Source code for galaxy.webapps.tool_shed.model.migrate.versions.0009_add_malicious_column

"""
Migration script to add the malicious column to the repository_metadata table.
"""
from __future__ import print_function

import logging
import sys

from sqlalchemy import Boolean, Column, MetaData, Table

log = logging.getLogger(__name__)
log.setLevel(logging.DEBUG)
handler = logging.StreamHandler(sys.stdout)
format = "%(name)s %(levelname)s %(asctime)s %(message)s"
formatter = logging.Formatter(format)
handler.setFormatter(formatter)
log.addHandler(handler)

metadata = MetaData()


[docs]def upgrade(migrate_engine):
    print(__doc__)
    metadata.bind = migrate_engine
    metadata.reflect()
    # Create and initialize imported column in job table.
    Repository_metadata_table = Table("repository_metadata", metadata, autoload=True)
    c = Column("malicious", Boolean, default=False, index=True)
    try:
        # Create
        c.create(Repository_metadata_table, index_name="ix_repository_metadata_malicious")
        assert c is Repository_metadata_table.c.malicious
        # Initialize.
        if migrate_engine.name == 'mysql' or migrate_engine.name == 'sqlite':
            default_false = "0"
        elif migrate_engine.name in ['postgresql', 'postgres']:
            default_false = "false"
        migrate_engine.execute("UPDATE repository_metadata SET malicious=%s" % default_false)
    except Exception:
        log.exception("Adding malicious column to the repository_metadata table failed.")


[docs]def downgrade(migrate_engine):
    metadata.bind = migrate_engine
    metadata.reflect()
    # Drop malicious column from repository_metadata table.
    Repository_metadata_table = Table("repository_metadata", metadata, autoload=True)
    try:
        Repository_metadata_table.c.malicious.drop()
    except Exception:
        log.exception("Dropping column malicious from the repository_metadata table failed.")