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galaxy
galaxy.actions
galaxy.actions.admin
galaxy.actions.library
galaxy.app
galaxy.auth
galaxy.auth.providers
galaxy.auth.providers.alwaysreject
galaxy.auth.providers.ldap_ad
galaxy.auth.providers.localdb
galaxy.auth.providers.pam_auth
galaxy.auth.util
galaxy.authnz
galaxy.authnz.custos_authnz
galaxy.authnz.managers
galaxy.authnz.psa_authnz
galaxy.config
galaxy.config.script
galaxy.config_watchers
galaxy.containers
galaxy.containers.docker
galaxy.containers.docker_decorators
galaxy.containers.docker_model
galaxy.containers.docker_swarm
galaxy.datatypes
galaxy.datatypes.annotation
galaxy.datatypes.anvio
galaxy.datatypes.assembly
galaxy.datatypes.binary
galaxy.datatypes.blast
galaxy.datatypes.checkers
galaxy.datatypes.chrominfo
galaxy.datatypes.constructive_solid_geometry
galaxy.datatypes.converters
galaxy.datatypes.converters.bed_to_gff_converter
galaxy.datatypes.converters.bgzip
galaxy.datatypes.converters.cram_to_bam
galaxy.datatypes.converters.fasta_to_len
galaxy.datatypes.converters.fasta_to_tabular_converter
galaxy.datatypes.converters.fastq_to_fqtoc
galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
galaxy.datatypes.converters.fastqsolexa_to_qual_converter
galaxy.datatypes.converters.gff_to_bed_converter
galaxy.datatypes.converters.gff_to_interval_index_converter
galaxy.datatypes.converters.interval_to_bed_converter
galaxy.datatypes.converters.interval_to_bedstrict_converter
galaxy.datatypes.converters.interval_to_fli
galaxy.datatypes.converters.interval_to_interval_index_converter
galaxy.datatypes.converters.interval_to_tabix_converter
galaxy.datatypes.converters.lped_to_fped_converter
galaxy.datatypes.converters.lped_to_pbed_converter
galaxy.datatypes.converters.maf_to_fasta_converter
galaxy.datatypes.converters.maf_to_interval_converter
galaxy.datatypes.converters.pbed_ldreduced_converter
galaxy.datatypes.converters.pbed_to_lped_converter
galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
galaxy.datatypes.converters.pileup_to_interval_index_converter
galaxy.datatypes.converters.ref_to_seq_taxonomy_converter
galaxy.datatypes.converters.tabular_csv
galaxy.datatypes.converters.tabular_to_dbnsfp
galaxy.datatypes.converters.vcf_to_interval_index_converter
galaxy.datatypes.converters.vcf_to_vcf_bgzip
galaxy.datatypes.converters.wiggle_to_simple_converter
galaxy.datatypes.coverage
galaxy.datatypes.data
galaxy.datatypes.dataproviders
galaxy.datatypes.dataproviders.base
galaxy.datatypes.dataproviders.chunk
galaxy.datatypes.dataproviders.column
galaxy.datatypes.dataproviders.dataset
galaxy.datatypes.dataproviders.decorators
galaxy.datatypes.dataproviders.exceptions
galaxy.datatypes.dataproviders.external
galaxy.datatypes.dataproviders.hierarchy
galaxy.datatypes.dataproviders.line
galaxy.datatypes.display_applications
galaxy.datatypes.display_applications.application
galaxy.datatypes.display_applications.parameters
galaxy.datatypes.display_applications.util
galaxy.datatypes.genetics
galaxy.datatypes.gis
galaxy.datatypes.graph
galaxy.datatypes.images
galaxy.datatypes.interval
galaxy.datatypes.isa
galaxy.datatypes.metadata
galaxy.datatypes.microarrays
galaxy.datatypes.molecules
galaxy.datatypes.mothur
galaxy.datatypes.msa
galaxy.datatypes.neo4j
galaxy.datatypes.ngsindex
galaxy.datatypes.phylip
galaxy.datatypes.plant_tribes
galaxy.datatypes.proteomics
galaxy.datatypes.qualityscore
galaxy.datatypes.registry
galaxy.datatypes.sequence
galaxy.datatypes.sniff
galaxy.datatypes.spaln
galaxy.datatypes.tabular
galaxy.datatypes.text
galaxy.datatypes.tracks
galaxy.datatypes.triples
galaxy.datatypes.upload_util
galaxy.datatypes.util
galaxy.datatypes.util.generic_util
galaxy.datatypes.util.gff_util
galaxy.datatypes.util.maf_utilities
galaxy.datatypes.xml
galaxy.dependencies
galaxy.eggs
galaxy.exceptions
galaxy.exceptions.error_codes
galaxy.forms
galaxy.forms.forms
galaxy.job_execution
galaxy.job_execution.datasets
galaxy.job_execution.output_collect
galaxy.job_metrics
galaxy.job_metrics.collectl
galaxy.job_metrics.collectl.cli
galaxy.job_metrics.collectl.processes
galaxy.job_metrics.collectl.stats
galaxy.job_metrics.collectl.subsystems
galaxy.job_metrics.formatting
galaxy.job_metrics.instrumenters
galaxy.job_metrics.instrumenters.cgroup
galaxy.job_metrics.instrumenters.collectl
galaxy.job_metrics.instrumenters.core
galaxy.job_metrics.instrumenters.cpuinfo
galaxy.job_metrics.instrumenters.env
galaxy.job_metrics.instrumenters.hostname
galaxy.job_metrics.instrumenters.meminfo
galaxy.job_metrics.instrumenters.uname
galaxy.jobs
galaxy.jobs.actions
galaxy.jobs.actions.post
galaxy.jobs.command_factory
galaxy.jobs.dynamic_tool_destination
galaxy.jobs.handler
galaxy.jobs.manager
galaxy.jobs.mapper
galaxy.jobs.rule_helper
galaxy.jobs.rules
galaxy.jobs.runners
galaxy.jobs.runners.chronos
galaxy.jobs.runners.cli
galaxy.jobs.runners.condor
galaxy.jobs.runners.drmaa
galaxy.jobs.runners.godocker
galaxy.jobs.runners.kubernetes
galaxy.jobs.runners.local
galaxy.jobs.runners.pbs
galaxy.jobs.runners.pulsar
galaxy.jobs.runners.slurm
galaxy.jobs.runners.state_handler_factory
galaxy.jobs.runners.state_handlers
galaxy.jobs.runners.state_handlers.resubmit
galaxy.jobs.runners.tasks
galaxy.jobs.runners.univa
galaxy.jobs.runners.util
galaxy.jobs.runners.util.cli
galaxy.jobs.runners.util.cli.factory
galaxy.jobs.runners.util.cli.job
galaxy.jobs.runners.util.cli.job.lsf
galaxy.jobs.runners.util.cli.job.slurm
galaxy.jobs.runners.util.cli.job.slurm_torque
galaxy.jobs.runners.util.cli.job.torque
galaxy.jobs.runners.util.cli.shell
galaxy.jobs.runners.util.cli.shell.local
galaxy.jobs.runners.util.cli.shell.rsh
galaxy.jobs.runners.util.condor
galaxy.jobs.runners.util.env
galaxy.jobs.runners.util.external
galaxy.jobs.runners.util.job_script
galaxy.jobs.runners.util.kill
galaxy.jobs.runners.util.pykube_util
galaxy.jobs.runners.util.sudo
galaxy.jobs.splitters
galaxy.jobs.splitters.basic
galaxy.jobs.splitters.multi
galaxy.jobs.stock_rules
galaxy.jobs.transfer_manager
galaxy.main
galaxy.managers
galaxy.managers.annotatable
galaxy.managers.api_keys
galaxy.managers.base
galaxy.managers.citations
galaxy.managers.cloud
galaxy.managers.cloudauthzs
galaxy.managers.collections
galaxy.managers.collections_util
galaxy.managers.configuration
galaxy.managers.containers
galaxy.managers.context
galaxy.managers.datasets
galaxy.managers.deletable
galaxy.managers.folders
galaxy.managers.hdas
galaxy.managers.hdcas
galaxy.managers.histories
galaxy.managers.history_contents
galaxy.managers.jobs
galaxy.managers.lddas
galaxy.managers.libraries
galaxy.managers.library_datasets
galaxy.managers.pages
galaxy.managers.ratable
galaxy.managers.rbac_secured
galaxy.managers.roles
galaxy.managers.secured
galaxy.managers.sharable
galaxy.managers.taggable
galaxy.managers.tools
galaxy.managers.users
galaxy.managers.visualizations
galaxy.managers.workflows
galaxy.metadata
galaxy.metadata.set_metadata
galaxy.model
galaxy.model.base
galaxy.model.custom_types
galaxy.model.database_heartbeat
galaxy.model.dataset_collections
galaxy.model.dataset_collections.builder
galaxy.model.dataset_collections.matching
galaxy.model.dataset_collections.registry
galaxy.model.dataset_collections.structure
galaxy.model.dataset_collections.subcollections
galaxy.model.dataset_collections.type_description
galaxy.model.dataset_collections.types
galaxy.model.dataset_collections.types.list
galaxy.model.dataset_collections.types.paired
galaxy.model.item_attrs
galaxy.model.mapping
galaxy.model.metadata
galaxy.model.migrate
galaxy.model.migrate.check
galaxy.model.migrate.versions
galaxy.model.migrate.versions.0001_initial_tables
galaxy.model.migrate.versions.0002_metadata_file_table
galaxy.model.migrate.versions.0003_security_and_libraries
galaxy.model.migrate.versions.0004_indexes_and_defaults
galaxy.model.migrate.versions.0005_cleanup_datasets_fix
galaxy.model.migrate.versions.0006_change_qual_datatype
galaxy.model.migrate.versions.0007_sharing_histories
galaxy.model.migrate.versions.0008_galaxy_forms
galaxy.model.migrate.versions.0009_request_table
galaxy.model.migrate.versions.0010_hda_display_at_authz_table
galaxy.model.migrate.versions.0011_v0010_mysql_index_fix
galaxy.model.migrate.versions.0012_user_address
galaxy.model.migrate.versions.0013_change_lib_item_templates_to_forms
galaxy.model.migrate.versions.0014_pages
galaxy.model.migrate.versions.0015_tagging
galaxy.model.migrate.versions.0016_v0015_mysql_index_fix
galaxy.model.migrate.versions.0017_library_item_indexes
galaxy.model.migrate.versions.0018_ordered_tags_and_page_tags
galaxy.model.migrate.versions.0019_request_library_folder
galaxy.model.migrate.versions.0020_library_upload_job
galaxy.model.migrate.versions.0021_user_prefs
galaxy.model.migrate.versions.0022_visualization_tables
galaxy.model.migrate.versions.0023_page_published_and_deleted_columns
galaxy.model.migrate.versions.0024_page_slug_unique_constraint
galaxy.model.migrate.versions.0025_user_info
galaxy.model.migrate.versions.0026_cloud_tables
galaxy.model.migrate.versions.0027_request_events
galaxy.model.migrate.versions.0028_external_metadata_file_override
galaxy.model.migrate.versions.0029_user_actions
galaxy.model.migrate.versions.0030_history_slug_column
galaxy.model.migrate.versions.0031_community_and_workflow_tags
galaxy.model.migrate.versions.0032_stored_workflow_slug_column
galaxy.model.migrate.versions.0033_published_cols_for_histories_and_workflows
galaxy.model.migrate.versions.0034_page_user_share_association
galaxy.model.migrate.versions.0035_item_annotations_and_workflow_step_tags
galaxy.model.migrate.versions.0036_add_deleted_column_to_library_template_assoc_tables
galaxy.model.migrate.versions.0037_samples_library
galaxy.model.migrate.versions.0038_add_inheritable_column_to_library_template_assoc_tables
galaxy.model.migrate.versions.0039_add_synopsis_column_to_library_table
galaxy.model.migrate.versions.0040_page_annotations
galaxy.model.migrate.versions.0041_workflow_invocation
galaxy.model.migrate.versions.0042_workflow_invocation_fix
galaxy.model.migrate.versions.0043_visualization_sharing_tagging_annotating
galaxy.model.migrate.versions.0044_add_notify_column_to_request_table
galaxy.model.migrate.versions.0045_request_type_permissions_table
galaxy.model.migrate.versions.0046_post_job_actions
galaxy.model.migrate.versions.0047_job_table_user_id_column
galaxy.model.migrate.versions.0048_dataset_instance_state_column
galaxy.model.migrate.versions.0049_api_keys_table
galaxy.model.migrate.versions.0050_drop_cloud_tables
galaxy.model.migrate.versions.0051_imported_col_for_jobs_table
galaxy.model.migrate.versions.0052_sample_dataset_table
galaxy.model.migrate.versions.0053_item_ratings
galaxy.model.migrate.versions.0054_visualization_dbkey
galaxy.model.migrate.versions.0055_add_pja_assoc_for_jobs
galaxy.model.migrate.versions.0056_workflow_outputs
galaxy.model.migrate.versions.0057_request_notify
galaxy.model.migrate.versions.0058_history_import_export
galaxy.model.migrate.versions.0059_sample_dataset_file_path
galaxy.model.migrate.versions.0060_history_archive_import
galaxy.model.migrate.versions.0061_tasks
galaxy.model.migrate.versions.0062_user_openid_table
galaxy.model.migrate.versions.0063_sequencer_table
galaxy.model.migrate.versions.0064_add_run_and_sample_run_association_tables
galaxy.model.migrate.versions.0065_add_name_to_form_fields_and_values
galaxy.model.migrate.versions.0066_deferred_job_and_transfer_job_tables
galaxy.model.migrate.versions.0067_populate_sequencer_table
galaxy.model.migrate.versions.0068_rename_sequencer_to_external_services
galaxy.model.migrate.versions.0069_rename_sequencer_form_type
galaxy.model.migrate.versions.0070_add_info_column_to_deferred_job_table
galaxy.model.migrate.versions.0071_add_history_and_workflow_to_sample
galaxy.model.migrate.versions.0072_add_pid_and_socket_columns_to_transfer_job_table
galaxy.model.migrate.versions.0073_add_ldda_to_implicit_conversion_table
galaxy.model.migrate.versions.0074_add_purged_column_to_library_dataset_table
galaxy.model.migrate.versions.0075_add_subindex_column_to_run_table
galaxy.model.migrate.versions.0076_fix_form_values_data_corruption
galaxy.model.migrate.versions.0077_create_tool_tag_association_table
galaxy.model.migrate.versions.0078_add_columns_for_disk_usage_accounting
galaxy.model.migrate.versions.0079_input_library_to_job_table
galaxy.model.migrate.versions.0080_quota_tables
galaxy.model.migrate.versions.0081_add_tool_version_to_hda_ldda
galaxy.model.migrate.versions.0082_add_tool_shed_repository_table
galaxy.model.migrate.versions.0083_add_prepare_files_to_task
galaxy.model.migrate.versions.0084_add_ldda_id_to_implicit_conversion_table
galaxy.model.migrate.versions.0085_add_task_info
galaxy.model.migrate.versions.0086_add_tool_shed_repository_table_columns
galaxy.model.migrate.versions.0087_tool_id_guid_map_table
galaxy.model.migrate.versions.0088_add_installed_changeset_revison_column
galaxy.model.migrate.versions.0089_add_object_store_id_columns
galaxy.model.migrate.versions.0090_add_tool_shed_repository_table_columns
galaxy.model.migrate.versions.0091_add_tool_version_tables
galaxy.model.migrate.versions.0092_add_migrate_tools_table
galaxy.model.migrate.versions.0093_add_job_params_col
galaxy.model.migrate.versions.0094_add_job_handler_col
galaxy.model.migrate.versions.0095_hda_subsets
galaxy.model.migrate.versions.0096_openid_provider
galaxy.model.migrate.versions.0097_add_ctx_rev_column
galaxy.model.migrate.versions.0098_genome_index_tool_data_table
galaxy.model.migrate.versions.0099_add_tool_dependency_table
galaxy.model.migrate.versions.0100_alter_tool_dependency_table_version_column
galaxy.model.migrate.versions.0101_drop_installed_changeset_revision_column
galaxy.model.migrate.versions.0102_add_tool_dependency_status_columns
galaxy.model.migrate.versions.0103_add_tool_shed_repository_status_columns
galaxy.model.migrate.versions.0104_update_genome_downloader_job_parameters
galaxy.model.migrate.versions.0105_add_cleanup_event_table
galaxy.model.migrate.versions.0106_add_missing_indexes
galaxy.model.migrate.versions.0107_add_exit_code_to_job_and_task
galaxy.model.migrate.versions.0108_add_extended_metadata
galaxy.model.migrate.versions.0109_add_repository_dependency_tables
galaxy.model.migrate.versions.0110_add_dataset_uuid
galaxy.model.migrate.versions.0111_add_job_destinations
galaxy.model.migrate.versions.0112_add_data_manager_history_association_and_data_manager_job_association_tables
galaxy.model.migrate.versions.0113_update_migrate_tools_table
galaxy.model.migrate.versions.0114_update_migrate_tools_table_again
galaxy.model.migrate.versions.0115_longer_user_password_field
galaxy.model.migrate.versions.0116_drop_update_available_col_add_tool_shed_status_col
galaxy.model.migrate.versions.0117_add_user_activation
galaxy.model.migrate.versions.0118_add_hda_extended_metadata
galaxy.model.migrate.versions.0119_job_metrics
galaxy.model.migrate.versions.0120_dataset_collections
galaxy.model.migrate.versions.0121_workflow_uuids
galaxy.model.migrate.versions.0122_grow_mysql_blobs
galaxy.model.migrate.versions.0123_add_workflow_request_tables
galaxy.model.migrate.versions.0124_job_state_history
galaxy.model.migrate.versions.0125_workflow_step_tracking
galaxy.model.migrate.versions.0126_password_reset
galaxy.model.migrate.versions.0127_output_collection_adjustments
galaxy.model.migrate.versions.0128_session_timeout
galaxy.model.migrate.versions.0129_job_external_output_metadata_validity
galaxy.model.migrate.versions.0130_change_pref_datatype
galaxy.model.migrate.versions.0131_subworkflow_and_input_parameter_modules
galaxy.model.migrate.versions.0132_add_lastpasswordchange_to_user
galaxy.model.migrate.versions.0133_add_dependency_column_to_job
galaxy.model.migrate.versions.0134_hda_set_deleted_if_purged
galaxy.model.migrate.versions.0135_add_library_tags
galaxy.model.migrate.versions.0136_collection_and_workflow_state
galaxy.model.migrate.versions.0137_add_copied_from_job_id_column
galaxy.model.migrate.versions.0138_add_hda_version
galaxy.model.migrate.versions.0139_add_history_dataset_association_history_table
galaxy.model.migrate.versions.0140_add_dataset_version_to_job_to_input_dataset_association_table
galaxy.model.migrate.versions.0141_add_oidc_tables
galaxy.model.migrate.versions.0142_change_numeric_metric_precision
galaxy.model.migrate.versions.0143_add_cloudauthz_tables
galaxy.model.migrate.versions.0144_add_cleanup_event_user_table
galaxy.model.migrate.versions.0145_add_workflow_step_input
galaxy.model.migrate.versions.0146_workflow_paths
galaxy.model.migrate.versions.0147_job_messages
galaxy.model.migrate.versions.0148_add_checksum_table
galaxy.model.migrate.versions.0149_dynamic_tools
galaxy.model.migrate.versions.0150_add_create_time_field_for_cloudauthz
galaxy.model.migrate.versions.0151_add_worker_process
galaxy.model.migrate.versions.0152_add_metadata_file_uuid
galaxy.model.migrate.versions.0153_add_custos_authnz_token_table
galaxy.model.migrate.versions.0154_created_from_basename
galaxy.model.migrate.versions.util
galaxy.model.none_like
galaxy.model.orm
galaxy.model.orm.engine_factory
galaxy.model.orm.logging_connection_proxy
galaxy.model.orm.now
galaxy.model.orm.scripts
galaxy.model.search
galaxy.model.security
galaxy.model.store
galaxy.model.store.build_objects
galaxy.model.store.discover
galaxy.model.tags
galaxy.model.tool_shed_install
galaxy.model.tool_shed_install.mapping
galaxy.model.tool_shed_install.migrate
galaxy.model.tool_shed_install.migrate.check
galaxy.objectstore
galaxy.objectstore.azure_blob
galaxy.objectstore.cloud
galaxy.objectstore.pithos
galaxy.objectstore.pulsar
galaxy.objectstore.rods
galaxy.objectstore.s3
galaxy.objectstore.s3_multipart_upload
galaxy.openid
galaxy.openid.openid_manager
galaxy.openid.providers
galaxy.queue_worker
galaxy.queues
galaxy.quota
galaxy.security
galaxy.security.idencoding
galaxy.security.passwords
galaxy.security.validate_user_input
galaxy.selenium
galaxy.selenium.cli
galaxy.selenium.components
galaxy.selenium.data
galaxy.selenium.driver_factory
galaxy.selenium.has_driver
galaxy.selenium.navigates_galaxy
galaxy.selenium.scripts
galaxy.selenium.scripts.dump_tour
galaxy.selenium.sizzle
galaxy.selenium.smart_components
galaxy.tool_util
galaxy.tool_util.cwl
galaxy.tool_util.cwl.cwltool_deps
galaxy.tool_util.cwl.parser
galaxy.tool_util.cwl.representation
galaxy.tool_util.cwl.runtime_actions
galaxy.tool_util.cwl.schema
galaxy.tool_util.cwl.util
galaxy.tool_util.deps
galaxy.tool_util.deps.brew_exts
galaxy.tool_util.deps.brew_util
galaxy.tool_util.deps.commands
galaxy.tool_util.deps.conda_compat
galaxy.tool_util.deps.conda_util
galaxy.tool_util.deps.container_classes
galaxy.tool_util.deps.container_resolvers
galaxy.tool_util.deps.container_resolvers.explicit
galaxy.tool_util.deps.container_resolvers.mulled
galaxy.tool_util.deps.containers
galaxy.tool_util.deps.dependencies
galaxy.tool_util.deps.docker_util
galaxy.tool_util.deps.dockerfiles
galaxy.tool_util.deps.installable
galaxy.tool_util.deps.mulled
galaxy.tool_util.deps.mulled.mulled_build
galaxy.tool_util.deps.mulled.mulled_build_channel
galaxy.tool_util.deps.mulled.mulled_build_files
galaxy.tool_util.deps.mulled.mulled_build_tool
galaxy.tool_util.deps.mulled.mulled_search
galaxy.tool_util.deps.mulled.util
galaxy.tool_util.deps.requirements
galaxy.tool_util.deps.resolvers
galaxy.tool_util.deps.resolvers.brewed_tool_shed_packages
galaxy.tool_util.deps.resolvers.conda
galaxy.tool_util.deps.resolvers.galaxy_packages
galaxy.tool_util.deps.resolvers.homebrew
galaxy.tool_util.deps.resolvers.lmod
galaxy.tool_util.deps.resolvers.modules
galaxy.tool_util.deps.resolvers.resolver_mixins
galaxy.tool_util.deps.resolvers.tool_shed_packages
galaxy.tool_util.deps.resolvers.unlinked_tool_shed_packages
galaxy.tool_util.deps.singularity_util
galaxy.tool_util.deps.views
galaxy.tool_util.fetcher
galaxy.tool_util.lint
galaxy.tool_util.linters
galaxy.tool_util.linters.citations
galaxy.tool_util.linters.command
galaxy.tool_util.linters.cwl
galaxy.tool_util.linters.general
galaxy.tool_util.linters.help
galaxy.tool_util.linters.inputs
galaxy.tool_util.linters.outputs
galaxy.tool_util.linters.stdio
galaxy.tool_util.linters.tests
galaxy.tool_util.linters.xml_order
galaxy.tool_util.loader
galaxy.tool_util.loader_directory
galaxy.tool_util.locations
galaxy.tool_util.locations.dockstore
galaxy.tool_util.locations.file
galaxy.tool_util.locations.http
galaxy.tool_util.output_checker
galaxy.tool_util.parser
galaxy.tool_util.parser.cwl
galaxy.tool_util.parser.factory
galaxy.tool_util.parser.interface
galaxy.tool_util.parser.output_actions
galaxy.tool_util.parser.output_collection_def
galaxy.tool_util.parser.output_objects
galaxy.tool_util.parser.util
galaxy.tool_util.parser.xml
galaxy.tool_util.parser.yaml
galaxy.tool_util.provided_metadata
galaxy.tool_util.verify
galaxy.tool_util.verify.asserts
galaxy.tool_util.verify.asserts.archive
galaxy.tool_util.verify.asserts.hdf5
galaxy.tool_util.verify.asserts.tabular
galaxy.tool_util.verify.asserts.text
galaxy.tool_util.verify.asserts.xml
galaxy.tool_util.verify.interactor
galaxy.tool_util.verify.script
galaxy.tool_util.verify.test_data
galaxy.tools
galaxy.tools.actions
galaxy.tools.actions.data_manager
galaxy.tools.actions.data_source
galaxy.tools.actions.history_imp_exp
galaxy.tools.actions.metadata
galaxy.tools.actions.model_operations
galaxy.tools.actions.upload
galaxy.tools.actions.upload_common
galaxy.tools.cache
galaxy.tools.data
galaxy.tools.data_fetch
galaxy.tools.data_manager
galaxy.tools.data_manager.manager
galaxy.tools.error_reports
galaxy.tools.error_reports.plugins
galaxy.tools.error_reports.plugins.base_git
galaxy.tools.error_reports.plugins.email
galaxy.tools.error_reports.plugins.github
galaxy.tools.error_reports.plugins.gitlab
galaxy.tools.error_reports.plugins.influxdb
galaxy.tools.error_reports.plugins.json
galaxy.tools.error_reports.plugins.sentry
galaxy.tools.errors
galaxy.tools.evaluation
galaxy.tools.exception_handling
galaxy.tools.execute
galaxy.tools.expressions
galaxy.tools.expressions.evaluation
galaxy.tools.expressions.script
galaxy.tools.expressions.util
galaxy.tools.filters
galaxy.tools.imp_exp
galaxy.tools.imp_exp.export_history
galaxy.tools.imp_exp.unpack_tar_gz_archive
galaxy.tools.parameters
galaxy.tools.parameters.basic
galaxy.tools.parameters.dataset_matcher
galaxy.tools.parameters.dynamic_options
galaxy.tools.parameters.grouping
galaxy.tools.parameters.history_query
galaxy.tools.parameters.input_translation
galaxy.tools.parameters.meta
galaxy.tools.parameters.sanitize
galaxy.tools.parameters.validation
galaxy.tools.parameters.wrapped
galaxy.tools.parameters.wrapped_json
galaxy.tools.repositories
galaxy.tools.search
galaxy.tools.special_tools
galaxy.tools.test
galaxy.tools.toolbox
galaxy.tools.toolbox.base
galaxy.tools.toolbox.filters
galaxy.tools.toolbox.integrated_panel
galaxy.tools.toolbox.lineages
galaxy.tools.toolbox.lineages.factory
galaxy.tools.toolbox.lineages.interface
galaxy.tools.toolbox.panel
galaxy.tools.toolbox.parser
galaxy.tools.toolbox.tags
galaxy.tools.toolbox.watcher
galaxy.tools.util
galaxy.tools.util.galaxyops
galaxy.tools.util.maf_utilities
galaxy.tools.wrappers
galaxy.tours
galaxy.util
galaxy.util.aliaspickler
galaxy.util.bunch
galaxy.util.bytesize
galaxy.util.checkers
galaxy.util.compression_utils
galaxy.util.custom_logging
galaxy.util.custom_logging.fluent_log
galaxy.util.dbkeys
galaxy.util.dictifiable
galaxy.util.expressions
galaxy.util.facts
galaxy.util.filelock
galaxy.util.form_builder
galaxy.util.getargspec
galaxy.util.hash_util
galaxy.util.heartbeat
galaxy.util.image_util
galaxy.util.inflection
galaxy.util.json
galaxy.util.jstree
galaxy.util.lazy_process
galaxy.util.monitors
galaxy.util.object_wrapper
galaxy.util.odict
galaxy.util.oset
galaxy.util.pastescript
galaxy.util.pastescript.loadwsgi
galaxy.util.pastescript.serve
galaxy.util.path
galaxy.util.path.ntpath
galaxy.util.path.posixpath
galaxy.util.permutations
galaxy.util.plugin_config
galaxy.util.properties
galaxy.util.renamed_temporary_file
galaxy.util.rules_dsl
galaxy.util.sanitize_html
galaxy.util.script
galaxy.util.simplegraph
galaxy.util.sleeper
galaxy.util.sockets
galaxy.util.specs
galaxy.util.sqlite
galaxy.util.streamball
galaxy.util.submodules
galaxy.util.template
galaxy.util.tool_shed
galaxy.util.tool_shed.common_util
galaxy.util.tool_shed.encoding_util
galaxy.util.tool_shed.xml_util
galaxy.util.tool_version
galaxy.util.topsort
galaxy.util.ucsc
galaxy.util.validation
galaxy.util.watcher
galaxy.util.web_compat
galaxy.util.xml_macros
galaxy.version
galaxy.visualization
galaxy.visualization.data_providers
galaxy.visualization.data_providers.basic
galaxy.visualization.data_providers.cigar
galaxy.visualization.data_providers.genome
galaxy.visualization.data_providers.phyloviz
galaxy.visualization.data_providers.phyloviz.baseparser
galaxy.visualization.data_providers.phyloviz.newickparser
galaxy.visualization.data_providers.phyloviz.nexusparser
galaxy.visualization.data_providers.phyloviz.phyloxmlparser
galaxy.visualization.data_providers.registry
galaxy.visualization.genome
galaxy.visualization.genomes
galaxy.visualization.plugins
galaxy.visualization.plugins.config_parser
galaxy.visualization.plugins.interactive_environments
galaxy.visualization.plugins.plugin
galaxy.visualization.plugins.registry
galaxy.visualization.plugins.resource_parser
galaxy.visualization.plugins.utils
galaxy.visualization.tracks
galaxy.web
galaxy.web.buildapp
galaxy.web.form_builder
galaxy.web.formatting
galaxy.web.framework
galaxy.web.framework.base
galaxy.web.framework.decorators
galaxy.web.framework.helpers
galaxy.web.framework.helpers.grids
galaxy.web.framework.helpers.tags
galaxy.web.framework.middleware
galaxy.web.framework.middleware.batch
galaxy.web.framework.middleware.error
galaxy.web.framework.middleware.profile
galaxy.web.framework.middleware.remoteuser
galaxy.web.framework.middleware.request_id
galaxy.web.framework.middleware.sentry
galaxy.web.framework.middleware.sqldebug
galaxy.web.framework.middleware.static
galaxy.web.framework.middleware.statsd
galaxy.web.framework.middleware.translogger
galaxy.web.framework.middleware.xforwardedhost
galaxy.web.framework.webapp
galaxy.web.params
galaxy.web.proxy
galaxy.web_stack
galaxy.web_stack.handlers
galaxy.web_stack.message
galaxy.web_stack.transport
galaxy.webapps
galaxy.webapps.base
galaxy.webapps.base.controller
galaxy.webapps.galaxy
galaxy.webapps.galaxy.api
galaxy.webapps.galaxy.api.annotations
galaxy.webapps.galaxy.api.authenticate
galaxy.webapps.galaxy.api.cloud
galaxy.webapps.galaxy.api.cloudauthz
galaxy.webapps.galaxy.api.configuration
galaxy.webapps.galaxy.api.dataset_collections
galaxy.webapps.galaxy.api.datasets
galaxy.webapps.galaxy.api.datatypes
galaxy.webapps.galaxy.api.display_applications
galaxy.webapps.galaxy.api.dynamic_tools
galaxy.webapps.galaxy.api.extended_metadata
galaxy.webapps.galaxy.api.folder_contents
galaxy.webapps.galaxy.api.folders
galaxy.webapps.galaxy.api.forms
galaxy.webapps.galaxy.api.genomes
galaxy.webapps.galaxy.api.group_roles
galaxy.webapps.galaxy.api.group_users
galaxy.webapps.galaxy.api.groups
galaxy.webapps.galaxy.api.histories
galaxy.webapps.galaxy.api.history_contents
galaxy.webapps.galaxy.api.item_tags
galaxy.webapps.galaxy.api.job_files
galaxy.webapps.galaxy.api.jobs
galaxy.webapps.galaxy.api.libraries
galaxy.webapps.galaxy.api.library_contents
galaxy.webapps.galaxy.api.library_datasets
galaxy.webapps.galaxy.api.metrics
galaxy.webapps.galaxy.api.page_revisions
galaxy.webapps.galaxy.api.pages
galaxy.webapps.galaxy.api.plugins
galaxy.webapps.galaxy.api.provenance
galaxy.webapps.galaxy.api.quotas
galaxy.webapps.galaxy.api.remote_files
galaxy.webapps.galaxy.api.roles
galaxy.webapps.galaxy.api.search
galaxy.webapps.galaxy.api.tool_data
galaxy.webapps.galaxy.api.tool_dependencies
galaxy.webapps.galaxy.api.tool_shed_repositories
galaxy.webapps.galaxy.api.tools
galaxy.webapps.galaxy.api.toolshed
galaxy.webapps.galaxy.api.tours
galaxy.webapps.galaxy.api.uploads
galaxy.webapps.galaxy.api.users
galaxy.webapps.galaxy.api.visualizations
galaxy.webapps.galaxy.api.webhooks
galaxy.webapps.galaxy.api.workflows
galaxy.webapps.galaxy.buildapp
galaxy.webapps.galaxy.controllers
galaxy.webapps.galaxy.controllers.admin
galaxy.webapps.galaxy.controllers.admin_toolshed
galaxy.webapps.galaxy.controllers.async
galaxy.webapps.galaxy.controllers.authnz
galaxy.webapps.galaxy.controllers.data_manager
galaxy.webapps.galaxy.controllers.dataset
galaxy.webapps.galaxy.controllers.error
galaxy.webapps.galaxy.controllers.forms
galaxy.webapps.galaxy.controllers.history
galaxy.webapps.galaxy.controllers.interactive_environments
galaxy.webapps.galaxy.controllers.library
galaxy.webapps.galaxy.controllers.openid
galaxy.webapps.galaxy.controllers.page
galaxy.webapps.galaxy.controllers.root
galaxy.webapps.galaxy.controllers.shed_tool_static
galaxy.webapps.galaxy.controllers.tag
galaxy.webapps.galaxy.controllers.tool_runner
galaxy.webapps.galaxy.controllers.user
galaxy.webapps.galaxy.controllers.userskeys
galaxy.webapps.galaxy.controllers.visualization
galaxy.webapps.galaxy.controllers.workflow
galaxy.webapps.reports
galaxy.webapps.reports.app
galaxy.webapps.reports.buildapp
galaxy.webapps.reports.config
galaxy.webapps.reports.controllers
galaxy.webapps.reports.controllers.history
galaxy.webapps.reports.controllers.home
galaxy.webapps.reports.controllers.jobs
galaxy.webapps.reports.controllers.query
galaxy.webapps.reports.controllers.root
galaxy.webapps.reports.controllers.system
galaxy.webapps.reports.controllers.tools
galaxy.webapps.reports.controllers.users
galaxy.webapps.reports.controllers.workflows
galaxy.webapps.reports.framework
galaxy.webapps.reports.framework.grids
galaxy.webapps.util
galaxy.webhooks
galaxy.work
galaxy.work.context
galaxy.workflow
galaxy.workflow.extract
galaxy.workflow.modules
galaxy.workflow.render
galaxy.workflow.resources
galaxy.workflow.run
galaxy.workflow.run_request
galaxy.workflow.schedulers
galaxy.workflow.schedulers.core
galaxy.workflow.scheduling_manager
galaxy.workflow.steps
galaxy_ext
galaxy_ext.expressions
galaxy_ext.expressions.handle_job
galaxy_ext.metadata
galaxy_ext.metadata.set_metadata
tool_shed
tool_shed.dependencies
tool_shed.dependencies.attribute_handlers
tool_shed.dependencies.repository
tool_shed.dependencies.repository.relation_builder
tool_shed.dependencies.tool
tool_shed.dependencies.tool.tag_attribute_handler
tool_shed.galaxy_install
tool_shed.galaxy_install.dependency_display
tool_shed.galaxy_install.grids
tool_shed.galaxy_install.grids.admin_toolshed_grids
tool_shed.galaxy_install.utility_containers
tool_shed.grids
tool_shed.grids.admin_grids
tool_shed.grids.repository_grid_filter_manager
tool_shed.grids.repository_grids
tool_shed.grids.repository_review_grids
tool_shed.grids.util
tool_shed.managers
tool_shed.managers.groups
tool_shed.managers.repositories
tool_shed.metadata
tool_shed.metadata.metadata_generator
tool_shed.metadata.repository_metadata_manager
tool_shed.repository_registry
tool_shed.repository_types
tool_shed.repository_types.metadata
tool_shed.repository_types.registry
tool_shed.repository_types.repository_suite_definition
tool_shed.repository_types.tool_dependency_definition
tool_shed.repository_types.unrestricted
tool_shed.repository_types.util
tool_shed.tools
tool_shed.tools.data_table_manager
tool_shed.tools.tool_validator
tool_shed.tools.tool_version_manager
tool_shed.util
tool_shed.util.admin_util
tool_shed.util.basic_util
tool_shed.util.commit_util
tool_shed.util.common_util
tool_shed.util.container_util
tool_shed.util.encoding_util
tool_shed.util.hg_util
tool_shed.util.metadata_util
tool_shed.util.readme_util
tool_shed.util.repository_content_util
tool_shed.util.repository_util
tool_shed.util.review_util
tool_shed.util.search_util
tool_shed.util.shed_util_common
tool_shed.util.tool_dependency_util
tool_shed.util.tool_util
tool_shed.util.web_util
tool_shed.util.xml_util
tool_shed.utility_containers
tool_shed.utility_containers.utility_container_manager
tool_shed.webapp
tool_shed.webapp.app
tool_shed.webapp.buildapp
tool_shed.webapp.config
