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galaxy
galaxy.actions
galaxy.actions.admin
galaxy.app
galaxy.auth
galaxy.auth.providers
galaxy.auth.providers.alwaysreject
galaxy.auth.providers.ldap_ad
galaxy.auth.providers.localdb
galaxy.auth.providers.pam_auth
galaxy.config
galaxy.containers
galaxy.containers.docker
galaxy.containers.docker_decorators
galaxy.containers.docker_model
galaxy.containers.docker_swarm
galaxy.containers.docker_swarm_manager
galaxy.dataset_collections
galaxy.dataset_collections.builder
galaxy.dataset_collections.matching
galaxy.dataset_collections.registry
galaxy.dataset_collections.structure
galaxy.dataset_collections.subcollections
galaxy.dataset_collections.type_description
galaxy.dataset_collections.types
galaxy.dataset_collections.types.list
galaxy.dataset_collections.types.paired
galaxy.datatypes
galaxy.datatypes.assembly
galaxy.datatypes.binary
galaxy.datatypes.blast
galaxy.datatypes.checkers
galaxy.datatypes.chrominfo
galaxy.datatypes.constructive_solid_geometry
galaxy.datatypes.converters
galaxy.datatypes.converters.bed_to_gff_converter
galaxy.datatypes.converters.bedgraph_to_array_tree_converter
galaxy.datatypes.converters.bgzip
galaxy.datatypes.converters.fasta_to_len
galaxy.datatypes.converters.fasta_to_tabular_converter
galaxy.datatypes.converters.fastq_to_fqtoc
galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
galaxy.datatypes.converters.fastqsolexa_to_qual_converter
galaxy.datatypes.converters.gff_to_bed_converter
galaxy.datatypes.converters.gff_to_interval_index_converter
galaxy.datatypes.converters.interval_to_bed_converter
galaxy.datatypes.converters.interval_to_bedstrict_converter
galaxy.datatypes.converters.interval_to_coverage
galaxy.datatypes.converters.interval_to_fli
galaxy.datatypes.converters.interval_to_interval_index_converter
galaxy.datatypes.converters.interval_to_tabix_converter
galaxy.datatypes.converters.lped_to_fped_converter
galaxy.datatypes.converters.lped_to_pbed_converter
galaxy.datatypes.converters.maf_to_fasta_converter
galaxy.datatypes.converters.maf_to_interval_converter
galaxy.datatypes.converters.pbed_ldreduced_converter
galaxy.datatypes.converters.pbed_to_lped_converter
galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
galaxy.datatypes.converters.pileup_to_interval_index_converter
galaxy.datatypes.converters.ref_to_seq_taxonomy_converter
galaxy.datatypes.converters.sam_to_bam
galaxy.datatypes.converters.tabular_to_dbnsfp
galaxy.datatypes.converters.vcf_to_interval_index_converter
galaxy.datatypes.converters.vcf_to_vcf_bgzip
galaxy.datatypes.converters.wiggle_to_array_tree_converter
galaxy.datatypes.converters.wiggle_to_simple_converter
galaxy.datatypes.coverage
galaxy.datatypes.data
galaxy.datatypes.dataproviders
galaxy.datatypes.dataproviders.base
galaxy.datatypes.dataproviders.chunk
galaxy.datatypes.dataproviders.column
galaxy.datatypes.dataproviders.dataset
galaxy.datatypes.dataproviders.decorators
galaxy.datatypes.dataproviders.exceptions
galaxy.datatypes.dataproviders.external
galaxy.datatypes.dataproviders.hierarchy
galaxy.datatypes.dataproviders.line
galaxy.datatypes.display_applications
galaxy.datatypes.display_applications.application
galaxy.datatypes.display_applications.parameters
galaxy.datatypes.display_applications.util
galaxy.datatypes.genetics
galaxy.datatypes.graph
galaxy.datatypes.images
galaxy.datatypes.interval
galaxy.datatypes.metadata
galaxy.datatypes.molecules
galaxy.datatypes.mothur
galaxy.datatypes.msa
galaxy.datatypes.neo4j
galaxy.datatypes.ngsindex
galaxy.datatypes.proteomics
galaxy.datatypes.qualityscore
galaxy.datatypes.registry
galaxy.datatypes.sequence
galaxy.datatypes.sniff
galaxy.datatypes.tabular
galaxy.datatypes.text
galaxy.datatypes.tracks
galaxy.datatypes.triples
galaxy.datatypes.util
galaxy.datatypes.util.generic_util
galaxy.datatypes.util.gff_util
galaxy.datatypes.xml
galaxy.dependencies
galaxy.eggs
galaxy.exceptions
galaxy.exceptions.error_codes
galaxy.forms
galaxy.forms.forms
galaxy.jobs
galaxy.jobs.actions
galaxy.jobs.actions.post
galaxy.jobs.command_factory
galaxy.jobs.datasets
galaxy.jobs.dynamic_tool_destination
galaxy.jobs.error_level
galaxy.jobs.handler
galaxy.jobs.manager
galaxy.jobs.mapper
galaxy.jobs.metrics
galaxy.jobs.metrics.collectl
galaxy.jobs.metrics.collectl.cli
galaxy.jobs.metrics.collectl.processes
galaxy.jobs.metrics.collectl.stats
galaxy.jobs.metrics.collectl.subsystems
galaxy.jobs.metrics.formatting
galaxy.jobs.metrics.instrumenters
galaxy.jobs.metrics.instrumenters.collectl
galaxy.jobs.metrics.instrumenters.core
galaxy.jobs.metrics.instrumenters.cpuinfo
galaxy.jobs.metrics.instrumenters.env
galaxy.jobs.metrics.instrumenters.meminfo
galaxy.jobs.metrics.instrumenters.uname
galaxy.jobs.output_checker
galaxy.jobs.rule_helper
galaxy.jobs.runners
galaxy.jobs.runners.cli
galaxy.jobs.runners.condor
galaxy.jobs.runners.drmaa
galaxy.jobs.runners.godocker
galaxy.jobs.runners.kubernetes
galaxy.jobs.runners.local
galaxy.jobs.runners.pbs
galaxy.jobs.runners.pulsar
galaxy.jobs.runners.slurm
galaxy.jobs.runners.state_handler_factory
galaxy.jobs.runners.state_handlers
galaxy.jobs.runners.state_handlers.resubmit
galaxy.jobs.runners.tasks
galaxy.jobs.runners.util
galaxy.jobs.runners.util.cli
galaxy.jobs.runners.util.cli.factory
galaxy.jobs.runners.util.cli.job
galaxy.jobs.runners.util.cli.job.slurm
galaxy.jobs.runners.util.cli.job.slurm_torque
galaxy.jobs.runners.util.cli.job.torque
galaxy.jobs.runners.util.cli.shell
galaxy.jobs.runners.util.cli.shell.local
galaxy.jobs.runners.util.cli.shell.rsh
galaxy.jobs.runners.util.condor
galaxy.jobs.runners.util.drmaa
galaxy.jobs.runners.util.env
galaxy.jobs.runners.util.external
galaxy.jobs.runners.util.job_script
galaxy.jobs.runners.util.kill
galaxy.jobs.runners.util.retry
galaxy.jobs.runners.util.sudo
galaxy.jobs.splitters
galaxy.jobs.splitters.basic
galaxy.jobs.splitters.multi
galaxy.jobs.stock_rules
galaxy.jobs.transfer_manager
galaxy.main
galaxy.managers
galaxy.managers.annotatable
galaxy.managers.api_keys
galaxy.managers.base
galaxy.managers.citations
galaxy.managers.collections
galaxy.managers.collections_util
galaxy.managers.configuration
galaxy.managers.containers
galaxy.managers.context
galaxy.managers.datasets
galaxy.managers.deletable
galaxy.managers.folders
galaxy.managers.hdas
galaxy.managers.hdcas
galaxy.managers.histories
galaxy.managers.history_contents
galaxy.managers.lddas
galaxy.managers.libraries
galaxy.managers.pages
galaxy.managers.ratable
galaxy.managers.rbac_secured
galaxy.managers.roles
galaxy.managers.secured
galaxy.managers.sharable
galaxy.managers.taggable
galaxy.managers.tags
galaxy.managers.users
galaxy.managers.visualizations
galaxy.managers.workflows
galaxy.model
galaxy.model.base
galaxy.model.custom_types
galaxy.model.item_attrs
galaxy.model.mapping
galaxy.model.metadata
galaxy.model.migrate
galaxy.model.migrate.check
galaxy.model.orm
galaxy.model.orm.engine_factory
galaxy.model.orm.logging_connection_proxy
galaxy.model.orm.now
galaxy.model.orm.scripts
galaxy.model.search
galaxy.model.tool_shed_install
galaxy.model.tool_shed_install.mapping
galaxy.model.tool_shed_install.migrate
galaxy.model.tool_shed_install.migrate.check
galaxy.model.util
galaxy.objectstore
galaxy.objectstore.azure_blob
galaxy.objectstore.pulsar
galaxy.objectstore.rods
galaxy.objectstore.s3
galaxy.objectstore.s3_multipart_upload
galaxy.openid
galaxy.openid.providers
galaxy.queue_worker
galaxy.queues
galaxy.quota
galaxy.security
galaxy.security.passwords
galaxy.security.validate_user_input
galaxy.tools
galaxy.tools.actions
galaxy.tools.actions.data_manager
galaxy.tools.actions.data_source
galaxy.tools.actions.history_imp_exp
galaxy.tools.actions.metadata
galaxy.tools.actions.model_operations
galaxy.tools.actions.upload
galaxy.tools.actions.upload_common
galaxy.tools.cwl
galaxy.tools.cwl.cwltool_deps
galaxy.tools.cwl.parser
galaxy.tools.cwl.representation
galaxy.tools.cwl.runtime_actions
galaxy.tools.cwl.schema
galaxy.tools.data
galaxy.tools.data_manager
galaxy.tools.data_manager.manager
galaxy.tools.deps
galaxy.tools.deps.brew_exts
galaxy.tools.deps.brew_util
galaxy.tools.deps.commands
galaxy.tools.deps.conda_compat
galaxy.tools.deps.conda_util
galaxy.tools.deps.container_resolvers
galaxy.tools.deps.container_resolvers.explicit
galaxy.tools.deps.container_resolvers.mulled
galaxy.tools.deps.containers
galaxy.tools.deps.dependencies
galaxy.tools.deps.docker_util
galaxy.tools.deps.dockerfiles
galaxy.tools.deps.installable
galaxy.tools.deps.mulled
galaxy.tools.deps.mulled.mulled_build
galaxy.tools.deps.mulled.mulled_build_channel
galaxy.tools.deps.mulled.mulled_build_files
galaxy.tools.deps.mulled.mulled_build_tool
galaxy.tools.deps.mulled.mulled_search
galaxy.tools.deps.mulled.util
galaxy.tools.deps.requirements
galaxy.tools.deps.resolvers
galaxy.tools.deps.resolvers.brewed_tool_shed_packages
galaxy.tools.deps.resolvers.conda
galaxy.tools.deps.resolvers.galaxy_packages
galaxy.tools.deps.resolvers.homebrew
galaxy.tools.deps.resolvers.modules
galaxy.tools.deps.resolvers.resolver_mixins
galaxy.tools.deps.resolvers.tool_shed_packages
galaxy.tools.deps.resolvers.unlinked_tool_shed_packages
galaxy.tools.deps.views
galaxy.tools.errors
galaxy.tools.evaluation
galaxy.tools.exception_handling
galaxy.tools.execute
galaxy.tools.fetcher
galaxy.tools.filters
galaxy.tools.imp_exp
galaxy.tools.imp_exp.export_history
galaxy.tools.imp_exp.unpack_tar_gz_archive
galaxy.tools.lint
galaxy.tools.lint_util
galaxy.tools.linters
galaxy.tools.linters.citations
galaxy.tools.linters.command
galaxy.tools.linters.general
galaxy.tools.linters.help
galaxy.tools.linters.inputs
galaxy.tools.linters.outputs
galaxy.tools.linters.stdio
galaxy.tools.linters.tests
galaxy.tools.linters.xml_order
galaxy.tools.loader
galaxy.tools.loader_directory
galaxy.tools.locations
galaxy.tools.locations.dockstore
galaxy.tools.locations.file
galaxy.tools.locations.http
galaxy.tools.parameters
galaxy.tools.parameters.basic
galaxy.tools.parameters.dataset_matcher
galaxy.tools.parameters.dynamic_options
galaxy.tools.parameters.grouping
galaxy.tools.parameters.history_query
galaxy.tools.parameters.input_translation
galaxy.tools.parameters.meta
galaxy.tools.parameters.output_collect
galaxy.tools.parameters.sanitize
galaxy.tools.parameters.validation
galaxy.tools.parameters.wrapped
galaxy.tools.parameters.wrapped_json
galaxy.tools.parser
galaxy.tools.parser.cwl
galaxy.tools.parser.factory
galaxy.tools.parser.interface
galaxy.tools.parser.output_actions
galaxy.tools.parser.output_collection_def
galaxy.tools.parser.output_objects
galaxy.tools.parser.util
galaxy.tools.parser.xml
galaxy.tools.parser.yaml
galaxy.tools.search
galaxy.tools.special_tools
galaxy.tools.test
galaxy.tools.toolbox
galaxy.tools.toolbox.base
galaxy.tools.toolbox.filters
galaxy.tools.toolbox.integrated_panel
galaxy.tools.toolbox.lineages
galaxy.tools.toolbox.lineages.factory
galaxy.tools.toolbox.lineages.interface
galaxy.tools.toolbox.panel
galaxy.tools.toolbox.parser
galaxy.tools.toolbox.tags
galaxy.tools.toolbox.watcher
galaxy.tools.util
galaxy.tools.util.galaxyops
galaxy.tools.util.maf_utilities
galaxy.tools.verify
galaxy.tools.verify.asserts
galaxy.tools.verify.asserts.tabular
galaxy.tools.verify.asserts.text
galaxy.tools.verify.asserts.xml
galaxy.tools.verify.test_data
galaxy.tools.wrappers
galaxy.tours
galaxy.util
galaxy.util.aliaspickler
galaxy.util.biostar
galaxy.util.bunch
galaxy.util.checkers
galaxy.util.compression_utils
galaxy.util.dbkeys
galaxy.util.dictifiable
galaxy.util.expressions
galaxy.util.filelock
galaxy.util.handlers
galaxy.util.hash_util
galaxy.util.heartbeat
galaxy.util.image_util
galaxy.util.inflection
galaxy.util.json
galaxy.util.jstree
galaxy.util.lazy_process
galaxy.util.none_like
galaxy.util.object_wrapper
galaxy.util.odict
galaxy.util.oset
galaxy.util.pastescript
galaxy.util.pastescript.loadwsgi
galaxy.util.pastescript.serve
galaxy.util.permutations
galaxy.util.plugin_config
galaxy.util.properties
galaxy.util.sanitize_html
galaxy.util.simplegraph
galaxy.util.sleeper
galaxy.util.sockets
galaxy.util.specs
galaxy.util.sqlite
galaxy.util.streamball
galaxy.util.submodules
galaxy.util.template
galaxy.util.topsort
galaxy.util.ucsc
galaxy.util.validation
galaxy.util.xml_macros
galaxy.version
galaxy.visualization
galaxy.visualization.data_providers
galaxy.visualization.data_providers.basic
galaxy.visualization.data_providers.cigar
galaxy.visualization.data_providers.genome
galaxy.visualization.data_providers.phyloviz
galaxy.visualization.data_providers.phyloviz.baseparser
galaxy.visualization.data_providers.phyloviz.newickparser
galaxy.visualization.data_providers.phyloviz.nexusparser
galaxy.visualization.data_providers.phyloviz.phyloxmlparser
galaxy.visualization.data_providers.registry
galaxy.visualization.genome
galaxy.visualization.genomes
galaxy.visualization.plugins
galaxy.visualization.plugins.config_parser
galaxy.visualization.plugins.plugin
galaxy.visualization.plugins.registry
galaxy.visualization.plugins.resource_parser
galaxy.visualization.plugins.utils
galaxy.visualization.tracks
galaxy.web
galaxy.web.base
galaxy.web.base.controller
galaxy.web.buildapp
galaxy.web.form_builder
galaxy.web.formatting
galaxy.web.framework
galaxy.web.framework.base
galaxy.web.framework.decorators
galaxy.web.framework.helpers
galaxy.web.framework.helpers.grids
galaxy.web.framework.middleware
galaxy.web.framework.middleware.batch
galaxy.web.framework.middleware.error
galaxy.web.framework.middleware.graphite
galaxy.web.framework.middleware.profile
galaxy.web.framework.middleware.remoteuser
galaxy.web.framework.middleware.request_id
galaxy.web.framework.middleware.sentry
galaxy.web.framework.middleware.static
galaxy.web.framework.middleware.statsd
galaxy.web.framework.middleware.translogger
galaxy.web.framework.middleware.xforwardedhost
galaxy.web.framework.openid_manager
galaxy.web.framework.webapp
galaxy.web.params
galaxy.web.proxy
galaxy.web.security
galaxy.web.stack
galaxy.webapps
galaxy.webapps.galaxy
galaxy.webapps.galaxy.api
galaxy.webapps.galaxy.api.annotations
galaxy.webapps.galaxy.api.authenticate
galaxy.webapps.galaxy.api.configuration
galaxy.webapps.galaxy.api.dataset_collections
galaxy.webapps.galaxy.api.datasets
galaxy.webapps.galaxy.api.datatypes
galaxy.webapps.galaxy.api.extended_metadata
galaxy.webapps.galaxy.api.folder_contents
galaxy.webapps.galaxy.api.folders
galaxy.webapps.galaxy.api.forms
galaxy.webapps.galaxy.api.genomes
galaxy.webapps.galaxy.api.group_roles
galaxy.webapps.galaxy.api.group_users
galaxy.webapps.galaxy.api.groups
galaxy.webapps.galaxy.api.histories
galaxy.webapps.galaxy.api.history_contents
galaxy.webapps.galaxy.api.item_tags
galaxy.webapps.galaxy.api.job_files
galaxy.webapps.galaxy.api.jobs
galaxy.webapps.galaxy.api.libraries
galaxy.webapps.galaxy.api.library_contents
galaxy.webapps.galaxy.api.metrics
galaxy.webapps.galaxy.api.page_revisions
galaxy.webapps.galaxy.api.pages
galaxy.webapps.galaxy.api.provenance
galaxy.webapps.galaxy.api.quotas
galaxy.webapps.galaxy.api.remote_files
galaxy.webapps.galaxy.api.roles
galaxy.webapps.galaxy.api.search
galaxy.webapps.galaxy.api.tool_data
galaxy.webapps.galaxy.api.tool_dependencies
galaxy.webapps.galaxy.api.tool_shed_repositories
galaxy.webapps.galaxy.api.tools
galaxy.webapps.galaxy.api.toolshed
galaxy.webapps.galaxy.api.tours
galaxy.webapps.galaxy.api.users
galaxy.webapps.galaxy.api.visualizations
galaxy.webapps.galaxy.api.webhooks
galaxy.webapps.galaxy.api.workflows
galaxy.webapps.galaxy.buildapp
galaxy.webapps.galaxy.config_watchers
galaxy.webapps.galaxy.controllers
galaxy.webapps.galaxy.controllers.admin
galaxy.webapps.galaxy.controllers.admin_toolshed
galaxy.webapps.galaxy.controllers.async
galaxy.webapps.galaxy.controllers.biostar
galaxy.webapps.galaxy.controllers.data_manager
galaxy.webapps.galaxy.controllers.dataset
galaxy.webapps.galaxy.controllers.error
galaxy.webapps.galaxy.controllers.forms
galaxy.webapps.galaxy.controllers.history
galaxy.webapps.galaxy.controllers.interactive_environments
galaxy.webapps.galaxy.controllers.library
galaxy.webapps.galaxy.controllers.page
galaxy.webapps.galaxy.controllers.root
galaxy.webapps.galaxy.controllers.tag
galaxy.webapps.galaxy.controllers.tool_runner
galaxy.webapps.galaxy.controllers.user
galaxy.webapps.galaxy.controllers.userskeys
galaxy.webapps.galaxy.controllers.visualization
galaxy.webapps.galaxy.controllers.workflow
galaxy.webapps.reports
galaxy.webapps.reports.app
galaxy.webapps.reports.buildapp
galaxy.webapps.reports.config
galaxy.webapps.reports.controllers
galaxy.webapps.reports.controllers.history
galaxy.webapps.reports.controllers.home
galaxy.webapps.reports.controllers.jobs
galaxy.webapps.reports.controllers.query
galaxy.webapps.reports.controllers.root
galaxy.webapps.reports.controllers.system
galaxy.webapps.reports.controllers.tools
galaxy.webapps.reports.controllers.users
galaxy.webapps.reports.controllers.workflows
galaxy.webapps.tool_shed
galaxy.webapps.tool_shed.api
galaxy.webapps.tool_shed.api.authenticate
galaxy.webapps.tool_shed.api.categories
galaxy.webapps.tool_shed.api.configuration
galaxy.webapps.tool_shed.api.groups
galaxy.webapps.tool_shed.api.repositories
galaxy.webapps.tool_shed.api.repository_revisions
galaxy.webapps.tool_shed.api.tools
galaxy.webapps.tool_shed.api.users
galaxy.webapps.tool_shed.app
galaxy.webapps.tool_shed.buildapp
galaxy.webapps.tool_shed.config
galaxy.webapps.tool_shed.controllers
galaxy.webapps.tool_shed.controllers.admin
galaxy.webapps.tool_shed.controllers.groups
galaxy.webapps.tool_shed.controllers.hg
galaxy.webapps.tool_shed.controllers.repository
galaxy.webapps.tool_shed.controllers.repository_review
galaxy.webapps.tool_shed.controllers.upload
galaxy.webapps.tool_shed.controllers.user
galaxy.webapps.tool_shed.framework
galaxy.webapps.tool_shed.framework.middleware
galaxy.webapps.tool_shed.framework.middleware.remoteuser
galaxy.webapps.tool_shed.model
galaxy.webapps.tool_shed.model.mapping
galaxy.webapps.tool_shed.model.migrate
galaxy.webapps.tool_shed.model.migrate.check
galaxy.webapps.tool_shed.search
galaxy.webapps.tool_shed.search.repo_search
galaxy.webapps.tool_shed.search.tool_search
galaxy.webapps.tool_shed.security
galaxy.webapps.tool_shed.util
galaxy.webapps.tool_shed.util.hgweb_config
galaxy.webapps.tool_shed.util.ratings_util
galaxy.webapps.tool_shed.util.shed_statistics
galaxy.webapps.util
galaxy.webhooks
galaxy.work
galaxy.work.context
galaxy.workflow
galaxy.workflow.extract
galaxy.workflow.modules
galaxy.workflow.render
galaxy.workflow.run
galaxy.workflow.run_request
galaxy.workflow.schedulers
galaxy.workflow.schedulers.core
galaxy.workflow.scheduling_manager
galaxy.workflow.steps
galaxy_ext
galaxy_ext.metadata
galaxy_ext.metadata.set_metadata
log_tempfile
mimeparse
psyco_full
tool_shed
tool_shed.capsule
tool_shed.capsule.capsule_manager
tool_shed.dependencies
tool_shed.dependencies.attribute_handlers
tool_shed.dependencies.repository
tool_shed.dependencies.repository.relation_builder
tool_shed.dependencies.tool
tool_shed.dependencies.tool.tag_attribute_handler
tool_shed.galaxy_install
tool_shed.galaxy_install.datatypes
tool_shed.galaxy_install.datatypes.custom_datatype_manager
tool_shed.galaxy_install.dependency_display
tool_shed.galaxy_install.grids
tool_shed.galaxy_install.grids.admin_toolshed_grids
tool_shed.galaxy_install.install_manager
tool_shed.galaxy_install.installed_repository_manager
tool_shed.galaxy_install.metadata
tool_shed.galaxy_install.metadata.installed_repository_metadata_manager
tool_shed.galaxy_install.migrate
tool_shed.galaxy_install.migrate.check
tool_shed.galaxy_install.migrate.common
tool_shed.galaxy_install.repair_repository_manager
tool_shed.galaxy_install.repository_dependencies
tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager
tool_shed.galaxy_install.tool_dependencies
tool_shed.galaxy_install.tool_dependencies.env_manager
tool_shed.galaxy_install.tool_dependencies.recipe
tool_shed.galaxy_install.tool_dependencies.recipe.asynchronous_reader
tool_shed.galaxy_install.tool_dependencies.recipe.env_file_builder
tool_shed.galaxy_install.tool_dependencies.recipe.install_environment
tool_shed.galaxy_install.tool_dependencies.recipe.recipe_manager
tool_shed.galaxy_install.tool_dependencies.recipe.step_handler
tool_shed.galaxy_install.tool_dependencies.recipe.tag_handler
tool_shed.galaxy_install.tool_migration_manager
tool_shed.galaxy_install.tools
tool_shed.galaxy_install.tools.data_manager
tool_shed.galaxy_install.tools.tool_panel_manager
tool_shed.galaxy_install.update_repository_manager
tool_shed.galaxy_install.utility_containers
tool_shed.grids
tool_shed.grids.admin_grids
tool_shed.grids.repository_grid_filter_manager
tool_shed.grids.repository_grids
tool_shed.grids.repository_review_grids
tool_shed.grids.util
tool_shed.managers
tool_shed.managers.groups
tool_shed.managers.repositories
tool_shed.metadata
tool_shed.metadata.metadata_generator
tool_shed.metadata.repository_metadata_manager
tool_shed.repository_registry
tool_shed.repository_types
tool_shed.repository_types.metadata
tool_shed.repository_types.registry
tool_shed.repository_types.repository_suite_definition
tool_shed.repository_types.tool_dependency_definition
tool_shed.repository_types.unrestricted
tool_shed.repository_types.util
tool_shed.tool_shed_registry
tool_shed.tools
tool_shed.tools.data_table_manager
tool_shed.tools.tool_validator
tool_shed.tools.tool_version_manager
tool_shed.util
tool_shed.util.basic_util
tool_shed.util.commit_util
tool_shed.util.common_util
tool_shed.util.container_util
tool_shed.util.encoding_util
tool_shed.util.hg_util
tool_shed.util.metadata_util
tool_shed.util.readme_util
tool_shed.util.repository_content_util
tool_shed.util.repository_util
tool_shed.util.review_util
tool_shed.util.search_util
tool_shed.util.shed_util_common
tool_shed.util.tool_dependency_util
tool_shed.util.tool_util
tool_shed.util.web_util
tool_shed.util.workflow_util
tool_shed.util.xml_util
tool_shed.utility_containers
tool_shed.utility_containers.utility_container_manager
