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tool_shed.webapp.model package

tool_shed.webapp.model.now()

Return a new datetime representing UTC day and time.

class tool_shed.webapp.model.Base(**kwargs: Any)

Bases: object

registry = <sqlalchemy.orm.decl_api.registry object>

metadata = MetaData()

__init__(**kwargs: Any) → None

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

table: Table

class tool_shed.webapp.model.APIKeys(**kwargs)

Bases: Base

id: Mapped[int]

create_time: Mapped[datetime | None]

user_id: Mapped[int | None]

key: Mapped[str | None]

user

deleted: Mapped[bool | None]

__init__(**kwargs)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

table: Table = Table('api_keys', MetaData(), Column('id', Integer(), table=<api_keys>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<api_keys>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<api_keys>), Column('key', TrimmedString(length=32), table=<api_keys>), Column('deleted', Boolean(), table=<api_keys>, default=ScalarElementColumnDefault(False)), schema=None)

class tool_shed.webapp.model.User(email=None, password=None)

Bases: Base, Dictifiable

id: Mapped[int]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

username: Mapped[str | None]

active_repositories

galaxy_sessions

api_keys

reset_tokens

groups

dict_collection_visible_keys = ['id', 'username']

dict_element_visible_keys = ['id', 'username']

bootstrap_admin_user = False

roles

non_private_roles

__init__(email=None, password=None)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

email: Mapped[str]

password: Mapped[str]

external: Mapped[bool | None]

deleted: Mapped[bool | None]

purged: Mapped[bool | None]

new_repo_alert: Mapped[bool | None]

all_roles()

check_password(cleartext)

Check if ‘cleartext’ matches ‘self.password’ when hashed.

get_disk_usage(nice_size=False)

property nice_total_disk_usage

set_disk_usage(bytes)

property total_disk_usage

set_password_cleartext(cleartext)

set_random_password(length=16)

Sets user password to a random string of the given length. :return: void

table: Table = Table('galaxy_user', MetaData(), Column('id', Integer(), table=<galaxy_user>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<galaxy_user>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<galaxy_user>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('email', TrimmedString(length=255), table=<galaxy_user>, nullable=False), Column('username', String(length=255), table=<galaxy_user>), Column('password', TrimmedString(length=40), table=<galaxy_user>, nullable=False), Column('external', Boolean(), table=<galaxy_user>, default=ScalarElementColumnDefault(False)), Column('new_repo_alert', Boolean(), table=<galaxy_user>, default=ScalarElementColumnDefault(False)), Column('deleted', Boolean(), table=<galaxy_user>, default=ScalarElementColumnDefault(False)), Column('purged', Boolean(), table=<galaxy_user>, default=ScalarElementColumnDefault(False)), schema=None)

class tool_shed.webapp.model.PasswordResetToken(user, token=None)

Bases: Base

user_id: Mapped[int | None]

__init__(user, token=None)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

token: Mapped[str]

user

expiration_time: Mapped[datetime | None]

table: Table = Table('password_reset_token', MetaData(), Column('token', String(length=32), table=<password_reset_token>, primary_key=True, nullable=False), Column('expiration_time', DateTime(), table=<password_reset_token>), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<password_reset_token>), schema=None)

class tool_shed.webapp.model.Group(name=None)

Bases: Base, Dictifiable

id: Mapped[int]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

roles

users

dict_collection_visible_keys = ['id', 'name']

dict_element_visible_keys = ['id', 'name']

__init__(name=None)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

name: Mapped[str | None]

deleted: Mapped[bool | None]

table: Table = Table('galaxy_group', MetaData(), Column('id', Integer(), table=<galaxy_group>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<galaxy_group>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<galaxy_group>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('name', String(length=255), table=<galaxy_group>), Column('deleted', Boolean(), table=<galaxy_group>, default=ScalarElementColumnDefault(False)), schema=None)

class tool_shed.webapp.model.Role(name=None, description=None, type='system', deleted=False)

Bases: Base, Dictifiable

id: Mapped[int]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

repositories

groups

users

dict_collection_visible_keys = ['id', 'name']

dict_element_visible_keys = ['id', 'name', 'description', 'type']

private_id = None

types = <galaxy.util.bunch.Bunch object>

__init__(name=None, description=None, type='system', deleted=False)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

name: Mapped[str | None]

description: Mapped[str | None]

type: Mapped[str | None]

deleted: Mapped[bool | None]

property is_repository_admin_role

table: Table = Table('role', MetaData(), Column('id', Integer(), table=<role>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<role>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<role>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('name', String(length=255), table=<role>), Column('description', TEXT(), table=<role>), Column('type', String(length=40), table=<role>), Column('deleted', Boolean(), table=<role>, default=ScalarElementColumnDefault(False)), schema=None)

class tool_shed.webapp.model.UserGroupAssociation(user, group)

Bases: Base

id: Mapped[int]

user_id: Mapped[int | None]

group_id: Mapped[int | None]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

__init__(user, group)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

user

group

table: Table = Table('user_group_association', MetaData(), Column('id', Integer(), table=<user_group_association>, primary_key=True, nullable=False), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<user_group_association>), Column('group_id', Integer(), ForeignKey('galaxy_group.id'), table=<user_group_association>), Column('create_time', DateTime(), table=<user_group_association>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<user_group_association>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), schema=None)

class tool_shed.webapp.model.UserRoleAssociation(user, role)

Bases: Base

id: Mapped[int]

user_id: Mapped[int | None]

role_id: Mapped[int | None]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

__init__(user, role)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

user

role

table: Table = Table('user_role_association', MetaData(), Column('id', Integer(), table=<user_role_association>, primary_key=True, nullable=False), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<user_role_association>), Column('role_id', Integer(), ForeignKey('role.id'), table=<user_role_association>), Column('create_time', DateTime(), table=<user_role_association>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<user_role_association>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), schema=None)

class tool_shed.webapp.model.GroupRoleAssociation(group, role)

Bases: Base

id: Mapped[int]

group_id: Mapped[int | None]

role_id: Mapped[int | None]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

__init__(group, role)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

group

role

table: Table = Table('group_role_association', MetaData(), Column('id', Integer(), table=<group_role_association>, primary_key=True, nullable=False), Column('group_id', Integer(), ForeignKey('galaxy_group.id'), table=<group_role_association>), Column('role_id', Integer(), ForeignKey('role.id'), table=<group_role_association>), Column('create_time', DateTime(), table=<group_role_association>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<group_role_association>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), schema=None)

class tool_shed.webapp.model.RepositoryRoleAssociation(repository, role)

Bases: Base

id: Mapped[int]

repository_id: Mapped[int | None]

role_id: Mapped[int | None]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

__init__(repository, role)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

repository

role

table: Table = Table('repository_role_association', MetaData(), Column('id', Integer(), table=<repository_role_association>, primary_key=True, nullable=False), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_role_association>), Column('role_id', Integer(), ForeignKey('role.id'), table=<repository_role_association>), Column('create_time', DateTime(), table=<repository_role_association>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository_role_association>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), schema=None)

class tool_shed.webapp.model.GalaxySession(is_valid=False, **kwd)

Bases: Base

id: Mapped[int]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

user_id: Mapped[int | None]

remote_host: Mapped[str | None]

remote_addr: Mapped[str | None]

referer: Mapped[str | None]

session_key: Mapped[str | None]

prev_session_id: Mapped[int | None]

user

__init__(is_valid=False, **kwd)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

is_valid: Mapped[bool | None]

last_action: Mapped[datetime | None]

table: Table = Table('galaxy_session', MetaData(), Column('id', Integer(), table=<galaxy_session>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<galaxy_session>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<galaxy_session>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<galaxy_session>), Column('remote_host', String(length=255), table=<galaxy_session>), Column('remote_addr', String(length=255), table=<galaxy_session>), Column('referer', TEXT(), table=<galaxy_session>), Column('session_key', TrimmedString(length=255), table=<galaxy_session>), Column('is_valid', Boolean(), table=<galaxy_session>, default=ScalarElementColumnDefault(False)), Column('prev_session_id', Integer(), table=<galaxy_session>), Column('last_action', DateTime(), table=<galaxy_session>), schema=None)

class tool_shed.webapp.model.Repository(private=False, times_downloaded=0, deprecated=False, **kwd)

Bases: Base, Dictifiable

id: Mapped[int]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

type: Mapped[str | None]

remote_repository_url: Mapped[str | None]

homepage_url: Mapped[str | None]

description: Mapped[str | None]

long_description: Mapped[str | None]

user_id: Mapped[int | None]

deleted: Mapped[bool | None]

email_alerts: Mapped[bytes | None]

categories

ratings

user

downloadable_revisions

metadata_revisions

roles

dict_collection_visible_keys = ['id', 'name', 'type', 'remote_repository_url', 'homepage_url', 'description', 'user_id', 'private', 'deleted', 'times_downloaded', 'deprecated', 'create_time', 'update_time']

dict_element_visible_keys = ['id', 'name', 'type', 'remote_repository_url', 'homepage_url', 'description', 'long_description', 'user_id', 'private', 'deleted', 'times_downloaded', 'deprecated', 'create_time', 'update_time']

file_states = <galaxy.util.bunch.Bunch object>

__init__(private=False, times_downloaded=0, deprecated=False, **kwd)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

private: Mapped[bool | None]

times_downloaded: Mapped[int | None]

deprecated: Mapped[bool | None]

name: Mapped[str | None]

property hg_repo

property admin_role

allow_push()

can_change_type()

can_change_type_to(app, new_type_label)

get_changesets_for_setting_metadata(app)

get_repository_dependencies(app, changeset, toolshed_url)

get_type_class(app)

get_tool_dependencies(app, changeset_revision)

installable_revisions(app, sort_revisions=True)

is_new()

repo_path(app=None)

revision()

set_allow_push(usernames, remove_auth='')

tip()

to_dict(view='collection', value_mapper=None)

Return item dictionary.

table: Table = Table('repository', MetaData(), Column('id', Integer(), table=<repository>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<repository>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('name', TrimmedString(length=255), table=<repository>), Column('type', TrimmedString(length=255), table=<repository>), Column('remote_repository_url', TrimmedString(length=255), table=<repository>), Column('homepage_url', TrimmedString(length=255), table=<repository>), Column('description', TEXT(), table=<repository>), Column('long_description', TEXT(), table=<repository>), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<repository>), Column('private', Boolean(), table=<repository>, default=ScalarElementColumnDefault(False)), Column('deleted', Boolean(), table=<repository>, default=ScalarElementColumnDefault(False)), Column('email_alerts', MutableJSONType(), table=<repository>), Column('times_downloaded', Integer(), table=<repository>), Column('deprecated', Boolean(), table=<repository>, default=ScalarElementColumnDefault(False)), schema=None)

class tool_shed.webapp.model.ItemRatingAssociation(id=None, user=None, item=None, rating=0, comment='')

Bases: object

__init__(id=None, user=None, item=None, rating=0, comment='')

set_item(item)

Set association’s item.

class tool_shed.webapp.model.RepositoryRatingAssociation(**kwargs)

Bases: Base, ItemRatingAssociation

id: Mapped[int]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

repository_id: Mapped[int | None]

user_id: Mapped[int | None]

rating: Mapped[int | None]

comment: Mapped[str | None]

repository

user

set_item(repository)

Set association’s item.

__init__(**kwargs)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

table: Table = Table('repository_rating_association', MetaData(), Column('id', Integer(), table=<repository_rating_association>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<repository_rating_association>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository_rating_association>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_rating_association>), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<repository_rating_association>), Column('rating', Integer(), table=<repository_rating_association>), Column('comment', TEXT(), table=<repository_rating_association>), schema=None)

class tool_shed.webapp.model.Category(deleted=False, **kwd)

Bases: Base, Dictifiable

id: Mapped[int]

create_time: Mapped[datetime | None]

update_time: Mapped[datetime | None]

name: Mapped[str | None]

description: Mapped[str | None]

repositories

dict_collection_visible_keys = ['id', 'name', 'description', 'deleted']

dict_element_visible_keys = ['id', 'name', 'description', 'deleted']

__init__(deleted=False, **kwd)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

deleted: Mapped[bool | None]

table: Table = Table('category', MetaData(), Column('id', Integer(), table=<category>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<category>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<category>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('name', TrimmedString(length=255), table=<category>), Column('description', TEXT(), table=<category>), Column('deleted', Boolean(), table=<category>, default=ScalarElementColumnDefault(False)), schema=None)

class tool_shed.webapp.model.RepositoryCategoryAssociation(repository=None, category=None)

Bases: Base

id: Mapped[int]

repository_id: Mapped[int | None]

category_id: Mapped[int | None]

__init__(repository=None, category=None)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

repository

table: Table = Table('repository_category_association', MetaData(), Column('id', Integer(), table=<repository_category_association>, primary_key=True, nullable=False), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_category_association>), Column('category_id', Integer(), ForeignKey('category.id'), table=<repository_category_association>), schema=None)

category

class tool_shed.webapp.model.Tag(**kwargs)

Bases: Base

__init__(**kwargs)

A simple constructor that allows initialization from kwargs.

Sets attributes on the constructed instance using the names and values in kwargs.

Only keys that are present as attributes of the instance’s class are allowed. These could be, for example, any mapped columns or relationships.

table: Table = Table('tag', MetaData(), Column('id', Integer(), table=<tag>, primary_key=True, nullable=False), Column('type', Integer(), table=<tag>), Column('parent_id', Integer(), ForeignKey('tag.id'), table=<tag>), Column('name', TrimmedString(length=255), table=<tag>), schema=None)

id: Mapped[int]

type: Mapped[int | None]

parent_id: Mapped[int | None]

name: Mapped[str | None]

children

parent

class tool_shed.webapp.model.RepositoryMetadata(id=None, repository_id=None, numeric_revision=None, changeset_revision=None, metadata=None, tool_versions=None, malicious=False, downloadable=False, missing_test_components=None, tools_functionally_correct=False, test_install_error=False, has_repository_dependencies=False, includes_datatypes=False, includes_tools=False, includes_tool_dependencies=False, includes_workflows=False)

Bases: Dictifiable

create_time

repository

update_time

table = Table('repository_metadata', MetaData(), Column('id', Integer(), table=<repository_metadata>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<repository_metadata>, default=CallableColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository_metadata>, onupdate=CallableColumnDefault(<function datetime.utcnow>), default=CallableColumnDefault(<function datetime.utcnow>)), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_metadata>), Column('changeset_revision', TrimmedString(length=255), table=<repository_metadata>), Column('numeric_revision', Integer(), table=<repository_metadata>), Column('metadata', MutableJSONType(), table=<repository_metadata>), Column('tool_versions', MutableJSONType(), table=<repository_metadata>), Column('malicious', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(False)), Column('downloadable', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(True)), Column('missing_test_components', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(False)), Column('has_repository_dependencies', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(False)), Column('includes_datatypes', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(False)), Column('includes_tools', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(False)), Column('includes_tool_dependencies', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(False)), Column('includes_workflows', Boolean(), table=<repository_metadata>, default=ScalarElementColumnDefault(False)), schema=None)

dict_collection_visible_keys = ['id', 'repository_id', 'numeric_revision', 'changeset_revision', 'malicious', 'downloadable', 'missing_test_components', 'has_repository_dependencies', 'includes_datatypes', 'includes_tools', 'includes_tool_dependencies', 'includes_tools_for_display_in_tool_panel', 'includes_workflows']

dict_element_visible_keys = ['id', 'repository_id', 'numeric_revision', 'changeset_revision', 'malicious', 'downloadable', 'missing_test_components', 'has_repository_dependencies', 'includes_datatypes', 'includes_tools', 'includes_tool_dependencies', 'includes_tools_for_display_in_tool_panel', 'includes_workflows', 'repository_dependencies']

__init__(id=None, repository_id=None, numeric_revision=None, changeset_revision=None, metadata=None, tool_versions=None, malicious=False, downloadable=False, missing_test_components=None, tools_functionally_correct=False, test_install_error=False, has_repository_dependencies=False, includes_datatypes=False, includes_tools=False, includes_tool_dependencies=False, includes_workflows=False)

id

repository_id

numeric_revision

changeset_revision

metadata

tool_versions

malicious

downloadable

missing_test_components

has_repository_dependencies

includes_datatypes

includes_tools

includes_tool_dependencies

includes_workflows

property includes_tools_for_display_in_tool_panel

property repository_dependencies

tool_shed.webapp.model.sort_by_attr(seq, attr)

Sort the sequence of objects by object’s attribute Arguments: seq - the list or any sequence (including immutable one) of objects to sort. attr - the name of attribute to sort by

Subpackages

• tool_shed.webapp.model.migrate package
  • Subpackages
    • tool_shed.webapp.model.migrate.versions package
      • Submodules
      • tool_shed.webapp.model.migrate.versions.0001_initial_tables module
      • tool_shed.webapp.model.migrate.versions.0002_add_tool_suite_column module
      • tool_shed.webapp.model.migrate.versions.0003_review_and_review_association_tables module
      • tool_shed.webapp.model.migrate.versions.0004_repository_tables module
      • tool_shed.webapp.model.migrate.versions.0005_drop_tool_related_tables module
      • tool_shed.webapp.model.migrate.versions.0006_add_email_alerts_column module
      • tool_shed.webapp.model.migrate.versions.0007_add_long_description_times_downloaded_columns module
      • tool_shed.webapp.model.migrate.versions.0008_add_repository_metadata_table module
      • tool_shed.webapp.model.migrate.versions.0009_add_malicious_column module
      • tool_shed.webapp.model.migrate.versions.0010_add_new_repo_alert_column module
      • tool_shed.webapp.model.migrate.versions.0011_add_tool_versions_column module
      • tool_shed.webapp.model.migrate.versions.0012_add_downloadable_column module
      • tool_shed.webapp.model.migrate.versions.0013_add_review_tables module
      • tool_shed.webapp.model.migrate.versions.0014_add_deprecated_column module
      • tool_shed.webapp.model.migrate.versions.0015_add_api_keys_table module
      • tool_shed.webapp.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns module
      • tool_shed.webapp.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table module
      • tool_shed.webapp.model.migrate.versions.0018_add_repository_metadata_flag_columns module
      • tool_shed.webapp.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column module
      • tool_shed.webapp.model.migrate.versions.0020_add_repository_type_column module
      • tool_shed.webapp.model.migrate.versions.0021_change_repository_type_value module
      • tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles module
      • tool_shed.webapp.model.migrate.versions.0023_add_repository_url_and_hompeage_url module
      • tool_shed.webapp.model.migrate.versions.0024_password_reset module
      • tool_shed.webapp.model.migrate.versions.0025_session_timeout module
      • tool_shed.webapp.model.migrate.versions.0026_add_numeric_revision_column module
  • Submodules
  • tool_shed.webapp.model.migrate.check module

Submodules

tool_shed.webapp.model.mapping module

Details of how the data model objects are mapped onto the relational database are encapsulated here.

class tool_shed.webapp.model.mapping.ToolShedModelMapping(model_modules, engine)

Bases: SharedModelMapping

security_agent: CommunityRBACAgent

shed_counter: ShedCounter

create_tables: bool

tool_shed.webapp.model.mapping.init(url: str, engine_options: Dict[str, Any] | None = None, create_tables: bool = False) → ToolShedModelMapping

Connect mappings to the database