| | |
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g | |
 |
galaxy |
|
|
galaxy.actions |
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galaxy.actions.admin |
|
|
galaxy.actions.library |
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galaxy.app |
|
|
galaxy.auth |
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galaxy.auth.providers |
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galaxy.auth.providers.alwaysreject |
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galaxy.auth.providers.ldap_ad |
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galaxy.auth.providers.localdb |
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|
galaxy.auth.providers.pam_auth |
|
|
galaxy.auth.util |
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galaxy.authnz |
|
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galaxy.authnz.managers |
|
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galaxy.authnz.psa_authnz |
|
|
galaxy.config |
|
|
galaxy.containers |
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galaxy.containers.docker |
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galaxy.containers.docker_decorators |
|
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galaxy.containers.docker_model |
|
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galaxy.containers.docker_swarm |
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galaxy.datatypes |
|
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galaxy.datatypes.annotation |
|
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galaxy.datatypes.anvio |
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galaxy.datatypes.assembly |
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galaxy.datatypes.binary |
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galaxy.datatypes.blast |
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galaxy.datatypes.checkers |
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galaxy.datatypes.chrominfo |
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galaxy.datatypes.constructive_solid_geometry |
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|
galaxy.datatypes.converters |
|
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galaxy.datatypes.converters.bed_to_gff_converter |
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galaxy.datatypes.converters.bedgraph_to_array_tree_converter |
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galaxy.datatypes.converters.bgzip |
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galaxy.datatypes.converters.cram_to_bam |
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galaxy.datatypes.converters.fasta_to_len |
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galaxy.datatypes.converters.fasta_to_tabular_converter |
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galaxy.datatypes.converters.fastq_to_fqtoc |
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galaxy.datatypes.converters.fastqsolexa_to_fasta_converter |
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galaxy.datatypes.converters.fastqsolexa_to_qual_converter |
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galaxy.datatypes.converters.gff_to_bed_converter |
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galaxy.datatypes.converters.gff_to_interval_index_converter |
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galaxy.datatypes.converters.interval_to_bed_converter |
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galaxy.datatypes.converters.interval_to_bedstrict_converter |
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galaxy.datatypes.converters.interval_to_coverage |
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galaxy.datatypes.converters.interval_to_fli |
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galaxy.datatypes.converters.interval_to_interval_index_converter |
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galaxy.datatypes.converters.interval_to_tabix_converter |
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galaxy.datatypes.converters.lped_to_fped_converter |
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galaxy.datatypes.converters.lped_to_pbed_converter |
|
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galaxy.datatypes.converters.maf_to_fasta_converter |
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galaxy.datatypes.converters.maf_to_interval_converter |
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galaxy.datatypes.converters.pbed_ldreduced_converter |
|
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galaxy.datatypes.converters.pbed_to_lped_converter |
|
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galaxy.datatypes.converters.picard_interval_list_to_bed6_converter |
|
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galaxy.datatypes.converters.pileup_to_interval_index_converter |
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galaxy.datatypes.converters.ref_to_seq_taxonomy_converter |
|
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galaxy.datatypes.converters.sam_to_bam |
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galaxy.datatypes.converters.tabular_to_dbnsfp |
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galaxy.datatypes.converters.vcf_to_interval_index_converter |
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galaxy.datatypes.converters.vcf_to_vcf_bgzip |
|
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galaxy.datatypes.converters.wiggle_to_array_tree_converter |
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galaxy.datatypes.converters.wiggle_to_simple_converter |
|
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galaxy.datatypes.coverage |
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galaxy.datatypes.data |
|
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galaxy.datatypes.dataproviders |
|
|
galaxy.datatypes.dataproviders.base |
|
|
galaxy.datatypes.dataproviders.chunk |
|
|
galaxy.datatypes.dataproviders.column |
|
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galaxy.datatypes.dataproviders.dataset |
|
|
galaxy.datatypes.dataproviders.decorators |
|
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galaxy.datatypes.dataproviders.exceptions |
|
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galaxy.datatypes.dataproviders.external |
|
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galaxy.datatypes.dataproviders.hierarchy |
|
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galaxy.datatypes.dataproviders.line |
|
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galaxy.datatypes.display_applications |
|
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galaxy.datatypes.display_applications.application |
|
|
galaxy.datatypes.display_applications.parameters |
|
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galaxy.datatypes.display_applications.util |
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galaxy.datatypes.genetics |
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galaxy.datatypes.graph |
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galaxy.datatypes.images |
|
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galaxy.datatypes.interval |
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galaxy.datatypes.isa |
|
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galaxy.datatypes.metadata |
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galaxy.datatypes.molecules |
|
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galaxy.datatypes.mothur |
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galaxy.datatypes.msa |
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galaxy.datatypes.neo4j |
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galaxy.datatypes.ngsindex |
|
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galaxy.datatypes.phylip |
|
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galaxy.datatypes.plant_tribes |
|
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galaxy.datatypes.proteomics |
|
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galaxy.datatypes.qualityscore |
|
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galaxy.datatypes.registry |
|
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galaxy.datatypes.sequence |
|
|
galaxy.datatypes.sniff |
|
|
galaxy.datatypes.tabular |
|
|
galaxy.datatypes.text |
|
|
galaxy.datatypes.tracks |
|
|
galaxy.datatypes.triples |
|
|
galaxy.datatypes.upload_util |
|
|
galaxy.datatypes.util |
|
|
galaxy.datatypes.util.generic_util |
|
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galaxy.datatypes.util.gff_util |
|
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galaxy.datatypes.xml |
|
|
galaxy.dependencies |
|
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galaxy.eggs |
|
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galaxy.exceptions |
|
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galaxy.exceptions.error_codes |
|
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galaxy.forms |
|
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galaxy.forms.forms |
|
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galaxy.jobs |
|
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galaxy.jobs.actions |
|
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galaxy.jobs.actions.post |
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galaxy.jobs.command_factory |
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galaxy.jobs.datasets |
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galaxy.jobs.dynamic_tool_destination |
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galaxy.jobs.handler |
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galaxy.jobs.manager |
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galaxy.jobs.mapper |
|
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galaxy.jobs.metrics |
|
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galaxy.jobs.metrics.collectl |
|
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galaxy.jobs.metrics.collectl.cli |
|
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galaxy.jobs.metrics.collectl.processes |
|
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galaxy.jobs.metrics.collectl.stats |
|
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galaxy.jobs.metrics.collectl.subsystems |
|
|
galaxy.jobs.metrics.formatting |
|
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galaxy.jobs.metrics.instrumenters |
|
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galaxy.jobs.metrics.instrumenters.cgroup |
|
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galaxy.jobs.metrics.instrumenters.collectl |
|
|
galaxy.jobs.metrics.instrumenters.core |
|
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galaxy.jobs.metrics.instrumenters.cpuinfo |
|
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galaxy.jobs.metrics.instrumenters.env |
|
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galaxy.jobs.metrics.instrumenters.hostname |
|
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galaxy.jobs.metrics.instrumenters.meminfo |
|
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galaxy.jobs.metrics.instrumenters.uname |
|
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galaxy.jobs.output_checker |
|
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galaxy.jobs.rule_helper |
|
|
galaxy.jobs.runners |
|
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galaxy.jobs.runners.chronos |
|
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galaxy.jobs.runners.cli |
|
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galaxy.jobs.runners.condor |
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galaxy.jobs.runners.drmaa |
|
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galaxy.jobs.runners.godocker |
|
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galaxy.jobs.runners.kubernetes |
|
|
galaxy.jobs.runners.local |
|
|
galaxy.jobs.runners.pbs |
|
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galaxy.jobs.runners.pulsar |
|
|
galaxy.jobs.runners.slurm |
|
|
galaxy.jobs.runners.state_handler_factory |
|
|
galaxy.jobs.runners.state_handlers |
|
|
galaxy.jobs.runners.state_handlers.resubmit |
|
|
galaxy.jobs.runners.tasks |
|
|
galaxy.jobs.runners.univa |
|
|
galaxy.jobs.runners.util |
|
|
galaxy.jobs.runners.util.cli |
|
|
galaxy.jobs.runners.util.cli.factory |
|
|
galaxy.jobs.runners.util.cli.job |
|
|
galaxy.jobs.runners.util.cli.job.lsf |
|
|
galaxy.jobs.runners.util.cli.job.slurm |
|
|
galaxy.jobs.runners.util.cli.job.slurm_torque |
|
|
galaxy.jobs.runners.util.cli.job.torque |
|
|
galaxy.jobs.runners.util.cli.shell |
|
|
galaxy.jobs.runners.util.cli.shell.local |
|
|
galaxy.jobs.runners.util.cli.shell.rsh |
|
|
galaxy.jobs.runners.util.condor |
|
|
galaxy.jobs.runners.util.env |
|
|
galaxy.jobs.runners.util.external |
|
|
galaxy.jobs.runners.util.job_script |
|
|
galaxy.jobs.runners.util.kill |
|
|
galaxy.jobs.runners.util.sudo |
|
|
galaxy.jobs.splitters |
|
|
galaxy.jobs.splitters.basic |
|
|
galaxy.jobs.splitters.multi |
|
|
galaxy.jobs.stock_rules |
|
|
galaxy.jobs.transfer_manager |
|
|
galaxy.main |
|
|
galaxy.managers |
|
|
galaxy.managers.annotatable |
|
|
galaxy.managers.api_keys |
|
|
galaxy.managers.base |
|
|
galaxy.managers.citations |
|
|
galaxy.managers.cloud |
|
|
galaxy.managers.cloudauthzs |
|
|
galaxy.managers.collections |
|
|
galaxy.managers.collections_util |
|
|
galaxy.managers.configuration |
|
|
galaxy.managers.containers |
|
|
galaxy.managers.context |
|
|
galaxy.managers.datasets |
|
|
galaxy.managers.deletable |
|
|
galaxy.managers.folders |
|
|
galaxy.managers.hdas |
|
|
galaxy.managers.hdcas |
|
|
galaxy.managers.histories |
|
|
galaxy.managers.history_contents |
|
|
galaxy.managers.jobs |
|
|
galaxy.managers.lddas |
|
|
galaxy.managers.libraries |
|
|
galaxy.managers.library_datasets |
|
|
galaxy.managers.pages |
|
|
galaxy.managers.ratable |
|
|
galaxy.managers.rbac_secured |
|
|
galaxy.managers.roles |
|
|
galaxy.managers.secured |
|
|
galaxy.managers.sharable |
|
|
galaxy.managers.taggable |
|
|
galaxy.managers.users |
|
|
galaxy.managers.visualizations |
|
|
galaxy.managers.workflows |
|
|
galaxy.metadata |
|
|
galaxy.model |
|
|
galaxy.model.base |
|
|
galaxy.model.custom_types |
|
|
galaxy.model.item_attrs |
|
|
galaxy.model.mapping |
|
|
galaxy.model.metadata |
|
|
galaxy.model.migrate |
|
|
galaxy.model.migrate.check |
|
|
galaxy.model.orm |
|
|
galaxy.model.orm.engine_factory |
|
|
galaxy.model.orm.logging_connection_proxy |
|
|
galaxy.model.orm.now |
|
|
galaxy.model.orm.scripts |
|
|
galaxy.model.search |
|
|
galaxy.model.tool_shed_install |
|
|
galaxy.model.tool_shed_install.mapping |
|
|
galaxy.model.tool_shed_install.migrate |
|
|
galaxy.model.tool_shed_install.migrate.check |
|
|
galaxy.model.util |
|
|
galaxy.objectstore |
|
|
galaxy.objectstore.azure_blob |
|
|
galaxy.objectstore.cloud |
|
|
galaxy.objectstore.pithos |
|
|
galaxy.objectstore.pulsar |
|
|
galaxy.objectstore.rods |
|
|
galaxy.objectstore.s3 |
|
|
galaxy.objectstore.s3_multipart_upload |
|
|
galaxy.queue_worker |
|
|
galaxy.queues |
|
|
galaxy.quota |
|
|
galaxy.security |
|
|
galaxy.security.passwords |
|
|
galaxy.security.validate_user_input |
|
|
galaxy.tools |
|
|
galaxy.tools.actions |
|
|
galaxy.tools.actions.data_manager |
|
|
galaxy.tools.actions.data_source |
|
|
galaxy.tools.actions.history_imp_exp |
|
|
galaxy.tools.actions.metadata |
|
|
galaxy.tools.actions.model_operations |
|
|
galaxy.tools.actions.upload |
|
|
galaxy.tools.actions.upload_common |
|
|
galaxy.tools.cache |
|
|
galaxy.tools.cwl |
|
|
galaxy.tools.cwl.cwltool_deps |
|
|
galaxy.tools.cwl.parser |
|
|
galaxy.tools.cwl.representation |
|
|
galaxy.tools.cwl.runtime_actions |
|
|
galaxy.tools.cwl.schema |
|
|
galaxy.tools.cwl.util |
|
|
galaxy.tools.data |
|
|
galaxy.tools.data_fetch |
|
|
galaxy.tools.data_manager |
|
|
galaxy.tools.data_manager.manager |
|
|
galaxy.tools.deps |
|
|
galaxy.tools.deps.brew_exts |
|
|
galaxy.tools.deps.brew_util |
|
|
galaxy.tools.deps.commands |
|
|
galaxy.tools.deps.conda_compat |
|
|
galaxy.tools.deps.conda_util |
|
|
galaxy.tools.deps.container_classes |
|
|
galaxy.tools.deps.container_resolvers |
|
|
galaxy.tools.deps.container_resolvers.explicit |
|
|
galaxy.tools.deps.container_resolvers.mulled |
|
|
galaxy.tools.deps.containers |
|
|
galaxy.tools.deps.dependencies |
|
|
galaxy.tools.deps.docker_util |
|
|
galaxy.tools.deps.dockerfiles |
|
|
galaxy.tools.deps.installable |
|
|
galaxy.tools.deps.mulled |
|
|
galaxy.tools.deps.mulled.mulled_build |
|
|
galaxy.tools.deps.mulled.mulled_build_channel |
|
|
galaxy.tools.deps.mulled.mulled_build_files |
|
|
galaxy.tools.deps.mulled.mulled_build_tool |
|
|
galaxy.tools.deps.mulled.mulled_search |
|
|
galaxy.tools.deps.mulled.util |
|
|
galaxy.tools.deps.requirements |
|
|
galaxy.tools.deps.resolvers |
|
|
galaxy.tools.deps.resolvers.brewed_tool_shed_packages |
|
|
galaxy.tools.deps.resolvers.conda |
|
|
galaxy.tools.deps.resolvers.galaxy_packages |
|
|
galaxy.tools.deps.resolvers.homebrew |
|
|
galaxy.tools.deps.resolvers.lmod |
|
|
galaxy.tools.deps.resolvers.modules |
|
|
galaxy.tools.deps.resolvers.resolver_mixins |
|
|
galaxy.tools.deps.resolvers.tool_shed_packages |
|
|
galaxy.tools.deps.resolvers.unlinked_tool_shed_packages |
|
|
galaxy.tools.deps.singularity_util |
|
|
galaxy.tools.deps.views |
|
|
galaxy.tools.error_reports |
|
|
galaxy.tools.error_reports.plugins |
|
|
galaxy.tools.error_reports.plugins.email |
|
|
galaxy.tools.error_reports.plugins.github |
|
|
galaxy.tools.error_reports.plugins.influxdb |
|
|
galaxy.tools.error_reports.plugins.json |
|
|
galaxy.tools.error_reports.plugins.sentry |
|
|
galaxy.tools.errors |
|
|
galaxy.tools.evaluation |
|
|
galaxy.tools.exception_handling |
|
|
galaxy.tools.execute |
|
|
galaxy.tools.fetcher |
|
|
galaxy.tools.filters |
|
|
galaxy.tools.imp_exp |
|
|
galaxy.tools.imp_exp.export_history |
|
|
galaxy.tools.imp_exp.unpack_tar_gz_archive |
|
|
galaxy.tools.lint |
|
|
galaxy.tools.lint_util |
|
|
galaxy.tools.linters |
|
|
galaxy.tools.linters.citations |
|
|
galaxy.tools.linters.command |
|
|
galaxy.tools.linters.general |
|
|
galaxy.tools.linters.help |
|
|
galaxy.tools.linters.inputs |
|
|
galaxy.tools.linters.outputs |
|
|
galaxy.tools.linters.stdio |
|
|
galaxy.tools.linters.tests |
|
|
galaxy.tools.linters.xml_order |
|
|
galaxy.tools.loader |
|
|
galaxy.tools.loader_directory |
|
|
galaxy.tools.locations |
|
|
galaxy.tools.locations.dockstore |
|
|
galaxy.tools.locations.file |
|
|
galaxy.tools.locations.http |
|
|
galaxy.tools.parameters |
|
|
galaxy.tools.parameters.basic |
|
|
galaxy.tools.parameters.dataset_matcher |
|
|
galaxy.tools.parameters.dynamic_options |
|
|
galaxy.tools.parameters.grouping |
|
|
galaxy.tools.parameters.history_query |
|
|
galaxy.tools.parameters.input_translation |
|
|
galaxy.tools.parameters.meta |
|
|
galaxy.tools.parameters.output_collect |
|
|
galaxy.tools.parameters.sanitize |
|
|
galaxy.tools.parameters.validation |
|
|
galaxy.tools.parameters.wrapped |
|
|
galaxy.tools.parameters.wrapped_json |
|
|
galaxy.tools.parser |
|
|
galaxy.tools.parser.cwl |
|
|
galaxy.tools.parser.error_level |
|
|
galaxy.tools.parser.factory |
|
|
galaxy.tools.parser.interface |
|
|
galaxy.tools.parser.output_actions |
|
|
galaxy.tools.parser.output_collection_def |
|
|
galaxy.tools.parser.output_objects |
|
|
galaxy.tools.parser.util |
|
|
galaxy.tools.parser.xml |
|
|
galaxy.tools.parser.yaml |
|
|
galaxy.tools.provided_metadata |
|
|
galaxy.tools.repositories |
|
|
galaxy.tools.search |
|
|
galaxy.tools.special_tools |
|
|
galaxy.tools.test |
|
|
galaxy.tools.toolbox |
|
|
galaxy.tools.toolbox.base |
|
|
galaxy.tools.toolbox.filters |
|
|
galaxy.tools.toolbox.integrated_panel |
|
|
galaxy.tools.toolbox.lineages |
|
|
galaxy.tools.toolbox.lineages.factory |
|
|
galaxy.tools.toolbox.lineages.interface |
|
|
galaxy.tools.toolbox.panel |
|
|
galaxy.tools.toolbox.parser |
|
|
galaxy.tools.toolbox.tags |
|
|
galaxy.tools.toolbox.watcher |
|
|
galaxy.tools.util |
|
|
galaxy.tools.util.galaxyops |
|
|
galaxy.tools.util.maf_utilities |
|
|
galaxy.tools.verify |
|
|
galaxy.tools.verify.asserts |
|
|
galaxy.tools.verify.asserts.hdf5 |
|
|
galaxy.tools.verify.asserts.tabular |
|
|
galaxy.tools.verify.asserts.text |
|
|
galaxy.tools.verify.asserts.xml |
|
|
galaxy.tools.verify.interactor |
|
|
galaxy.tools.verify.script |
|
|
galaxy.tools.verify.test_data |
|
|
galaxy.tools.wrappers |
|
|
galaxy.tours |
|
|
galaxy.util |
|
|
galaxy.util.aliaspickler |
|
|
galaxy.util.bunch |
|
|
galaxy.util.checkers |
|
|
galaxy.util.compression_utils |
|
|
galaxy.util.dbkeys |
|
|
galaxy.util.dictifiable |
|
|
galaxy.util.expressions |
|
|
galaxy.util.facts |
|
|
galaxy.util.filelock |
|
|
galaxy.util.hash_util |
|
|
galaxy.util.heartbeat |
|
|
galaxy.util.image_util |
|
|
galaxy.util.inflection |
|
|
galaxy.util.json |
|
|
galaxy.util.jstree |
|
|
galaxy.util.lazy_process |
|
|
galaxy.util.logging |
|
|
galaxy.util.logging.fluent_log |
|
|
galaxy.util.monitors |
|
|
galaxy.util.none_like |
|
|
galaxy.util.object_wrapper |
|
|
galaxy.util.odict |
|
|
galaxy.util.oset |
|
|
galaxy.util.pastescript |
|
|
galaxy.util.pastescript.loadwsgi |
|
|
galaxy.util.pastescript.serve |
|
|
galaxy.util.path |
|
|
galaxy.util.path.ntpath |
|
|
galaxy.util.path.posixpath |
|
|
galaxy.util.permutations |
|
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galaxy.util.plugin_config |
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galaxy.util.properties |
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galaxy.util.renamed_temporary_file |
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galaxy.util.rules_dsl |
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galaxy.util.sanitize_html |
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galaxy.util.script |
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galaxy.util.simplegraph |
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galaxy.util.sleeper |
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galaxy.util.sockets |
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galaxy.util.specs |
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galaxy.util.sqlite |
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galaxy.util.streamball |
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galaxy.util.submodules |
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galaxy.util.template |
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galaxy.util.tool_version |
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galaxy.util.topsort |
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galaxy.util.ucsc |
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galaxy.util.validation |
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galaxy.util.watcher |
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galaxy.util.xml_macros |
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galaxy.version |
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galaxy.visualization |
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galaxy.visualization.data_providers |
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galaxy.visualization.data_providers.basic |
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galaxy.visualization.data_providers.cigar |
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galaxy.visualization.data_providers.genome |
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galaxy.visualization.data_providers.phyloviz |
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galaxy.visualization.data_providers.phyloviz.baseparser |
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galaxy.visualization.data_providers.phyloviz.newickparser |
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galaxy.visualization.data_providers.phyloviz.nexusparser |
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galaxy.visualization.data_providers.phyloviz.phyloxmlparser |
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galaxy.visualization.data_providers.registry |
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galaxy.visualization.genome |
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galaxy.visualization.genomes |
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galaxy.visualization.plugins |
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galaxy.visualization.plugins.config_parser |
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galaxy.visualization.plugins.interactive_environments |
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galaxy.visualization.plugins.plugin |
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galaxy.visualization.plugins.registry |
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galaxy.visualization.plugins.resource_parser |
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galaxy.visualization.plugins.utils |
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galaxy.visualization.tracks |
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galaxy.web |
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galaxy.web.base |
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galaxy.web.base.controller |
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galaxy.web.buildapp |
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galaxy.web.form_builder |
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galaxy.web.formatting |
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galaxy.web.framework |
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galaxy.web.framework.base |
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galaxy.web.framework.decorators |
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galaxy.web.framework.helpers |
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galaxy.web.framework.helpers.grids |
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galaxy.web.framework.helpers.tags |
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galaxy.web.framework.middleware |
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galaxy.web.framework.middleware.batch |
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galaxy.web.framework.middleware.error |
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galaxy.web.framework.middleware.profile |
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galaxy.web.framework.middleware.remoteuser |
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galaxy.web.framework.middleware.request_id |
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galaxy.web.framework.middleware.sentry |
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galaxy.web.framework.middleware.sqldebug |
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galaxy.web.framework.middleware.static |
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galaxy.web.framework.middleware.statsd |
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galaxy.web.framework.middleware.translogger |
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galaxy.web.framework.middleware.xforwardedhost |
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galaxy.web.framework.webapp |
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galaxy.web.params |
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galaxy.web.proxy |
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galaxy.web.stack |
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galaxy.web.stack.handlers |
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galaxy.web.stack.message |
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galaxy.web.stack.transport |
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galaxy.webapps |
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galaxy.webapps.config_manage |
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galaxy.webapps.galaxy |
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galaxy.webapps.galaxy.api |
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galaxy.webapps.galaxy.api.annotations |
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galaxy.webapps.galaxy.api.authenticate |
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galaxy.webapps.galaxy.api.cloud |
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galaxy.webapps.galaxy.api.cloudauthz |
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galaxy.webapps.galaxy.api.configuration |
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galaxy.webapps.galaxy.api.dataset_collections |
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galaxy.webapps.galaxy.api.datasets |
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galaxy.webapps.galaxy.api.datatypes |
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galaxy.webapps.galaxy.api.display_applications |
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galaxy.webapps.galaxy.api.extended_metadata |
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galaxy.webapps.galaxy.api.folder_contents |
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galaxy.webapps.galaxy.api.folders |
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galaxy.webapps.galaxy.api.forms |
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galaxy.webapps.galaxy.api.genomes |
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galaxy.webapps.galaxy.api.group_roles |
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galaxy.webapps.galaxy.api.group_users |
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galaxy.webapps.galaxy.api.groups |
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galaxy.webapps.galaxy.api.histories |
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galaxy.webapps.galaxy.api.history_contents |
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galaxy.webapps.galaxy.api.item_tags |
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galaxy.webapps.galaxy.api.job_files |
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galaxy.webapps.galaxy.api.jobs |
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galaxy.webapps.galaxy.api.libraries |
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galaxy.webapps.galaxy.api.library_contents |
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galaxy.webapps.galaxy.api.library_datasets |
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galaxy.webapps.galaxy.api.metrics |
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galaxy.webapps.galaxy.api.page_revisions |
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galaxy.webapps.galaxy.api.pages |
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galaxy.webapps.galaxy.api.plugins |
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galaxy.webapps.galaxy.api.provenance |
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galaxy.webapps.galaxy.api.quotas |
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galaxy.webapps.galaxy.api.remote_files |
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galaxy.webapps.galaxy.api.roles |
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galaxy.webapps.galaxy.api.search |
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galaxy.webapps.galaxy.api.tool_data |
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galaxy.webapps.galaxy.api.tool_dependencies |
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galaxy.webapps.galaxy.api.tool_shed_repositories |
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galaxy.webapps.galaxy.api.tools |
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galaxy.webapps.galaxy.api.toolshed |
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galaxy.webapps.galaxy.api.tours |
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galaxy.webapps.galaxy.api.uploads |
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galaxy.webapps.galaxy.api.users |
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galaxy.webapps.galaxy.api.visualizations |
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galaxy.webapps.galaxy.api.webhooks |
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galaxy.webapps.galaxy.api.workflows |
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galaxy.webapps.galaxy.buildapp |
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galaxy.webapps.galaxy.config_watchers |
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galaxy.webapps.galaxy.controllers |
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galaxy.webapps.galaxy.controllers.admin |
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galaxy.webapps.galaxy.controllers.admin_toolshed |
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galaxy.webapps.galaxy.controllers.async |
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galaxy.webapps.galaxy.controllers.authnz |
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galaxy.webapps.galaxy.controllers.data_manager |
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galaxy.webapps.galaxy.controllers.dataset |
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galaxy.webapps.galaxy.controllers.error |
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galaxy.webapps.galaxy.controllers.forms |
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galaxy.webapps.galaxy.controllers.history |
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galaxy.webapps.galaxy.controllers.interactive_environments |
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galaxy.webapps.galaxy.controllers.library |
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galaxy.webapps.galaxy.controllers.page |
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galaxy.webapps.galaxy.controllers.root |
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galaxy.webapps.galaxy.controllers.tag |
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galaxy.webapps.galaxy.controllers.tool_runner |
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galaxy.webapps.galaxy.controllers.user |
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galaxy.webapps.galaxy.controllers.userskeys |
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galaxy.webapps.galaxy.controllers.visualization |
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galaxy.webapps.galaxy.controllers.workflow |
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galaxy.webapps.reports |
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galaxy.webapps.reports.app |
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galaxy.webapps.reports.buildapp |
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galaxy.webapps.reports.config |
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galaxy.webapps.reports.controllers |
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galaxy.webapps.reports.controllers.history |
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galaxy.webapps.reports.controllers.home |
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galaxy.webapps.reports.controllers.jobs |
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galaxy.webapps.reports.controllers.query |
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galaxy.webapps.reports.controllers.root |
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galaxy.webapps.reports.controllers.system |
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galaxy.webapps.reports.controllers.tools |
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galaxy.webapps.reports.controllers.users |
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galaxy.webapps.reports.controllers.workflows |
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galaxy.webapps.reports.framework |
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galaxy.webapps.reports.framework.grids |
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galaxy.webapps.tool_shed |
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galaxy.webapps.tool_shed.api |
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galaxy.webapps.tool_shed.api.authenticate |
|
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galaxy.webapps.tool_shed.api.categories |
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galaxy.webapps.tool_shed.api.configuration |
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galaxy.webapps.tool_shed.api.groups |
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galaxy.webapps.tool_shed.api.repositories |
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galaxy.webapps.tool_shed.api.repository_revisions |
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galaxy.webapps.tool_shed.api.tools |
|
|
galaxy.webapps.tool_shed.api.users |
|
|
galaxy.webapps.tool_shed.app |
|
|
galaxy.webapps.tool_shed.buildapp |
|
|
galaxy.webapps.tool_shed.config |
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galaxy.webapps.tool_shed.controllers |
|
|
galaxy.webapps.tool_shed.controllers.admin |
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|
galaxy.webapps.tool_shed.controllers.groups |
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galaxy.webapps.tool_shed.controllers.hg |
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|
galaxy.webapps.tool_shed.controllers.repository |
|
|
galaxy.webapps.tool_shed.controllers.repository_review |
|
|
galaxy.webapps.tool_shed.controllers.upload |
|
|
galaxy.webapps.tool_shed.controllers.user |
|
|
galaxy.webapps.tool_shed.framework |
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|
galaxy.webapps.tool_shed.framework.middleware |
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galaxy.webapps.tool_shed.framework.middleware.remoteuser |
|
|
galaxy.webapps.tool_shed.model |
|
|
galaxy.webapps.tool_shed.model.mapping |
|
|
galaxy.webapps.tool_shed.model.migrate |
|
|
galaxy.webapps.tool_shed.model.migrate.check |
|
|
galaxy.webapps.tool_shed.search |
|
|
galaxy.webapps.tool_shed.search.repo_search |
|
|
galaxy.webapps.tool_shed.search.tool_search |
|
|
galaxy.webapps.tool_shed.security |
|
|
galaxy.webapps.tool_shed.util |
|
|
galaxy.webapps.tool_shed.util.hgweb_config |
|
|
galaxy.webapps.tool_shed.util.ratings_util |
|
|
galaxy.webapps.tool_shed.util.shed_statistics |
|
|
galaxy.webapps.util |
|
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galaxy.webhooks |
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galaxy.work |
|
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galaxy.work.context |
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galaxy.workflow |
|
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galaxy.workflow.extract |
|
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galaxy.workflow.modules |
|
|
galaxy.workflow.render |
|
|
galaxy.workflow.resources |
|
|
galaxy.workflow.run |
|
|
galaxy.workflow.run_request |
|
|
galaxy.workflow.schedulers |
|
|
galaxy.workflow.schedulers.core |
|
|
galaxy.workflow.scheduling_manager |
|
|
galaxy.workflow.steps |
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galaxy_ext |
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galaxy_ext.metadata |
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galaxy_ext.metadata.set_metadata |
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| | |
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l | |
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log_tempfile |
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| | |
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m | |
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mimeparse |
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| | |
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p | |
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psyco_full |
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| | |
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t | |
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tool_shed |
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tool_shed.capsule |
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tool_shed.capsule.capsule_manager |
|
|
tool_shed.dependencies |
|
|
tool_shed.dependencies.attribute_handlers |
|
|
tool_shed.dependencies.repository |
|
|
tool_shed.dependencies.repository.relation_builder |
|
|
tool_shed.dependencies.tool |
|
|
tool_shed.dependencies.tool.tag_attribute_handler |
|
|
tool_shed.galaxy_install |
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tool_shed.galaxy_install.datatypes |
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|
tool_shed.galaxy_install.datatypes.custom_datatype_manager |
|
|
tool_shed.galaxy_install.dependency_display |
|
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tool_shed.galaxy_install.grids |
|
|
tool_shed.galaxy_install.grids.admin_toolshed_grids |
|
|
tool_shed.galaxy_install.install_manager |
|
|
tool_shed.galaxy_install.installed_repository_manager |
|
|
tool_shed.galaxy_install.metadata |
|
|
tool_shed.galaxy_install.metadata.installed_repository_metadata_manager |
|
|
tool_shed.galaxy_install.migrate |
|
|
tool_shed.galaxy_install.migrate.check |
|
|
tool_shed.galaxy_install.migrate.common |
|
|
tool_shed.galaxy_install.repair_repository_manager |
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tool_shed.galaxy_install.repository_dependencies |
|
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tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager |
|
|
tool_shed.galaxy_install.tool_dependencies |
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tool_shed.galaxy_install.tool_dependencies.env_manager |
|
|
tool_shed.galaxy_install.tool_dependencies.recipe |
|
|
tool_shed.galaxy_install.tool_dependencies.recipe.asynchronous_reader |
|
|
tool_shed.galaxy_install.tool_dependencies.recipe.env_file_builder |
|
|
tool_shed.galaxy_install.tool_dependencies.recipe.install_environment |
|
|
tool_shed.galaxy_install.tool_dependencies.recipe.recipe_manager |
|
|
tool_shed.galaxy_install.tool_dependencies.recipe.step_handler |
|
|
tool_shed.galaxy_install.tool_dependencies.recipe.tag_handler |
|
|
tool_shed.galaxy_install.tool_migration_manager |
|
|
tool_shed.galaxy_install.tools |
|
|
tool_shed.galaxy_install.tools.data_manager |
|
|
tool_shed.galaxy_install.tools.tool_panel_manager |
|
|
tool_shed.galaxy_install.update_repository_manager |
|
|
tool_shed.galaxy_install.utility_containers |
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|
tool_shed.grids |
|
|
tool_shed.grids.admin_grids |
|
|
tool_shed.grids.repository_grid_filter_manager |
|
|
tool_shed.grids.repository_grids |
|
|
tool_shed.grids.repository_review_grids |
|
|
tool_shed.grids.util |
|
|
tool_shed.managers |
|
|
tool_shed.managers.groups |
|
|
tool_shed.managers.repositories |
|
|
tool_shed.metadata |
|
|
tool_shed.metadata.metadata_generator |
|
|
tool_shed.metadata.repository_metadata_manager |
|
|
tool_shed.repository_registry |
|
|
tool_shed.repository_types |
|
|
tool_shed.repository_types.metadata |
|
|
tool_shed.repository_types.registry |
|
|
tool_shed.repository_types.repository_suite_definition |
|
|
tool_shed.repository_types.tool_dependency_definition |
|
|
tool_shed.repository_types.unrestricted |
|
|
tool_shed.repository_types.util |
|
|
tool_shed.tool_shed_registry |
|
|
tool_shed.tools |
|
|
tool_shed.tools.data_table_manager |
|
|
tool_shed.tools.tool_validator |
|
|
tool_shed.tools.tool_version_manager |
|
|
tool_shed.util |
|
|
tool_shed.util.admin_util |
|
|
tool_shed.util.basic_util |
|
|
tool_shed.util.commit_util |
|
|
tool_shed.util.common_util |
|
|
tool_shed.util.container_util |
|
|
tool_shed.util.encoding_util |
|
|
tool_shed.util.hg_util |
|
|
tool_shed.util.metadata_util |
|
|
tool_shed.util.readme_util |
|
|
tool_shed.util.repository_content_util |
|
|
tool_shed.util.repository_util |
|
|
tool_shed.util.review_util |
|
|
tool_shed.util.search_util |
|
|
tool_shed.util.shed_util_common |
|
|
tool_shed.util.tool_dependency_util |
|
|
tool_shed.util.tool_util |
|
|
tool_shed.util.web_util |
|
|
tool_shed.util.workflow_util |
|
|
tool_shed.util.xml_util |
|
|
tool_shed.utility_containers |
|
|
tool_shed.utility_containers.utility_container_manager |
|