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galaxy.tools.data_manager package

Data Manager

Submodules

galaxy.tools.data_manager.manager module

class galaxy.tools.data_manager.manager.DataManagers(app: MinimalManagerApp, xml_filename=None)[source]

Bases: object

__init__(app: MinimalManagerApp, xml_filename=None)[source]
data_managers: Dict[str, DataManager]
managed_data_tables: Dict[str, DataManager]
load_from_xml(xml_filename, store_tool_path=True)[source]
load_manager_from_elem(data_manager_elem, tool_path=None, add_manager=True)[source]
add_manager(data_manager)[source]
get_manager(*args, **kwds)[source]
remove_manager(manager_ids)[source]
class galaxy.tools.data_manager.manager.DataManager(data_managers, elem=None, tool_path=None)[source]

Bases: object

GUID_TYPE = 'data_manager'
DEFAULT_VERSION = '0.0.1'
__init__(data_managers, elem=None, tool_path=None)[source]
load_from_element(elem, tool_path)[source]
property id
load_tool(tool_filename, guid=None, data_manager_id=None, tool_shed_repository_id=None, tool_shed_repository=None)[source]
process_result(out_data)[source]
process_move(data_table_name, column_name, source_base_path, relative_symlinks=False, **kwd)[source]
process_value_translation(data_table_name, column_name, **kwd)[source]
get_tool_shed_repository_info_dict()[source]