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galaxy.webapps.tool_shed.model.migrate.versions package

Submodules

galaxy.webapps.tool_shed.model.migrate.versions.0001_initial_tables module

Migration script to create initial tables.

galaxy.webapps.tool_shed.model.migrate.versions.0001_initial_tables.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0001_initial_tables.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0001_initial_tables.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0002_add_tool_suite_column module

Migration script to add the suite column to the tool table.

galaxy.webapps.tool_shed.model.migrate.versions.0002_add_tool_suite_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0002_add_tool_suite_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0003_review_and_review_association_tables module

Adds the tool_rating_association table, enabling tools to be rated along with review comments.

galaxy.webapps.tool_shed.model.migrate.versions.0003_review_and_review_association_tables.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0003_review_and_review_association_tables.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0003_review_and_review_association_tables.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0004_repository_tables module

Adds the repository, repository_rating_association and repository_category_association tables.

galaxy.webapps.tool_shed.model.migrate.versions.0004_repository_tables.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0004_repository_tables.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0004_repository_tables.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0006_add_email_alerts_column module

Migration script to add the email_alerts column to the repository table.

galaxy.webapps.tool_shed.model.migrate.versions.0006_add_email_alerts_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0006_add_email_alerts_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0007_add_long_description_times_downloaded_columns module

Migration script to add the long_description and times_downloaded columns to the repository table.

galaxy.webapps.tool_shed.model.migrate.versions.0007_add_long_description_times_downloaded_columns.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0007_add_long_description_times_downloaded_columns.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0008_add_repository_metadata_table module

Migration script to add the repository_metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0008_add_repository_metadata_table.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0008_add_repository_metadata_table.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0008_add_repository_metadata_table.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0009_add_malicious_column module

Migration script to add the malicious column to the repository_metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0009_add_malicious_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0009_add_malicious_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0010_add_new_repo_alert_column module

Migration script to add the new_repo_alert column to the galaxy_user table.

galaxy.webapps.tool_shed.model.migrate.versions.0010_add_new_repo_alert_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0010_add_new_repo_alert_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0011_add_tool_versions_column module

Migration script to add the tool_versions column to the repository_metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0011_add_tool_versions_column.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0011_add_tool_versions_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0011_add_tool_versions_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0012_add_downloadable_column module

Migration script to add the downloadable column to the repository_metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0012_add_downloadable_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0012_add_downloadable_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables module

Migration script to add the repository_review, component_review and component tables and the Repository Reviewer group and role.

galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables.NOW()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables.nextval(migrate_engine, table, col='id')[source]
galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables.localtimestamp(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables.boolean_false(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0014_add_deprecated_column module

Migration script to add the deprecated column to the repository table.

galaxy.webapps.tool_shed.model.migrate.versions.0014_add_deprecated_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0014_add_deprecated_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0015_add_api_keys_table module

Migration script to add the api_keys table.

galaxy.webapps.tool_shed.model.migrate.versions.0015_add_api_keys_table.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0015_add_api_keys_table.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0015_add_api_keys_table.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns module

Migration script to add the tool_test_errors, do_not_test, tools_functionally_correct, and time_last_tested columns to the repository_metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table module

Migration script to add the includes_datatypes, has_repository_dependencies, includes_tools, includes_tool_dependencies and includes_workflows columns to the repository_metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0018_add_repository_metadata_flag_columns module

Migration script to alter the repository_metadata table by dropping the tool_test_errors column and adding columns tool_test_results, missing_test_components.

galaxy.webapps.tool_shed.model.migrate.versions.0018_add_repository_metadata_flag_columns.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0018_add_repository_metadata_flag_columns.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column module

Migration script to add the skip_tool_test table and add the test_install_error column to the repository_metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0020_add_repository_type_column module

Migration script to add the type column to the repository table.

galaxy.webapps.tool_shed.model.migrate.versions.0020_add_repository_type_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0020_add_repository_type_column.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0021_change_repository_type_value module

Migration script to change repository.type column value from generic to unrestricted.

galaxy.webapps.tool_shed.model.migrate.versions.0021_change_repository_type_value.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0021_change_repository_type_value.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles module

Migration script to create the repository_role_association table, insert name-spaced repository administrative roles into the role table and associate each repository and owner with the appropriate name-spaced role.

galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles.NOW()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles.nextval(migrate_engine, table, col='id')[source]
galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles.localtimestamp(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles.boolean_false(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0023_add_repository_url_and_hompeage_url module

Migration script to add the remote_repository_url and homepage_url columns to the repository table.

galaxy.webapps.tool_shed.model.migrate.versions.0023_add_repository_url_and_hompeage_url.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0023_add_repository_url_and_hompeage_url.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0024_password_reset module

Migration script for the password reset table

galaxy.webapps.tool_shed.model.migrate.versions.0024_password_reset.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0024_password_reset.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0024_password_reset.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0025_session_timeout module

Migration script to add session update time (used for timeouts)

galaxy.webapps.tool_shed.model.migrate.versions.0025_session_timeout.now()

Return a new datetime representing UTC day and time.

galaxy.webapps.tool_shed.model.migrate.versions.0025_session_timeout.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0025_session_timeout.downgrade(migrate_engine)[source]

galaxy.webapps.tool_shed.model.migrate.versions.0026_add_numeric_revision_column module

Migration script to add the numeric_revision column to the repository metadata table.

galaxy.webapps.tool_shed.model.migrate.versions.0026_add_numeric_revision_column.upgrade(migrate_engine)[source]
galaxy.webapps.tool_shed.model.migrate.versions.0026_add_numeric_revision_column.downgrade(migrate_engine)[source]