.0027_request_events
galaxy.model.migrate.versions.0028_external_metadata_file_override
galaxy.model.migrate.versions.0029_user_actions
galaxy.model.migrate.versions.0030_history_slug_column
galaxy.model.migrate.versions.0031_community_and_workflow_tags
galaxy.model.migrate.versions.0032_stored_workflow_slug_column
galaxy.model.migrate.versions.0033_published_cols_for_histories_and_workflows
galaxy.model.migrate.versions.0034_page_user_share_association
galaxy.model.migrate.versions.0035_item_annotations_and_workflow_step_tags
galaxy.model.migrate.versions.0036_add_deleted_column_to_library_template_assoc_tables
galaxy.model.migrate.versions.0037_samples_library
galaxy.model.migrate.versions.0038_add_inheritable_column_to_library_template_assoc_tables
galaxy.model.migrate.versions.0039_add_synopsis_column_to_library_table
galaxy.model.migrate.versions.0040_page_annotations
galaxy.model.migrate.versions.0041_workflow_invocation
galaxy.model.migrate.versions.0042_workflow_invocation_fix
galaxy.model.migrate.versions.0043_visualization_sharing_tagging_annotating
galaxy.model.migrate.versions.0044_add_notify_column_to_request_table
galaxy.model.migrate.versions.0045_request_type_permissions_table
galaxy.model.migrate.versions.0046_post_job_actions
galaxy.model.migrate.versions.0047_job_table_user_id_column
galaxy.model.migrate.versions.0048_dataset_instance_state_column
galaxy.model.migrate.versions.0049_api_keys_table
galaxy.model.migrate.versions.0050_drop_cloud_tables
galaxy.model.migrate.versions.0051_imported_col_for_jobs_table
galaxy.model.migrate.versions.0052_sample_dataset_table
galaxy.model.migrate.versions.0053_item_ratings
galaxy.model.migrate.versions.0054_visualization_dbkey
galaxy.model.migrate.versions.0055_add_pja_assoc_for_jobs
galaxy.model.migrate.versions.0056_workflow_outputs
galaxy.model.migrate.versions.0057_request_notify
galaxy.model.migrate.versions.0058_history_import_export
galaxy.model.migrate.versions.0059_sample_dataset_file_path
galaxy.model.migrate.versions.0060_history_archive_import
galaxy.model.migrate.versions.0061_tasks
galaxy.model.migrate.versions.0062_user_openid_table
galaxy.model.migrate.versions.0063_sequencer_table
galaxy.model.migrate.versions.0064_add_run_and_sample_run_association_tables
galaxy.model.migrate.versions.0065_add_name_to_form_fields_and_values
galaxy.model.migrate.versions.0066_deferred_job_and_transfer_job_tables
galaxy.model.migrate.versions.0067_populate_sequencer_table
galaxy.model.migrate.versions.0068_rename_sequencer_to_external_services
galaxy.model.migrate.versions.0069_rename_sequencer_form_type
galaxy.model.migrate.versions.0070_add_info_column_to_deferred_job_table
galaxy.model.migrate.versions.0071_add_history_and_workflow_to_sample
galaxy.model.migrate.versions.0072_add_pid_and_socket_columns_to_transfer_job_table
galaxy.model.migrate.versions.0073_add_ldda_to_implicit_conversion_table
galaxy.model.migrate.versions.0074_add_purged_column_to_library_dataset_table
galaxy.model.migrate.versions.0075_add_subindex_column_to_run_table
galaxy.model.migrate.versions.0076_fix_form_values_data_corruption
galaxy.model.migrate.versions.0077_create_tool_tag_association_table
galaxy.model.migrate.versions.0078_add_columns_for_disk_usage_accounting
galaxy.model.migrate.versions.0079_input_library_to_job_table
galaxy.model.migrate.versions.0080_quota_tables
galaxy.model.migrate.versions.0081_add_tool_version_to_hda_ldda
galaxy.model.migrate.versions.0082_add_tool_shed_repository_table
galaxy.model.migrate.versions.0083_add_prepare_files_to_task
galaxy.model.migrate.versions.0084_add_ldda_id_to_implicit_conversion_table
galaxy.model.migrate.versions.0085_add_task_info
galaxy.model.migrate.versions.0086_add_tool_shed_repository_table_columns
galaxy.model.migrate.versions.0087_tool_id_guid_map_table
galaxy.model.migrate.versions.0088_add_installed_changeset_revison_column
galaxy.model.migrate.versions.0089_add_object_store_id_columns
galaxy.model.migrate.versions.0090_add_tool_shed_repository_table_columns
galaxy.model.migrate.versions.0091_add_tool_version_tables
galaxy.model.migrate.versions.0092_add_migrate_tools_table
galaxy.model.migrate.versions.0093_add_job_params_col
galaxy.model.migrate.versions.0094_add_job_handler_col
galaxy.model.migrate.versions.0095_hda_subsets
galaxy.model.migrate.versions.0096_openid_provider
galaxy.model.migrate.versions.0097_add_ctx_rev_column
galaxy.model.migrate.versions.0098_genome_index_tool_data_table
galaxy.model.migrate.versions.0099_add_tool_dependency_table
galaxy.model.migrate.versions.0100_alter_tool_dependency_table_version_column
galaxy.model.migrate.versions.0101_drop_installed_changeset_revision_column
galaxy.model.migrate.versions.0102_add_tool_dependency_status_columns
galaxy.model.migrate.versions.0103_add_tool_shed_repository_status_columns
galaxy.model.migrate.versions.0104_update_genome_downloader_job_parameters
galaxy.model.migrate.versions.0105_add_cleanup_event_table
galaxy.model.migrate.versions.0106_add_missing_indexes
galaxy.model.migrate.versions.0107_add_exit_code_to_job_and_task
galaxy.model.migrate.versions.0108_add_extended_metadata
galaxy.model.migrate.versions.0109_add_repository_dependency_tables
galaxy.model.migrate.versions.0110_add_dataset_uuid
galaxy.model.migrate.versions.0111_add_job_destinations
galaxy.model.migrate.versions.0112_add_data_manager_history_association_and_data_manager_job_association_tables
galaxy.model.migrate.versions.0113_update_migrate_tools_table
galaxy.model.migrate.versions.0114_update_migrate_tools_table_again
galaxy.model.migrate.versions.0115_longer_user_password_field
galaxy.model.migrate.versions.0116_drop_update_available_col_add_tool_shed_status_col
galaxy.model.migrate.versions.0117_add_user_activation
galaxy.model.migrate.versions.0118_add_hda_extended_metadata
galaxy.model.migrate.versions.0119_job_metrics
galaxy.model.migrate.versions.0120_dataset_collections
galaxy.model.migrate.versions.0121_workflow_uuids
galaxy.model.migrate.versions.0122_grow_mysql_blobs
galaxy.model.migrate.versions.0123_add_workflow_request_tables
galaxy.model.migrate.versions.0124_job_state_history
galaxy.model.migrate.versions.0125_workflow_step_tracking
galaxy.model.migrate.versions.0126_password_reset
galaxy.model.migrate.versions.0127_output_collection_adjustments
galaxy.model.migrate.versions.0128_session_timeout
galaxy.model.migrate.versions.0129_job_external_output_metadata_validity
galaxy.model.migrate.versions.0130_change_pref_datatype
galaxy.model.migrate.versions.0131_subworkflow_and_input_parameter_modules
galaxy.model.migrate.versions.0132_add_lastpasswordchange_to_user
galaxy.model.migrate.versions.0133_add_dependency_column_to_job
galaxy.model.migrate.versions.0134_hda_set_deleted_if_purged
galaxy.model.migrate.versions.0135_add_library_tags
galaxy.model.migrate.versions.0136_collection_and_workflow_state
galaxy.model.migrate.versions.0137_add_copied_from_job_id_column
galaxy.model.migrate.versions.0138_add_hda_version
galaxy.model.migrate.versions.0139_add_history_dataset_association_history_table
galaxy.model.migrate.versions.0140_add_dataset_version_to_job_to_input_dataset_association_table
galaxy.model.migrate.versions.0141_add_oidc_tables
galaxy.model.migrate.versions.0142_change_numeric_metric_precision
galaxy.model.migrate.versions.0143_add_cloudauthz_tables
galaxy.model.migrate.versions.0144_add_cleanup_event_user_table
galaxy.model.migrate.versions.0145_add_workflow_step_input
galaxy.model.migrate.versions.0146_workflow_paths
galaxy.model.migrate.versions.0147_job_messages
galaxy.model.migrate.versions.0148_add_checksum_table
galaxy.model.migrate.versions.0149_dynamic_tools
galaxy.model.migrate.versions.0150_add_create_time_field_for_cloudauthz
galaxy.model.migrate.versions.0151_add_worker_process
galaxy.model.migrate.versions.0152_add_metadata_file_uuid
galaxy.model.migrate.versions.0153_add_custos_authnz_token_table
galaxy.model.migrate.versions.0154_created_from_basename
galaxy.model.migrate.versions.util
galaxy.model.none_like
galaxy.model.orm
galaxy.model.orm.engine_factory
galaxy.model.orm.logging_connection_proxy
galaxy.model.orm.now
galaxy.model.orm.scripts
galaxy.model.search
galaxy.model.security
galaxy.model.store
galaxy.model.store.build_objects
galaxy.model.store.discover
galaxy.model.tags
galaxy.model.tool_shed_install
galaxy.model.tool_shed_install.mapping
galaxy.model.tool_shed_install.migrate
galaxy.model.tool_shed_install.migrate.check
galaxy.objectstore
galaxy.objectstore.azure_blob
galaxy.objectstore.cloud
galaxy.objectstore.pithos
galaxy.objectstore.pulsar
galaxy.objectstore.rods
galaxy.objectstore.s3
galaxy.objectstore.s3_multipart_upload
galaxy.openid
galaxy.openid.openid_manager
galaxy.openid.providers
galaxy.queue_worker
galaxy.queues
galaxy.quota
galaxy.security
galaxy.security.idencoding
galaxy.security.passwords
galaxy.security.validate_user_input
galaxy.selenium
galaxy.selenium.cli
galaxy.selenium.components
galaxy.selenium.data
galaxy.selenium.driver_factory
galaxy.selenium.has_driver
galaxy.selenium.navigates_galaxy
galaxy.selenium.scripts
galaxy.selenium.scripts.dump_tour
galaxy.selenium.sizzle
galaxy.selenium.smart_components
galaxy.tool_util
galaxy.tool_util.cwl
galaxy.tool_util.cwl.cwltool_deps
galaxy.tool_util.cwl.parser
galaxy.tool_util.cwl.representation
galaxy.tool_util.cwl.runtime_actions
galaxy.tool_util.cwl.schema
galaxy.tool_util.cwl.util
galaxy.tool_util.deps
galaxy.tool_util.deps.brew_exts
galaxy.tool_util.deps.brew_util
galaxy.tool_util.deps.commands
galaxy.tool_util.deps.conda_compat
galaxy.tool_util.deps.conda_util
galaxy.tool_util.deps.container_classes
galaxy.tool_util.deps.container_resolvers
galaxy.tool_util.deps.container_resolvers.explicit
galaxy.tool_util.deps.container_resolvers.mulled
galaxy.tool_util.deps.containers
galaxy.tool_util.deps.dependencies
galaxy.tool_util.deps.docker_util
galaxy.tool_util.deps.dockerfiles
galaxy.tool_util.deps.installable
galaxy.tool_util.deps.mulled
galaxy.tool_util.deps.mulled.mulled_build
galaxy.tool_util.deps.mulled.mulled_build_channel
galaxy.tool_util.deps.mulled.mulled_build_files
galaxy.tool_util.deps.mulled.mulled_build_tool
galaxy.tool_util.deps.mulled.mulled_search
galaxy.tool_util.deps.mulled.util
galaxy.tool_util.deps.requirements
galaxy.tool_util.deps.resolvers
galaxy.tool_util.deps.resolvers.brewed_tool_shed_packages
galaxy.tool_util.deps.resolvers.conda
galaxy.tool_util.deps.resolvers.galaxy_packages
galaxy.tool_util.deps.resolvers.homebrew
galaxy.tool_util.deps.resolvers.lmod
galaxy.tool_util.deps.resolvers.modules
galaxy.tool_util.deps.resolvers.resolver_mixins
galaxy.tool_util.deps.resolvers.tool_shed_packages
galaxy.tool_util.deps.resolvers.unlinked_tool_shed_packages
galaxy.tool_util.deps.singularity_util
galaxy.tool_util.deps.views
galaxy.tool_util.fetcher
galaxy.tool_util.lint
galaxy.tool_util.linters
galaxy.tool_util.linters.citations
galaxy.tool_util.linters.command
galaxy.tool_util.linters.cwl
galaxy.tool_util.linters.general
galaxy.tool_util.linters.help
galaxy.tool_util.linters.inputs
galaxy.tool_util.linters.outputs
galaxy.tool_util.linters.stdio
galaxy.tool_util.linters.tests
galaxy.tool_util.linters.xml_order
galaxy.tool_util.loader
galaxy.tool_util.loader_directory
galaxy.tool_util.locations
galaxy.tool_util.locations.dockstore
galaxy.tool_util.locations.file
galaxy.tool_util.locations.http
galaxy.tool_util.output_checker
galaxy.tool_util.parser
galaxy.tool_util.parser.cwl
galaxy.tool_util.parser.factory
galaxy.tool_util.parser.interface
galaxy.tool_util.parser.output_actions
galaxy.tool_util.parser.output_collection_def
galaxy.tool_util.parser.output_objects
galaxy.tool_util.parser.util
galaxy.tool_util.parser.xml
galaxy.tool_util.parser.yaml
galaxy.tool_util.provided_metadata
galaxy.tool_util.verify
galaxy.tool_util.verify.asserts
galaxy.tool_util.verify.asserts.archive
galaxy.tool_util.verify.asserts.hdf5
galaxy.tool_util.verify.asserts.tabular
galaxy.tool_util.verify.asserts.text
galaxy.tool_util.verify.asserts.xml
galaxy.tool_util.verify.interactor
galaxy.tool_util.verify.script
galaxy.tool_util.verify.test_data
galaxy.tools
galaxy.tools.actions
galaxy.tools.actions.data_manager
galaxy.tools.actions.data_source
galaxy.tools.actions.history_imp_exp
galaxy.tools.actions.metadata
galaxy.tools.actions.model_operations
galaxy.tools.actions.upload
galaxy.tools.actions.upload_common
galaxy.tools.cache
galaxy.tools.data
galaxy.tools.data_fetch
galaxy.tools.data_manager
galaxy.tools.data_manager.manager
galaxy.tools.error_reports
galaxy.tools.error_reports.plugins
galaxy.tools.error_reports.plugins.base_git
galaxy.tools.error_reports.plugins.email
galaxy.tools.error_reports.plugins.github
galaxy.tools.error_reports.plugins.gitlab
galaxy.tools.error_reports.plugins.influxdb
galaxy.tools.error_reports.plugins.json
galaxy.tools.error_reports.plugins.sentry
galaxy.tools.errors
galaxy.tools.evaluation
galaxy.tools.exception_handling
galaxy.tools.execute
galaxy.tools.expressions
galaxy.tools.expressions.evaluation
galaxy.tools.expressions.script
galaxy.tools.expressions.util
galaxy.tools.filters
galaxy.tools.imp_exp
galaxy.tools.imp_exp.export_history
galaxy.tools.imp_exp.unpack_tar_gz_archive
galaxy.tools.parameters
galaxy.tools.parameters.basic
galaxy.tools.parameters.dataset_matcher
galaxy.tools.parameters.dynamic_options
galaxy.tools.parameters.grouping
galaxy.tools.parameters.history_query
galaxy.tools.parameters.input_translation
galaxy.tools.parameters.meta
galaxy.tools.parameters.sanitize
galaxy.tools.parameters.validation
galaxy.tools.parameters.wrapped
galaxy.tools.parameters.wrapped_json
galaxy.tools.repositories
galaxy.tools.search
galaxy.tools.special_tools
galaxy.tools.test
galaxy.tools.toolbox
galaxy.tools.toolbox.base
galaxy.tools.toolbox.filters
galaxy.tools.toolbox.integrated_panel
galaxy.tools.toolbox.lineages
galaxy.tools.toolbox.lineages.factory
galaxy.tools.toolbox.lineages.interface
galaxy.tools.toolbox.panel
galaxy.tools.toolbox.parser
galaxy.tools.toolbox.tags
galaxy.tools.toolbox.watcher
galaxy.tools.util
galaxy.tools.util.galaxyops
galaxy.tools.util.maf_utilities
galaxy.tools.wrappers
galaxy.tours
galaxy.util
galaxy.util.aliaspickler
galaxy.util.bunch
galaxy.util.bytesize
galaxy.util.checkers
galaxy.util.compression_utils
galaxy.util.dbkeys
galaxy.util.dictifiable
galaxy.util.expressions
galaxy.util.facts
galaxy.util.filelock
galaxy.util.form_builder
galaxy.util.getargspec
galaxy.util.hash_util
galaxy.util.heartbeat
galaxy.util.image_util
galaxy.util.inflection
galaxy.util.json
galaxy.util.jstree
galaxy.util.lazy_process
galaxy.util.logging
galaxy.util.logging.fluent_log
galaxy.util.monitors
galaxy.util.object_wrapper
galaxy.util.odict
galaxy.util.oset
galaxy.util.pastescript
galaxy.util.pastescript.loadwsgi
galaxy.util.pastescript.serve
galaxy.util.path
galaxy.util.path.ntpath
galaxy.util.path.posixpath
galaxy.util.permutations
galaxy.util.plugin_config
galaxy.util.properties
galaxy.util.renamed_temporary_file
galaxy.util.rules_dsl
galaxy.util.sanitize_html
galaxy.util.script
galaxy.util.simplegraph
galaxy.util.sleeper
galaxy.util.sockets
galaxy.util.specs
galaxy.util.sqlite
galaxy.util.streamball
galaxy.util.submodules
galaxy.util.template
galaxy.util.tool_shed
galaxy.util.tool_shed.common_util
galaxy.util.tool_shed.encoding_util
galaxy.util.tool_shed.xml_util
galaxy.util.tool_version
galaxy.util.topsort
galaxy.util.ucsc
galaxy.util.validation
galaxy.util.watcher
galaxy.util.web_compat
galaxy.util.xml_macros
galaxy.version
galaxy.visualization
galaxy.visualization.data_providers
galaxy.visualization.data_providers.basic
galaxy.visualization.data_providers.cigar
galaxy.visualization.data_providers.genome
galaxy.visualization.data_providers.phyloviz
galaxy.visualization.data_providers.phyloviz.baseparser
galaxy.visualization.data_providers.phyloviz.newickparser
galaxy.visualization.data_providers.phyloviz.nexusparser
galaxy.visualization.data_providers.phyloviz.phyloxmlparser
galaxy.visualization.data_providers.registry
galaxy.visualization.genome
galaxy.visualization.genomes
galaxy.visualization.plugins
galaxy.visualization.plugins.config_parser
galaxy.visualization.plugins.interactive_environments
galaxy.visualization.plugins.plugin
galaxy.visualization.plugins.registry
galaxy.visualization.plugins.resource_parser
galaxy.visualization.plugins.utils
galaxy.visualization.tracks
galaxy.web
galaxy.web.buildapp
galaxy.web.form_builder
galaxy.web.formatting
galaxy.web.framework
galaxy.web.framework.base
galaxy.web.framework.decorators
galaxy.web.framework.helpers
galaxy.web.framework.helpers.grids
galaxy.web.framework.helpers.tags
galaxy.web.framework.middleware
galaxy.web.framework.middleware.batch
galaxy.web.framework.middleware.error
galaxy.web.framework.middleware.profile
galaxy.web.framework.middleware.remoteuser
galaxy.web.framework.middleware.request_id
galaxy.web.framework.middleware.sentry
galaxy.web.framework.middleware.sqldebug
galaxy.web.framework.middleware.static
galaxy.web.framework.middleware.statsd
galaxy.web.framework.middleware.translogger
galaxy.web.framework.middleware.xforwardedhost
galaxy.web.framework.webapp
galaxy.web.params
galaxy.web.proxy
galaxy.web_stack
galaxy.web_stack.handlers
galaxy.web_stack.message
galaxy.web_stack.transport
galaxy.webapps
galaxy.webapps.base
galaxy.webapps.base.controller
galaxy.webapps.galaxy
galaxy.webapps.galaxy.api
galaxy.webapps.galaxy.api.annotations
galaxy.webapps.galaxy.api.authenticate
galaxy.webapps.galaxy.api.cloud
galaxy.webapps.galaxy.api.cloudauthz
galaxy.webapps.galaxy.api.configuration
galaxy.webapps.galaxy.api.dataset_collections
galaxy.webapps.galaxy.api.datasets
galaxy.webapps.galaxy.api.datatypes
galaxy.webapps.galaxy.api.display_applications
galaxy.webapps.galaxy.api.dynamic_tools
galaxy.webapps.galaxy.api.extended_metadata
galaxy.webapps.galaxy.api.folder_contents
galaxy.webapps.galaxy.api.folders
galaxy.webapps.galaxy.api.forms
galaxy.webapps.galaxy.api.genomes
galaxy.webapps.galaxy.api.group_roles
galaxy.webapps.galaxy.api.group_users
galaxy.webapps.galaxy.api.groups
galaxy.webapps.galaxy.api.histories
galaxy.webapps.galaxy.api.history_contents
galaxy.webapps.galaxy.api.item_tags
galaxy.webapps.galaxy.api.job_files
galaxy.webapps.galaxy.api.jobs
galaxy.webapps.galaxy.api.libraries
galaxy.webapps.galaxy.api.library_contents
galaxy.webapps.galaxy.api.library_datasets
galaxy.webapps.galaxy.api.metrics
galaxy.webapps.galaxy.api.page_revisions
galaxy.webapps.galaxy.api.pages
galaxy.webapps.galaxy.api.plugins
galaxy.webapps.galaxy.api.provenance
galaxy.webapps.galaxy.api.quotas
galaxy.webapps.galaxy.api.remote_files
galaxy.webapps.galaxy.api.roles
galaxy.webapps.galaxy.api.search
galaxy.webapps.galaxy.api.tool_data
galaxy.webapps.galaxy.api.tool_dependencies
galaxy.webapps.galaxy.api.tool_shed_repositories
galaxy.webapps.galaxy.api.tools
galaxy.webapps.galaxy.api.toolshed
galaxy.webapps.galaxy.api.tours
galaxy.webapps.galaxy.api.uploads
galaxy.webapps.galaxy.api.users
galaxy.webapps.galaxy.api.visualizations
galaxy.webapps.galaxy.api.webhooks
galaxy.webapps.galaxy.api.workflows
galaxy.webapps.galaxy.buildapp
galaxy.webapps.galaxy.controllers
galaxy.webapps.galaxy.controllers.admin
galaxy.webapps.galaxy.controllers.admin_toolshed
galaxy.webapps.galaxy.controllers.async
galaxy.webapps.galaxy.controllers.authnz
galaxy.webapps.galaxy.controllers.data_manager
galaxy.webapps.galaxy.controllers.dataset
galaxy.webapps.galaxy.controllers.error
galaxy.webapps.galaxy.controllers.forms
galaxy.webapps.galaxy.controllers.history
galaxy.webapps.galaxy.controllers.interactive_environments
galaxy.webapps.galaxy.controllers.library
galaxy.webapps.galaxy.controllers.openid
galaxy.webapps.galaxy.controllers.page
galaxy.webapps.galaxy.controllers.root
galaxy.webapps.galaxy.controllers.shed_tool_static
galaxy.webapps.galaxy.controllers.tag
galaxy.webapps.galaxy.controllers.tool_runner
galaxy.webapps.galaxy.controllers.user
galaxy.webapps.galaxy.controllers.userskeys
galaxy.webapps.galaxy.controllers.visualization
galaxy.webapps.galaxy.controllers.workflow
galaxy.webapps.reports
galaxy.webapps.reports.app
galaxy.webapps.reports.buildapp
galaxy.webapps.reports.config
galaxy.webapps.reports.controllers
galaxy.webapps.reports.controllers.history
galaxy.webapps.reports.controllers.home
galaxy.webapps.reports.controllers.jobs
galaxy.webapps.reports.controllers.query
galaxy.webapps.reports.controllers.root
galaxy.webapps.reports.controllers.system
galaxy.webapps.reports.controllers.tools
galaxy.webapps.reports.controllers.users
galaxy.webapps.reports.controllers.workflows
galaxy.webapps.reports.framework
galaxy.webapps.reports.framework.grids
galaxy.webapps.tool_shed
galaxy.webapps.tool_shed.api
galaxy.webapps.tool_shed.api.authenticate
galaxy.webapps.tool_shed.api.categories
galaxy.webapps.tool_shed.api.configuration
galaxy.webapps.tool_shed.api.groups
galaxy.webapps.tool_shed.api.repositories
galaxy.webapps.tool_shed.api.repository_revisions
galaxy.webapps.tool_shed.api.tools
galaxy.webapps.tool_shed.api.users
galaxy.webapps.tool_shed.app
galaxy.webapps.tool_shed.buildapp
galaxy.webapps.tool_shed.config
galaxy.webapps.tool_shed.controllers
galaxy.webapps.tool_shed.controllers.admin
galaxy.webapps.tool_shed.controllers.groups
galaxy.webapps.tool_shed.controllers.hg
galaxy.webapps.tool_shed.controllers.repository
galaxy.webapps.tool_shed.controllers.repository_review
galaxy.webapps.tool_shed.controllers.upload
galaxy.webapps.tool_shed.controllers.user
galaxy.webapps.tool_shed.framework
galaxy.webapps.tool_shed.framework.middleware
galaxy.webapps.tool_shed.framework.middleware.remoteuser
galaxy.webapps.tool_shed.model
galaxy.webapps.tool_shed.model.mapping
galaxy.webapps.tool_shed.model.migrate
galaxy.webapps.tool_shed.model.migrate.check
galaxy.webapps.tool_shed.model.migrate.versions
galaxy.webapps.tool_shed.model.migrate.versions.0001_initial_tables
galaxy.webapps.tool_shed.model.migrate.versions.0002_add_tool_suite_column
galaxy.webapps.tool_shed.model.migrate.versions.0003_review_and_review_association_tables
galaxy.webapps.tool_shed.model.migrate.versions.0004_repository_tables
galaxy.webapps.tool_shed.model.migrate.versions.0005_drop_tool_related_tables
galaxy.webapps.tool_shed.model.migrate.versions.0006_add_email_alerts_column
galaxy.webapps.tool_shed.model.migrate.versions.0007_add_long_description_times_downloaded_columns
galaxy.webapps.tool_shed.model.migrate.versions.0008_add_repository_metadata_table
galaxy.webapps.tool_shed.model.migrate.versions.0009_add_malicious_column
galaxy.webapps.tool_shed.model.migrate.versions.0010_add_new_repo_alert_column
galaxy.webapps.tool_shed.model.migrate.versions.0011_add_tool_versions_column
galaxy.webapps.tool_shed.model.migrate.versions.0012_add_downloadable_column
galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables
galaxy.webapps.tool_shed.model.migrate.versions.0014_add_deprecated_column
galaxy.webapps.tool_shed.model.migrate.versions.0015_add_api_keys_table
galaxy.webapps.tool_shed.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns
galaxy.webapps.tool_shed.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table
galaxy.webapps.tool_shed.model.migrate.versions.0018_add_repository_metadata_flag_columns
galaxy.webapps.tool_shed.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column
galaxy.webapps.tool_shed.model.migrate.versions.0020_add_repository_type_column
galaxy.webapps.tool_shed.model.migrate.versions.0021_change_repository_type_value
galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles
galaxy.webapps.tool_shed.model.migrate.versions.0023_add_repository_url_and_hompeage_url
galaxy.webapps.tool_shed.model.migrate.versions.0024_password_reset
galaxy.webapps.tool_shed.model.migrate.versions.0025_session_timeout
galaxy.webapps.tool_shed.model.migrate.versions.0026_add_numeric_revision_column
galaxy.webapps.tool_shed.search
galaxy.webapps.tool_shed.search.repo_search
galaxy.webapps.tool_shed.search.tool_search
galaxy.webapps.tool_shed.security
galaxy.webapps.tool_shed.util
galaxy.webapps.tool_shed.util.hgweb_config
galaxy.webapps.tool_shed.util.ratings_util
galaxy.webapps.tool_shed.util.shed_statistics
galaxy.webapps.util
galaxy.webhooks
galaxy.work
galaxy.work.context
galaxy.workflow
galaxy.workflow.extract
galaxy.workflow.modules
galaxy.workflow.render
galaxy.workflow.resources
galaxy.workflow.run
galaxy.workflow.run_request
galaxy.workflow.schedulers
galaxy.workflow.schedulers.core
galaxy.workflow.scheduling_manager
galaxy.workflow.steps
galaxy_ext
galaxy_ext.expressions
galaxy_ext.expressions.handle_job
galaxy_ext.metadata
galaxy_ext.metadata.set_metadata
tool_shed
tool_shed.capsule
tool_shed.capsule.capsule_manager
tool_shed.dependencies
tool_shed.dependencies.attribute_handlers
tool_shed.dependencies.repository
tool_shed.dependencies.repository.relation_builder
tool_shed.dependencies.tool
tool_shed.dependencies.tool.tag_attribute_handler
tool_shed.galaxy_install
tool_shed.galaxy_install.datatypes
tool_shed.galaxy_install.datatypes.custom_datatype_manager
tool_shed.galaxy_install.dependency_display
tool_shed.galaxy_install.grids
tool_shed.galaxy_install.grids.admin_toolshed_grids
tool_shed.galaxy_install.install_manager
tool_shed.galaxy_install.installed_repository_manager
tool_shed.galaxy_install.metadata
tool_shed.galaxy_install.metadata.installed_repository_metadata_manager
tool_shed.galaxy_install.migrate
tool_shed.galaxy_install.migrate.check
tool_shed.galaxy_install.migrate.common
tool_shed.galaxy_install.migrate.versions
tool_shed.galaxy_install.migrate.versions.0001_tools
tool_shed.galaxy_install.migrate.versions.0002_tools
tool_shed.galaxy_install.migrate.versions.0003_tools
tool_shed.galaxy_install.migrate.versions.0004_tools
tool_shed.galaxy_install.migrate.versions.0005_tools
tool_shed.galaxy_install.migrate.versions.0006_tools
tool_shed.galaxy_install.migrate.versions.0007_tools
tool_shed.galaxy_install.migrate.versions.0008_tools
tool_shed.galaxy_install.migrate.versions.0009_tools
tool_shed.galaxy_install.migrate.versions.0010_tools
tool_shed.galaxy_install.migrate.versions.0011_tools
tool_shed.galaxy_install.migrate.versions.0012_tools
tool_shed.galaxy_install.repair_repository_manager
tool_shed.galaxy_install.repository_dependencies
tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager
tool_shed.galaxy_install.tool_dependencies
tool_shed.galaxy_install.tool_dependencies.env_manager
tool_shed.galaxy_install.tool_dependencies.recipe
tool_shed.galaxy_install.tool_dependencies.recipe.asynchronous_reader
tool_shed.galaxy_install.tool_dependencies.recipe.env_file_builder
tool_shed.galaxy_install.tool_dependencies.recipe.install_environment
tool_shed.galaxy_install.tool_dependencies.recipe.recipe_manager
tool_shed.galaxy_install.tool_dependencies.recipe.step_handler
tool_shed.galaxy_install.tool_dependencies.recipe.tag_handler
tool_shed.galaxy_install.tool_migration_manager
tool_shed.galaxy_install.tools
tool_shed.galaxy_install.tools.data_manager
tool_shed.galaxy_install.tools.tool_panel_manager
tool_shed.galaxy_install.update_repository_manager
tool_shed.galaxy_install.utility_containers
tool_shed.grids
tool_shed.grids.admin_grids
tool_shed.grids.repository_grid_filter_manager
tool_shed.grids.repository_grids
tool_shed.grids.repository_review_grids
tool_shed.grids.util
tool_shed.managers
tool_shed.managers.groups
tool_shed.managers.repositories
tool_shed.metadata
tool_shed.metadata.metadata_generator
tool_shed.metadata.repository_metadata_manager
tool_shed.repository_registry
tool_shed.repository_types
tool_shed.repository_types.metadata
tool_shed.repository_types.registry
tool_shed.repository_types.repository_suite_definition
tool_shed.repository_types.tool_dependency_definition
tool_shed.repository_types.unrestricted
tool_shed.repository_types.util
tool_shed.tool_shed_registry
tool_shed.tools
tool_shed.tools.data_table_manager
tool_shed.tools.tool_validator
tool_shed.tools.tool_version_manager
tool_shed.util
tool_shed.util.admin_util
tool_shed.util.basic_util
tool_shed.util.commit_util
tool_shed.util.common_util
tool_shed.util.container_util
tool_shed.util.encoding_util
tool_shed.util.hg_util
tool_shed.util.metadata_util
tool_shed.util.readme_util
tool_shed.util.repository_content_util
tool_shed.util.repository_util
tool_shed.util.review_util
tool_shed.util.search_util
tool_shed.util.shed_util_common
tool_shed.util.tool_dependency_util
tool_shed.util.tool_util
tool_shed.util.web_util
tool_shed.util.workflow_util
tool_shed.util.xml_util
tool_shed.utility_containers
tool_shed.utility_containers.utility_container_manager
