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galaxy.tool_util.ontologies package

Submodules

galaxy.tool_util.ontologies.ontology_data module

class galaxy.tool_util.ontologies.ontology_data.OntologyData(xrefs, edam_operations, edam_topics)

Bases: tuple

property xrefs

Alias for field number 0

property edam_operations

Alias for field number 1

property edam_topics

Alias for field number 2

galaxy.tool_util.ontologies.ontology_data.biotools_reference(xrefs)

galaxy.tool_util.ontologies.ontology_data.legacy_biotools_external_reference(all_ids: List[str]) → Optional[str]

galaxy.tool_util.ontologies.ontology_data.expand_ontology_data(tool_source: ToolSource, all_ids: List[str], biotools_metadata_source: Optional[BiotoolsMetadataSource]) → OntologyData