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tool_shed.webapp.model package¶

tool_shed.webapp.model.now()¶: Return a new datetime representing UTC day and time.

class tool_shed.webapp.model.APIKeys[source]¶

Bases: object

__init__()¶: Initialize self. See help(type(self)) for accurate signature.

create_time¶

id¶

key¶

table = Table('api_keys', MetaData(), Column('id', Integer(), table=<api_keys>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<api_keys>, default=ColumnDefault(<function datetime.utcnow>)), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<api_keys>), Column('key', TrimmedString(length=32), table=<api_keys>), schema=None)¶

user_id¶

class tool_shed.webapp.model.User(email=None, password=None)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'username']¶

dict_element_visible_keys = ['id', 'username']¶

bootstrap_admin_user = False¶

__init__(email=None, password=None)¶: Initialize self. See help(type(self)) for accurate signature.

email¶

password¶

external¶

deleted¶

purged¶

username¶

new_repo_alert¶

all_roles()[source]¶

check_password(cleartext)[source]¶: Check if ‘cleartext’ matches ‘self.password’ when hashed.

get_disk_usage(nice_size=False)[source]¶

property nice_total_disk_usage¶

set_disk_usage(bytes)[source]¶

property total_disk_usage¶

set_password_cleartext(cleartext)[source]¶

active_repositories¶

api_keys¶

create_time¶

galaxy_sessions¶

id¶

table = Table('galaxy_user', MetaData(), Column('id', Integer(), table=<galaxy_user>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<galaxy_user>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<galaxy_user>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('email', TrimmedString(length=255), table=<galaxy_user>, nullable=False), Column('username', String(length=255), table=<galaxy_user>), Column('password', TrimmedString(length=40), table=<galaxy_user>, nullable=False), Column('external', Boolean(), table=<galaxy_user>, default=ColumnDefault(False)), Column('new_repo_alert', Boolean(), table=<galaxy_user>, default=ColumnDefault(False)), Column('deleted', Boolean(), table=<galaxy_user>, default=ColumnDefault(False)), Column('purged', Boolean(), table=<galaxy_user>, default=ColumnDefault(False)), schema=None)¶

update_time¶

class tool_shed.webapp.model.PasswordResetToken(user, token=None)[source]¶

Bases: object

__init__(user, token=None)¶: Initialize self. See help(type(self)) for accurate signature.

token¶

user¶

expiration_time¶

table = Table('password_reset_token', MetaData(), Column('token', String(length=32), table=<password_reset_token>, primary_key=True, nullable=False), Column('expiration_time', DateTime(), table=<password_reset_token>), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<password_reset_token>), schema=None)¶

user_id¶

class tool_shed.webapp.model.Group(name=None)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'name']¶

dict_element_visible_keys = ['id', 'name']¶

__init__(name=None)¶: Initialize self. See help(type(self)) for accurate signature.

name¶

deleted¶

create_time¶

id¶

table = Table('galaxy_group', MetaData(), Column('id', Integer(), table=<galaxy_group>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<galaxy_group>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<galaxy_group>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('name', String(length=255), table=<galaxy_group>), Column('deleted', Boolean(), table=<galaxy_group>, default=ColumnDefault(False)), schema=None)¶

update_time¶

users¶

class tool_shed.webapp.model.Role(name='', description='', type='system', deleted=False)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'name']¶

dict_element_visible_keys = ['id', 'name', 'description', 'type']¶

private_id = None¶

types = <galaxy.util.bunch.Bunch object>¶

__init__(name='', description='', type='system', deleted=False)¶: Initialize self. See help(type(self)) for accurate signature.

name¶

description¶

type¶

deleted¶

property is_repository_admin_role¶

create_time¶

groups¶

id¶

repositories¶

table = Table('role', MetaData(), Column('id', Integer(), table=<role>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<role>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<role>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('name', String(length=255), table=<role>), Column('description', TEXT(), table=<role>), Column('type', String(length=40), table=<role>), Column('deleted', Boolean(), table=<role>, default=ColumnDefault(False)), schema=None)¶

update_time¶

users¶

class tool_shed.webapp.model.UserGroupAssociation(user, group)[source]¶

Bases: object

__init__(user, group)¶: Initialize self. See help(type(self)) for accurate signature.

user¶

group¶

create_time¶

group_id¶

id¶

table = Table('user_group_association', MetaData(), Column('id', Integer(), table=<user_group_association>, primary_key=True, nullable=False), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<user_group_association>), Column('group_id', Integer(), ForeignKey('galaxy_group.id'), table=<user_group_association>), Column('create_time', DateTime(), table=<user_group_association>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<user_group_association>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), schema=None)¶

update_time¶

user_id¶

class tool_shed.webapp.model.UserRoleAssociation(user, role)[source]¶

Bases: object

__init__(user, role)¶: Initialize self. See help(type(self)) for accurate signature.

user¶

role¶

create_time¶

id¶

non_private_roles¶

role_id¶

table = Table('user_role_association', MetaData(), Column('id', Integer(), table=<user_role_association>, primary_key=True, nullable=False), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<user_role_association>), Column('role_id', Integer(), ForeignKey('role.id'), table=<user_role_association>), Column('create_time', DateTime(), table=<user_role_association>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<user_role_association>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), schema=None)¶

update_time¶

user_id¶

class tool_shed.webapp.model.GroupRoleAssociation(group, role)[source]¶

Bases: object

__init__(group, role)¶: Initialize self. See help(type(self)) for accurate signature.

group¶

role¶

create_time¶

group_id¶

id¶

role_id¶

table = Table('group_role_association', MetaData(), Column('id', Integer(), table=<group_role_association>, primary_key=True, nullable=False), Column('group_id', Integer(), ForeignKey('galaxy_group.id'), table=<group_role_association>), Column('role_id', Integer(), ForeignKey('role.id'), table=<group_role_association>), Column('create_time', DateTime(), table=<group_role_association>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<group_role_association>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), schema=None)¶

update_time¶

class tool_shed.webapp.model.RepositoryRoleAssociation(repository, role)[source]¶

Bases: object

__init__(repository, role)¶: Initialize self. See help(type(self)) for accurate signature.

repository¶

role¶

create_time¶

id¶

repository_id¶

role_id¶

table = Table('repository_role_association', MetaData(), Column('id', Integer(), table=<repository_role_association>, primary_key=True, nullable=False), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_role_association>), Column('role_id', Integer(), ForeignKey('role.id'), table=<repository_role_association>), Column('create_time', DateTime(), table=<repository_role_association>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository_role_association>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), schema=None)¶

update_time¶

class tool_shed.webapp.model.GalaxySession(id=None, user=None, remote_host=None, remote_addr=None, referer=None, current_history=None, session_key=None, is_valid=False, prev_session_id=None, last_action=None)[source]¶

Bases: object

__init__(id=None, user=None, remote_host=None, remote_addr=None, referer=None, current_history=None, session_key=None, is_valid=False, prev_session_id=None, last_action=None)¶: Initialize self. See help(type(self)) for accurate signature.

id¶

user¶

remote_host¶

remote_addr¶

referer¶

session_key¶

is_valid¶

prev_session_id¶

last_action¶

create_time¶

table = Table('galaxy_session', MetaData(), Column('id', Integer(), table=<galaxy_session>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<galaxy_session>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<galaxy_session>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<galaxy_session>), Column('remote_host', String(length=255), table=<galaxy_session>), Column('remote_addr', String(length=255), table=<galaxy_session>), Column('referer', TEXT(), table=<galaxy_session>), Column('session_key', TrimmedString(length=255), table=<galaxy_session>), Column('is_valid', Boolean(), table=<galaxy_session>, default=ColumnDefault(False)), Column('prev_session_id', Integer(), table=<galaxy_session>), Column('last_action', DateTime(), table=<galaxy_session>), schema=None)¶

update_time¶

user_id¶

class tool_shed.webapp.model.Repository(id=None, name=None, type=None, remote_repository_url=None, homepage_url=None, description=None, long_description=None, user_id=None, private=False, deleted=None, email_alerts=None, times_downloaded=0, deprecated=False, create_time=None)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'name', 'type', 'remote_repository_url', 'homepage_url', 'description', 'user_id', 'private', 'deleted', 'times_downloaded', 'deprecated', 'create_time']¶

dict_element_visible_keys = ['id', 'name', 'type', 'remote_repository_url', 'homepage_url', 'description', 'long_description', 'user_id', 'private', 'deleted', 'times_downloaded', 'deprecated', 'create_time']¶

file_states = <galaxy.util.bunch.Bunch object>¶

__init__(id=None, name=None, type=None, remote_repository_url=None, homepage_url=None, description=None, long_description=None, user_id=None, private=False, deleted=None, email_alerts=None, times_downloaded=0, deprecated=False, create_time=None)¶: Initialize self. See help(type(self)) for accurate signature.

id¶

name¶

type¶

remote_repository_url¶

homepage_url¶

description¶

long_description¶

user_id¶

private¶

deleted¶

email_alerts¶

times_downloaded¶

deprecated¶

create_time¶

property hg_repo¶

property admin_role¶

allow_push()[source]¶

can_change_type()[source]¶

can_change_type_to(app, new_type_label)[source]¶

get_changesets_for_setting_metadata(app)[source]¶

get_repository_dependencies(app, changeset, toolshed_url)[source]¶

get_type_class(app)[source]¶

get_tool_dependencies(app, changeset_revision)[source]¶

installable_revisions(app, sort_revisions=True)[source]¶

is_new()[source]¶

repo_path(app=None)[source]¶

revision()[source]¶

set_allow_push(usernames, remove_auth='')[source]¶

tip()[source]¶

to_dict(view='collection', value_mapper=None)[source]¶: Return item dictionary.

categories¶

downloadable_revisions¶

metadata_revisions¶

ratings¶

reviewers¶

reviews¶

roles¶

table = Table('repository', MetaData(), Column('id', Integer(), table=<repository>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<repository>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('name', TrimmedString(length=255), table=<repository>), Column('type', TrimmedString(length=255), table=<repository>), Column('remote_repository_url', TrimmedString(length=255), table=<repository>), Column('homepage_url', TrimmedString(length=255), table=<repository>), Column('description', TEXT(), table=<repository>), Column('long_description', TEXT(), table=<repository>), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<repository>), Column('private', Boolean(), table=<repository>, default=ColumnDefault(False)), Column('deleted', Boolean(), table=<repository>, default=ColumnDefault(False)), Column('email_alerts', MutableJSONType(), table=<repository>), Column('times_downloaded', Integer(), table=<repository>), Column('deprecated', Boolean(), table=<repository>, default=ColumnDefault(False)), schema=None)¶

update_time¶

user¶

class tool_shed.webapp.model.RepositoryMetadata(id=None, repository_id=None, numeric_revision=None, changeset_revision=None, metadata=None, tool_versions=None, malicious=False, downloadable=False, missing_test_components=None, tools_functionally_correct=False, test_install_error=False, has_repository_dependencies=False, includes_datatypes=False, includes_tools=False, includes_tool_dependencies=False, includes_workflows=False)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'repository_id', 'numeric_revision', 'changeset_revision', 'malicious', 'downloadable', 'missing_test_components', 'has_repository_dependencies', 'includes_datatypes', 'includes_tools', 'includes_tool_dependencies', 'includes_tools_for_display_in_tool_panel', 'includes_workflows']¶

dict_element_visible_keys = ['id', 'repository_id', 'numeric_revision', 'changeset_revision', 'malicious', 'downloadable', 'missing_test_components', 'has_repository_dependencies', 'includes_datatypes', 'includes_tools', 'includes_tool_dependencies', 'includes_tools_for_display_in_tool_panel', 'includes_workflows', 'repository_dependencies']¶

__init__(id=None, repository_id=None, numeric_revision=None, changeset_revision=None, metadata=None, tool_versions=None, malicious=False, downloadable=False, missing_test_components=None, tools_functionally_correct=False, test_install_error=False, has_repository_dependencies=False, includes_datatypes=False, includes_tools=False, includes_tool_dependencies=False, includes_workflows=False)¶: Initialize self. See help(type(self)) for accurate signature.

id¶

repository_id¶

numeric_revision¶

changeset_revision¶

metadata¶

tool_versions¶

malicious¶

downloadable¶

missing_test_components¶

has_repository_dependencies¶

includes_datatypes¶

includes_tools¶

includes_tool_dependencies¶

includes_workflows¶

property includes_tools_for_display_in_tool_panel¶

property repository_dependencies¶

create_time¶

repository¶

reviews¶

table = Table('repository_metadata', MetaData(), Column('id', Integer(), table=<repository_metadata>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<repository_metadata>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository_metadata>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_metadata>), Column('changeset_revision', TrimmedString(length=255), table=<repository_metadata>), Column('numeric_revision', Integer(), table=<repository_metadata>), Column('metadata', MutableJSONType(), table=<repository_metadata>), Column('tool_versions', MutableJSONType(), table=<repository_metadata>), Column('malicious', Boolean(), table=<repository_metadata>, default=ColumnDefault(False)), Column('downloadable', Boolean(), table=<repository_metadata>, default=ColumnDefault(True)), Column('missing_test_components', Boolean(), table=<repository_metadata>, default=ColumnDefault(False)), Column('has_repository_dependencies', Boolean(), table=<repository_metadata>, default=ColumnDefault(False)), Column('includes_datatypes', Boolean(), table=<repository_metadata>, default=ColumnDefault(False)), Column('includes_tools', Boolean(), table=<repository_metadata>, default=ColumnDefault(False)), Column('includes_tool_dependencies', Boolean(), table=<repository_metadata>, default=ColumnDefault(False)), Column('includes_workflows', Boolean(), table=<repository_metadata>, default=ColumnDefault(False)), schema=None)¶

update_time¶

class tool_shed.webapp.model.RepositoryReview(repository_id=None, changeset_revision=None, user_id=None, rating=None, deleted=False)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'repository_id', 'changeset_revision', 'user_id', 'rating', 'deleted']¶

dict_element_visible_keys = ['id', 'repository_id', 'changeset_revision', 'user_id', 'rating', 'deleted']¶

approved_states = <galaxy.util.bunch.Bunch object>¶

__init__(repository_id=None, changeset_revision=None, user_id=None, rating=None, deleted=False)¶: Initialize self. See help(type(self)) for accurate signature.

repository_id¶

changeset_revision¶

user_id¶

rating¶

deleted¶

approved¶

component_reviews¶

create_time¶

id¶

private_component_reviews¶

repository¶

repository_metadata¶

table = Table('repository_review', MetaData(), Column('id', Integer(), table=<repository_review>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<repository_review>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository_review>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_review>), Column('changeset_revision', TrimmedString(length=255), table=<repository_review>), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<repository_review>, nullable=False), Column('approved', TrimmedString(length=255), table=<repository_review>), Column('rating', Integer(), table=<repository_review>), Column('deleted', Boolean(), table=<repository_review>, default=ColumnDefault(False)), schema=None)¶

update_time¶

user¶

class tool_shed.webapp.model.ComponentReview(repository_review_id=None, component_id=None, comment=None, private=False, approved=False, rating=None, deleted=False)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'repository_review_id', 'component_id', 'private', 'approved', 'rating', 'deleted']¶

dict_element_visible_keys = ['id', 'repository_review_id', 'component_id', 'private', 'approved', 'rating', 'deleted']¶

approved_states = <galaxy.util.bunch.Bunch object>¶

__init__(repository_review_id=None, component_id=None, comment=None, private=False, approved=False, rating=None, deleted=False)¶: Initialize self. See help(type(self)) for accurate signature.

repository_review_id¶

component_id¶

comment¶

private¶

approved¶

rating¶

deleted¶

component¶

create_time¶

id¶

repository_review¶

table = Table('component_review', MetaData(), Column('id', Integer(), table=<component_review>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<component_review>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<component_review>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('repository_review_id', Integer(), ForeignKey('repository_review.id'), table=<component_review>), Column('component_id', Integer(), ForeignKey('component.id'), table=<component_review>), Column('comment', TEXT(), table=<component_review>), Column('private', Boolean(), table=<component_review>, default=ColumnDefault(False)), Column('approved', TrimmedString(length=255), table=<component_review>), Column('rating', Integer(), table=<component_review>), Column('deleted', Boolean(), table=<component_review>, default=ColumnDefault(False)), schema=None)¶

update_time¶

class tool_shed.webapp.model.Component(name=None, description=None)[source]¶

Bases: object

__init__(name=None, description=None)¶: Initialize self. See help(type(self)) for accurate signature.

name¶

description¶

id¶

table = Table('component', MetaData(), Column('id', Integer(), table=<component>, primary_key=True, nullable=False), Column('name', TrimmedString(length=255), table=<component>), Column('description', TEXT(), table=<component>), schema=None)¶

class tool_shed.webapp.model.ItemRatingAssociation(id=None, user=None, item=None, rating=0, comment='')[source]¶

Bases: object

__init__(id=None, user=None, item=None, rating=0, comment='')[source]¶: Initialize self. See help(type(self)) for accurate signature.

set_item(item)[source]¶: Set association’s item.

class tool_shed.webapp.model.RepositoryRatingAssociation(id=None, user=None, item=None, rating=0, comment='')[source]¶

Bases: tool_shed.webapp.model.ItemRatingAssociation, object

set_item(repository)[source]¶: Set association’s item.

__init__(id=None, user=None, item=None, rating=0, comment='')¶: Initialize self. See help(type(self)) for accurate signature.

comment¶

create_time¶

id¶

rating¶

repository¶

repository_id¶

table = Table('repository_rating_association', MetaData(), Column('id', Integer(), table=<repository_rating_association>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<repository_rating_association>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<repository_rating_association>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_rating_association>), Column('user_id', Integer(), ForeignKey('galaxy_user.id'), table=<repository_rating_association>), Column('rating', Integer(), table=<repository_rating_association>), Column('comment', TEXT(), table=<repository_rating_association>), schema=None)¶

update_time¶

user¶

user_id¶

class tool_shed.webapp.model.Category(name=None, description=None, deleted=False)[source]¶

Bases: galaxy.util.dictifiable.Dictifiable, object

dict_collection_visible_keys = ['id', 'name', 'description', 'deleted']¶

dict_element_visible_keys = ['id', 'name', 'description', 'deleted']¶

__init__(name=None, description=None, deleted=False)¶: Initialize self. See help(type(self)) for accurate signature.

name¶

description¶

deleted¶

create_time¶

id¶

repositories¶

table = Table('category', MetaData(), Column('id', Integer(), table=<category>, primary_key=True, nullable=False), Column('create_time', DateTime(), table=<category>, default=ColumnDefault(<function datetime.utcnow>)), Column('update_time', DateTime(), table=<category>, onupdate=ColumnDefault(<function datetime.utcnow>), default=ColumnDefault(<function datetime.utcnow>)), Column('name', TrimmedString(length=255), table=<category>), Column('description', TEXT(), table=<category>), Column('deleted', Boolean(), table=<category>, default=ColumnDefault(False)), schema=None)¶

update_time¶

class tool_shed.webapp.model.RepositoryCategoryAssociation(repository=None, category=None)[source]¶

Bases: object

__init__(repository=None, category=None)¶: Initialize self. See help(type(self)) for accurate signature.

repository¶

category¶

category_id¶

id¶

repository_id¶

table = Table('repository_category_association', MetaData(), Column('id', Integer(), table=<repository_category_association>, primary_key=True, nullable=False), Column('repository_id', Integer(), ForeignKey('repository.id'), table=<repository_category_association>), Column('category_id', Integer(), ForeignKey('category.id'), table=<repository_category_association>), schema=None)¶

class tool_shed.webapp.model.Tag(id=None, type=None, parent_id=None, name=None)[source]¶

Bases: object

__init__(id=None, type=None, parent_id=None, name=None)¶: Initialize self. See help(type(self)) for accurate signature.

id¶

type¶

parent_id¶

name¶

children¶

table = Table('tag', MetaData(), Column('id', Integer(), table=<tag>, primary_key=True, nullable=False), Column('type', Integer(), table=<tag>), Column('parent_id', Integer(), ForeignKey('tag.id'), table=<tag>), Column('name', TrimmedString(length=255), table=<tag>), schema=None)¶

class tool_shed.webapp.model.ItemTagAssociation(id=None, user=None, item_id=None, tag_id=None, user_tname=None, value=None)[source]¶

Bases: object

__init__(id=None, user=None, item_id=None, tag_id=None, user_tname=None, value=None)[source]¶: Initialize self. See help(type(self)) for accurate signature.

class tool_shed.webapp.model.PostJobAction(action_type, workflow_step, output_name=None, action_arguments=None)[source]¶

Bases: object

__init__(action_type, workflow_step, output_name=None, action_arguments=None)[source]¶: Initialize self. See help(type(self)) for accurate signature.

class tool_shed.webapp.model.StoredWorkflowAnnotationAssociation[source]¶: Bases: object

class tool_shed.webapp.model.WorkflowStepAnnotationAssociation[source]¶: Bases: object

class tool_shed.webapp.model.Workflow[source]¶

Bases: object

__init__()[source]¶: Initialize self. See help(type(self)) for accurate signature.

class tool_shed.webapp.model.WorkflowStep[source]¶

Bases: object

__init__()[source]¶: Initialize self. See help(type(self)) for accurate signature.

get_or_add_input(input_name)[source]¶

property input_connections¶

class tool_shed.webapp.model.WorkflowStepInput[source]¶

Bases: object

__init__()[source]¶: Initialize self. See help(type(self)) for accurate signature.

class tool_shed.webapp.model.WorkflowStepConnection[source]¶

Bases: object

__init__()[source]¶: Initialize self. See help(type(self)) for accurate signature.

tool_shed.webapp.model.sort_by_attr(seq, attr)[source]¶: Sort the sequence of objects by object’s attribute Arguments: seq - the list or any sequence (including immutable one) of objects to sort. attr - the name of attribute to sort by

Subpackages¶

tool_shed.webapp.model.migrate package

Submodules¶

tool_shed.webapp.model.mapping module¶

Details of how the data model objects are mapped onto the relational database are encapsulated here.

tool_shed.webapp.model.mapping.now()¶: Return a new datetime representing UTC day and time.

class tool_shed.webapp.model.mapping.ToolShedModelMapping(model_modules, engine)[source]¶

Bases: galaxy.model.base.SharedModelMapping

security_agent: tool_shed.webapp.security.CommunityRBACAgent¶

shed_counter: tool_shed.webapp.util.shed_statistics.ShedCounter¶

create_tables: bool¶

tool_shed.webapp.model.mapping.init(file_path, url, engine_options=None, create_tables=False) → tool_shed.webapp.model.mapping.ToolShedModelMapping [source]¶: Connect mappings to the database