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galaxy
galaxy.actions
galaxy.actions.library
galaxy.app
galaxy.app_unittest_utils
galaxy.app_unittest_utils.galaxy_mock
galaxy.app_unittest_utils.tools_support
galaxy.auth
galaxy.auth.providers
galaxy.auth.providers.alwaysreject
galaxy.auth.providers.ldap_ad
galaxy.auth.providers.localdb
galaxy.auth.providers.pam_auth
galaxy.auth.util
galaxy.authnz
galaxy.authnz.custos_authnz
galaxy.authnz.managers
galaxy.authnz.psa_authnz
galaxy.celery
galaxy.celery.tasks
galaxy.config
galaxy.config.config_manage
galaxy.config.schema
galaxy.config.script
galaxy.config_watchers
galaxy.datatypes
galaxy.datatypes.annotation
galaxy.datatypes.anvio
galaxy.datatypes.assembly
galaxy.datatypes.binary
galaxy.datatypes.blast
galaxy.datatypes.checkers
galaxy.datatypes.chrominfo
galaxy.datatypes.constructive_solid_geometry
galaxy.datatypes.converters
galaxy.datatypes.converters.bed_to_gff_converter
galaxy.datatypes.converters.fasta_to_len
galaxy.datatypes.converters.fasta_to_tabular_converter
galaxy.datatypes.converters.fastq_to_fqtoc
galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
galaxy.datatypes.converters.fastqsolexa_to_qual_converter
galaxy.datatypes.converters.gff_to_bed_converter
galaxy.datatypes.converters.gff_to_interval_index_converter
galaxy.datatypes.converters.interval_to_bed_converter
galaxy.datatypes.converters.interval_to_bedstrict_converter
galaxy.datatypes.converters.interval_to_fli
galaxy.datatypes.converters.interval_to_interval_index_converter
galaxy.datatypes.converters.lped_to_fped_converter
galaxy.datatypes.converters.lped_to_pbed_converter
galaxy.datatypes.converters.maf_to_fasta_converter
galaxy.datatypes.converters.maf_to_interval_converter
galaxy.datatypes.converters.parquet_to_csv_converter
galaxy.datatypes.converters.pbed_ldreduced_converter
galaxy.datatypes.converters.pbed_to_lped_converter
galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
galaxy.datatypes.converters.pileup_to_interval_index_converter
galaxy.datatypes.converters.ref_to_seq_taxonomy_converter
galaxy.datatypes.converters.tabular_csv
galaxy.datatypes.converters.vcf_to_interval_index_converter
galaxy.datatypes.converters.wiggle_to_simple_converter
galaxy.datatypes.coverage
galaxy.datatypes.data
galaxy.datatypes.dataproviders
galaxy.datatypes.dataproviders.base
galaxy.datatypes.dataproviders.chunk
galaxy.datatypes.dataproviders.column
galaxy.datatypes.dataproviders.dataset
galaxy.datatypes.dataproviders.decorators
galaxy.datatypes.dataproviders.exceptions
galaxy.datatypes.dataproviders.external
galaxy.datatypes.dataproviders.hierarchy
galaxy.datatypes.dataproviders.line
galaxy.datatypes.display_applications
galaxy.datatypes.display_applications.application
galaxy.datatypes.display_applications.parameters
galaxy.datatypes.display_applications.util
galaxy.datatypes.flow
galaxy.datatypes.genetics
galaxy.datatypes.gis
galaxy.datatypes.goldenpath
galaxy.datatypes.graph
galaxy.datatypes.hdf5
galaxy.datatypes.images
galaxy.datatypes.interval
galaxy.datatypes.isa
galaxy.datatypes.media
galaxy.datatypes.metacyto
galaxy.datatypes.metadata
galaxy.datatypes.microarrays
galaxy.datatypes.molecules
galaxy.datatypes.mothur
galaxy.datatypes.msa
galaxy.datatypes.neo4j
galaxy.datatypes.ngsindex
galaxy.datatypes.phylip
galaxy.datatypes.plant_tribes
galaxy.datatypes.proteomics
galaxy.datatypes.qiime2
galaxy.datatypes.qualityscore
galaxy.datatypes.registry
galaxy.datatypes.sequence
galaxy.datatypes.sniff
galaxy.datatypes.spaln
galaxy.datatypes.speech
galaxy.datatypes.tabular
galaxy.datatypes.text
galaxy.datatypes.tracks
galaxy.datatypes.triples
galaxy.datatypes.upload_util
galaxy.datatypes.util
galaxy.datatypes.util.generic_util
galaxy.datatypes.util.gff_util
galaxy.datatypes.util.maf_utilities
galaxy.datatypes.xml
galaxy.dependencies
galaxy.di
galaxy.exceptions
galaxy.exceptions.error_codes
galaxy.files
galaxy.files.sources
galaxy.files.sources.anvil
galaxy.files.sources.basespace
galaxy.files.sources.dropbox
galaxy.files.sources.ftp
galaxy.files.sources.galaxy
galaxy.files.sources.googlecloudstorage
galaxy.files.sources.googledrive
galaxy.files.sources.onedata
galaxy.files.sources.posix
galaxy.files.sources.s3fs
galaxy.files.sources.ssh
galaxy.files.sources.webdav
galaxy.files.unittest_utils
galaxy.files.uris
galaxy.forms
galaxy.forms.forms
galaxy.job_execution
galaxy.job_execution.actions
galaxy.job_execution.actions.post
galaxy.job_execution.compute_environment
galaxy.job_execution.datasets
galaxy.job_execution.output_collect
galaxy.job_execution.ports
galaxy.job_execution.ports.view
galaxy.job_execution.setup
galaxy.job_metrics
galaxy.job_metrics.formatting
galaxy.job_metrics.instrumenters
galaxy.job_metrics.instrumenters.cgroup
galaxy.job_metrics.instrumenters.core
galaxy.job_metrics.instrumenters.cpuinfo
galaxy.job_metrics.instrumenters.env
galaxy.job_metrics.instrumenters.hostname
galaxy.job_metrics.instrumenters.meminfo
galaxy.job_metrics.instrumenters.uname
galaxy.job_metrics.safety
galaxy.jobs
galaxy.jobs.command_factory
galaxy.jobs.dynamic_tool_destination
galaxy.jobs.handler
galaxy.jobs.manager
galaxy.jobs.mapper
galaxy.jobs.rule_helper
galaxy.jobs.rules
galaxy.jobs.runners
galaxy.jobs.runners.chronos
galaxy.jobs.runners.cli
galaxy.jobs.runners.condor
galaxy.jobs.runners.drmaa
galaxy.jobs.runners.godocker
galaxy.jobs.runners.kubernetes
galaxy.jobs.runners.local
galaxy.jobs.runners.pbs
galaxy.jobs.runners.pulsar
galaxy.jobs.runners.slurm
galaxy.jobs.runners.state_handler_factory
galaxy.jobs.runners.state_handlers
galaxy.jobs.runners.state_handlers.resubmit
galaxy.jobs.runners.tasks
galaxy.jobs.runners.univa
galaxy.jobs.runners.util
galaxy.jobs.runners.util.cli
galaxy.jobs.runners.util.cli.factory
galaxy.jobs.runners.util.cli.job
galaxy.jobs.runners.util.cli.job.lsf
galaxy.jobs.runners.util.cli.job.pbs
galaxy.jobs.runners.util.cli.job.slurm
galaxy.jobs.runners.util.cli.job.slurm_torque
galaxy.jobs.runners.util.cli.job.torque
galaxy.jobs.runners.util.cli.shell
galaxy.jobs.runners.util.cli.shell.local
galaxy.jobs.runners.util.cli.shell.rsh
galaxy.jobs.runners.util.condor
galaxy.jobs.runners.util.env
galaxy.jobs.runners.util.external
galaxy.jobs.runners.util.job_script
galaxy.jobs.runners.util.kill
galaxy.jobs.runners.util.process_groups
galaxy.jobs.runners.util.pykube_util
galaxy.jobs.runners.util.sudo
galaxy.jobs.splitters
galaxy.jobs.splitters.basic
galaxy.jobs.splitters.multi
galaxy.jobs.stock_rules
galaxy.main
galaxy.main_config
galaxy.managers
galaxy.managers.annotatable
galaxy.managers.api_keys
galaxy.managers.base
galaxy.managers.citations
galaxy.managers.cloud
galaxy.managers.cloudauthzs
galaxy.managers.collections
galaxy.managers.collections_util
galaxy.managers.configuration
galaxy.managers.context
galaxy.managers.datasets
galaxy.managers.datatypes
galaxy.managers.deletable
galaxy.managers.display_applications
galaxy.managers.executables
galaxy.managers.folders
galaxy.managers.genomes
galaxy.managers.group_roles
galaxy.managers.group_users
galaxy.managers.groups
galaxy.managers.hdas
galaxy.managers.hdcas
galaxy.managers.histories
galaxy.managers.history_contents
galaxy.managers.interactivetool
galaxy.managers.jobs
galaxy.managers.lddas
galaxy.managers.libraries
galaxy.managers.library_datasets
galaxy.managers.licenses
galaxy.managers.markdown_parse
galaxy.managers.markdown_util
galaxy.managers.metrics
galaxy.managers.model_stores
galaxy.managers.pages
galaxy.managers.quotas
galaxy.managers.ratable
galaxy.managers.rbac_secured
galaxy.managers.remote_files
galaxy.managers.roles
galaxy.managers.secured
galaxy.managers.session
galaxy.managers.sharable
galaxy.managers.taggable
galaxy.managers.tags
galaxy.managers.tool_data
galaxy.managers.tools
galaxy.managers.users
galaxy.managers.visualizations
galaxy.managers.workflows
galaxy.metadata
galaxy.metadata.set_metadata
galaxy.model
galaxy.model.base
galaxy.model.custom_types
galaxy.model.database_heartbeat
galaxy.model.database_utils
galaxy.model.dataset_collections
galaxy.model.dataset_collections.builder
galaxy.model.dataset_collections.matching
galaxy.model.dataset_collections.registry
galaxy.model.dataset_collections.structure
galaxy.model.dataset_collections.subcollections
galaxy.model.dataset_collections.type_description
galaxy.model.dataset_collections.types
galaxy.model.dataset_collections.types.list
galaxy.model.dataset_collections.types.paired
galaxy.model.deferred
galaxy.model.index_filter_util
galaxy.model.item_attrs
galaxy.model.mapping
galaxy.model.metadata
galaxy.model.migrations
galaxy.model.migrations.scripts
galaxy.model.migrations.util
galaxy.model.none_like
galaxy.model.orm
galaxy.model.orm.engine_factory
galaxy.model.orm.now
galaxy.model.orm.scripts
galaxy.model.orm.util
galaxy.model.scoped_session
galaxy.model.search
galaxy.model.security
galaxy.model.store
galaxy.model.store.build_objects
galaxy.model.store.discover
galaxy.model.store.load_objects
galaxy.model.tags
galaxy.model.tool_shed_install
galaxy.model.tool_shed_install.mapping
galaxy.model.triggers
galaxy.model.triggers.history_update_time_field
galaxy.model.triggers.update_audit_table
galaxy.model.triggers.utils
galaxy.model.unittest_utils
galaxy.model.unittest_utils.data_app
galaxy.model.unittest_utils.store_fixtures
galaxy.objectstore
galaxy.objectstore.azure_blob
galaxy.objectstore.cloud
galaxy.objectstore.irods
galaxy.objectstore.pithos
galaxy.objectstore.pulsar
galaxy.objectstore.s3
galaxy.objectstore.s3_multipart_upload
galaxy.objectstore.unittest_utils
galaxy.queue_worker
galaxy.queues
galaxy.quota
galaxy.schema
galaxy.schema.fetch_data
galaxy.schema.fields
galaxy.schema.remote_files
galaxy.schema.schema
galaxy.schema.tasks
galaxy.schema.types
galaxy.security
galaxy.security.idencoding
galaxy.security.object_wrapper
galaxy.security.passwords
galaxy.security.ssh_util
galaxy.security.validate_user_input
galaxy.security.vault
galaxy.selenium
galaxy.selenium.cli
galaxy.selenium.context
galaxy.selenium.driver_factory
galaxy.selenium.has_driver
galaxy.selenium.jupyter_context
galaxy.selenium.navigates_galaxy
galaxy.selenium.scripts
galaxy.selenium.scripts.dump_tour
galaxy.selenium.sizzle
galaxy.selenium.smart_components
galaxy.selenium.toolbox
galaxy.selenium.toolbox.filters
galaxy.structured_app
galaxy.tool_shed
galaxy.tool_shed.galaxy_install
galaxy.tool_shed.galaxy_install.install_manager
galaxy.tool_shed.galaxy_install.installed_repository_manager
galaxy.tool_shed.galaxy_install.metadata
galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager
galaxy.tool_shed.galaxy_install.repository_dependencies
galaxy.tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager
galaxy.tool_shed.galaxy_install.tools
galaxy.tool_shed.galaxy_install.tools.data_manager
galaxy.tool_shed.galaxy_install.tools.tool_panel_manager
galaxy.tool_shed.galaxy_install.update_repository_manager
galaxy.tool_shed.metadata
galaxy.tool_shed.metadata.metadata_generator
galaxy.tool_shed.repository_type
galaxy.tool_shed.tools
galaxy.tool_shed.tools.data_table_manager
galaxy.tool_shed.tools.tool_validator
galaxy.tool_shed.util
galaxy.tool_shed.util.basic_util
galaxy.tool_shed.util.container_util
galaxy.tool_shed.util.hg_util
galaxy.tool_shed.util.metadata_util
galaxy.tool_shed.util.repository_util
galaxy.tool_shed.util.shed_util_common
galaxy.tool_shed.util.tool_dependency_util
galaxy.tool_shed.util.tool_util
galaxy.tool_util
galaxy.tool_util.biotools
galaxy.tool_util.biotools.interface
galaxy.tool_util.biotools.source
galaxy.tool_util.client
galaxy.tool_util.client.staging
galaxy.tool_util.cwl
galaxy.tool_util.cwl.cwltool_deps
galaxy.tool_util.cwl.parser
galaxy.tool_util.cwl.representation
galaxy.tool_util.cwl.runnable
galaxy.tool_util.cwl.runtime_actions
galaxy.tool_util.cwl.schema
galaxy.tool_util.cwl.util
galaxy.tool_util.deps
galaxy.tool_util.deps.brew_exts
galaxy.tool_util.deps.brew_util
galaxy.tool_util.deps.commands
galaxy.tool_util.deps.conda_compat
galaxy.tool_util.deps.conda_util
galaxy.tool_util.deps.container_classes
galaxy.tool_util.deps.container_resolvers
galaxy.tool_util.deps.container_resolvers.explicit
galaxy.tool_util.deps.container_resolvers.mulled
galaxy.tool_util.deps.container_volumes
galaxy.tool_util.deps.containers
galaxy.tool_util.deps.dependencies
galaxy.tool_util.deps.docker_util
galaxy.tool_util.deps.dockerfiles
galaxy.tool_util.deps.installable
galaxy.tool_util.deps.mulled
galaxy.tool_util.deps.mulled.get_tests
galaxy.tool_util.deps.mulled.mulled_build
galaxy.tool_util.deps.mulled.mulled_build_channel
galaxy.tool_util.deps.mulled.mulled_build_files
galaxy.tool_util.deps.mulled.mulled_build_tool
galaxy.tool_util.deps.mulled.mulled_hash
galaxy.tool_util.deps.mulled.mulled_list
galaxy.tool_util.deps.mulled.mulled_search
galaxy.tool_util.deps.mulled.mulled_update_singularity_containers
galaxy.tool_util.deps.mulled.util
galaxy.tool_util.deps.requirements
galaxy.tool_util.deps.resolvers
galaxy.tool_util.deps.resolvers.brewed_tool_shed_packages
galaxy.tool_util.deps.resolvers.conda
galaxy.tool_util.deps.resolvers.galaxy_packages
galaxy.tool_util.deps.resolvers.homebrew
galaxy.tool_util.deps.resolvers.lmod
galaxy.tool_util.deps.resolvers.modules
galaxy.tool_util.deps.resolvers.resolver_mixins
galaxy.tool_util.deps.resolvers.tool_shed_packages
galaxy.tool_util.deps.resolvers.unlinked_tool_shed_packages
galaxy.tool_util.deps.singularity_util
galaxy.tool_util.deps.views
galaxy.tool_util.edam_util
galaxy.tool_util.fetcher
galaxy.tool_util.lint
galaxy.tool_util.linters
galaxy.tool_util.linters.citations
galaxy.tool_util.linters.command
galaxy.tool_util.linters.cwl
galaxy.tool_util.linters.general
galaxy.tool_util.linters.help
galaxy.tool_util.linters.inputs
galaxy.tool_util.linters.outputs
galaxy.tool_util.linters.stdio
galaxy.tool_util.linters.tests
galaxy.tool_util.linters.xml_order
galaxy.tool_util.loader
galaxy.tool_util.loader_directory
galaxy.tool_util.locations
galaxy.tool_util.locations.dockstore
galaxy.tool_util.locations.file
galaxy.tool_util.locations.http
galaxy.tool_util.ontologies
galaxy.tool_util.ontologies.ontology_data
galaxy.tool_util.output_checker
galaxy.tool_util.parser
galaxy.tool_util.parser.cwl
galaxy.tool_util.parser.factory
galaxy.tool_util.parser.interface
galaxy.tool_util.parser.output_actions
galaxy.tool_util.parser.output_collection_def
galaxy.tool_util.parser.output_objects
galaxy.tool_util.parser.stdio
galaxy.tool_util.parser.util
galaxy.tool_util.parser.xml
galaxy.tool_util.parser.yaml
galaxy.tool_util.provided_metadata
galaxy.tool_util.toolbox
galaxy.tool_util.toolbox.base
galaxy.tool_util.toolbox.filters
galaxy.tool_util.toolbox.integrated_panel
galaxy.tool_util.toolbox.lineages
galaxy.tool_util.toolbox.lineages.factory
galaxy.tool_util.toolbox.lineages.interface
galaxy.tool_util.toolbox.panel
galaxy.tool_util.toolbox.parser
galaxy.tool_util.toolbox.views
galaxy.tool_util.toolbox.views.definitions
galaxy.tool_util.toolbox.views.edam
galaxy.tool_util.toolbox.views.interface
galaxy.tool_util.toolbox.views.sources
galaxy.tool_util.toolbox.views.static
galaxy.tool_util.toolbox.watcher
galaxy.tool_util.unittest_utils
galaxy.tool_util.unittest_utils.sample_data
galaxy.tool_util.verify
galaxy.tool_util.verify.asserts
galaxy.tool_util.verify.asserts.archive
galaxy.tool_util.verify.asserts.hdf5
galaxy.tool_util.verify.asserts.size
galaxy.tool_util.verify.asserts.tabular
galaxy.tool_util.verify.asserts.text
galaxy.tool_util.verify.asserts.xml
galaxy.tool_util.verify.interactor
galaxy.tool_util.verify.script
galaxy.tool_util.verify.test_data
galaxy.tool_util.verify.wait
galaxy.tools
galaxy.tools.actions
galaxy.tools.actions.data_manager
galaxy.tools.actions.data_source
galaxy.tools.actions.history_imp_exp
galaxy.tools.actions.metadata
galaxy.tools.actions.model_operations
galaxy.tools.actions.upload
galaxy.tools.actions.upload_common
galaxy.tools.biotools
galaxy.tools.cache
galaxy.tools.data
galaxy.tools.data_fetch
galaxy.tools.data_manager
galaxy.tools.data_manager.manager
galaxy.tools.error_reports
galaxy.tools.error_reports.plugins
galaxy.tools.error_reports.plugins.base_git
galaxy.tools.error_reports.plugins.email
galaxy.tools.error_reports.plugins.github
galaxy.tools.error_reports.plugins.gitlab
galaxy.tools.error_reports.plugins.influxdb
galaxy.tools.error_reports.plugins.json
galaxy.tools.error_reports.plugins.sentry
galaxy.tools.errors
galaxy.tools.evaluation
galaxy.tools.exception_handling
galaxy.tools.execute
galaxy.tools.expressions
galaxy.tools.expressions.evaluation
galaxy.tools.expressions.script
galaxy.tools.expressions.util
galaxy.tools.filters
galaxy.tools.imp_exp
galaxy.tools.imp_exp.export_history
galaxy.tools.imp_exp.unpack_tar_gz_archive
galaxy.tools.parameters
galaxy.tools.parameters.basic
galaxy.tools.parameters.dataset_matcher
galaxy.tools.parameters.dynamic_options
galaxy.tools.parameters.grouping
galaxy.tools.parameters.history_query
galaxy.tools.parameters.input_translation
galaxy.tools.parameters.meta
galaxy.tools.parameters.sanitize
galaxy.tools.parameters.validation
galaxy.tools.parameters.wrapped
galaxy.tools.parameters.wrapped_json
galaxy.tools.recommendations
galaxy.tools.remote_tool_eval
galaxy.tools.repositories
galaxy.tools.search
galaxy.tools.special_tools
galaxy.tools.test
galaxy.tools.util
galaxy.tools.util.galaxyops
galaxy.tools.util.maf_utilities
galaxy.tools.wrappers
galaxy.tours
galaxy.tours.validate
galaxy.util
galaxy.util.aliaspickler
galaxy.util.bool_expressions
galaxy.util.bunch
galaxy.util.bytesize
galaxy.util.checkers
galaxy.util.commands
galaxy.util.compression_utils
galaxy.util.custom_logging
galaxy.util.custom_logging.fluent_log
galaxy.util.dbkeys
galaxy.util.dictifiable
galaxy.util.dynamic
galaxy.util.expressions
galaxy.util.facts
galaxy.util.filelock
galaxy.util.form_builder
galaxy.util.hash_util
galaxy.util.heartbeat
galaxy.util.image_util
galaxy.util.inflection
galaxy.util.json
galaxy.util.jstree
galaxy.util.lazy_process
galaxy.util.monitors
galaxy.util.odict
galaxy.util.oset
galaxy.util.path
galaxy.util.path.ntpath
galaxy.util.path.posixpath
galaxy.util.permutations
galaxy.util.plugin_config
galaxy.util.properties
galaxy.util.renamed_temporary_file
galaxy.util.resources
galaxy.util.rules_dsl
galaxy.util.sanitize_html
galaxy.util.script
galaxy.util.search
galaxy.util.simplegraph
galaxy.util.sleeper
galaxy.util.sockets
galaxy.util.specs
galaxy.util.sqlite
galaxy.util.submodules
galaxy.util.task
galaxy.util.template
galaxy.util.tool_shed
galaxy.util.tool_shed.common_util
galaxy.util.tool_shed.encoding_util
galaxy.util.tool_shed.xml_util
galaxy.util.tool_version
galaxy.util.topsort
galaxy.util.ucsc
galaxy.util.validation
galaxy.util.watcher
galaxy.util.xml_macros
galaxy.util.yaml_util
galaxy.util.zipstream
galaxy.version
galaxy.visualization
galaxy.visualization.data_providers
galaxy.visualization.data_providers.basic
galaxy.visualization.data_providers.cigar
galaxy.visualization.data_providers.genome
galaxy.visualization.data_providers.phyloviz
galaxy.visualization.data_providers.phyloviz.baseparser
galaxy.visualization.data_providers.phyloviz.newickparser
galaxy.visualization.data_providers.phyloviz.nexusparser
galaxy.visualization.data_providers.phyloviz.phyloxmlparser
galaxy.visualization.data_providers.registry
galaxy.visualization.genome
galaxy.visualization.genomes
galaxy.visualization.plugins
galaxy.visualization.plugins.config_parser
galaxy.visualization.plugins.plugin
galaxy.visualization.plugins.registry
galaxy.visualization.plugins.resource_parser
galaxy.visualization.plugins.utils
galaxy.visualization.tracks
galaxy.web
galaxy.web.form_builder
galaxy.web.framework
galaxy.web.framework.base
galaxy.web.framework.decorators
galaxy.web.framework.helpers
galaxy.web.framework.helpers.grids
galaxy.web.framework.helpers.tags
galaxy.web.framework.middleware
galaxy.web.framework.middleware.error
galaxy.web.framework.middleware.profile
galaxy.web.framework.middleware.remoteuser
galaxy.web.framework.middleware.request_id
galaxy.web.framework.middleware.sqldebug
galaxy.web.framework.middleware.static
galaxy.web.framework.middleware.statsd
galaxy.web.framework.middleware.translogger
galaxy.web.framework.middleware.xforwardedhost
galaxy.web.legacy_framework
galaxy.web.legacy_framework.grids
galaxy.web.proxy
galaxy.web.short_term_storage
galaxy.web.statsd_client
galaxy.web_stack
galaxy.web_stack.gunicorn_config
galaxy.web_stack.handlers
galaxy.web_stack.message
galaxy.web_stack.transport
galaxy.webapps
galaxy.webapps.base
galaxy.webapps.base.api
galaxy.webapps.base.controller
galaxy.webapps.base.webapp
galaxy.webapps.galaxy
galaxy.webapps.galaxy.api
galaxy.webapps.galaxy.api.annotations
galaxy.webapps.galaxy.api.authenticate
galaxy.webapps.galaxy.api.cloud
galaxy.webapps.galaxy.api.cloudauthz
galaxy.webapps.galaxy.api.common
galaxy.webapps.galaxy.api.configuration
galaxy.webapps.galaxy.api.container_resolution
galaxy.webapps.galaxy.api.dataset_collections
galaxy.webapps.galaxy.api.datasets
galaxy.webapps.galaxy.api.datatypes
galaxy.webapps.galaxy.api.display_applications
galaxy.webapps.galaxy.api.dynamic_tools
galaxy.webapps.galaxy.api.extended_metadata
galaxy.webapps.galaxy.api.folder_contents
galaxy.webapps.galaxy.api.folders
galaxy.webapps.galaxy.api.forms
galaxy.webapps.galaxy.api.genomes
galaxy.webapps.galaxy.api.group_roles
galaxy.webapps.galaxy.api.group_users
galaxy.webapps.galaxy.api.groups
galaxy.webapps.galaxy.api.histories
galaxy.webapps.galaxy.api.history_contents
galaxy.webapps.galaxy.api.item_tags
galaxy.webapps.galaxy.api.job_files
galaxy.webapps.galaxy.api.job_lock
galaxy.webapps.galaxy.api.job_ports
galaxy.webapps.galaxy.api.jobs
galaxy.webapps.galaxy.api.libraries
galaxy.webapps.galaxy.api.library_contents
galaxy.webapps.galaxy.api.library_datasets
galaxy.webapps.galaxy.api.licenses
galaxy.webapps.galaxy.api.metrics
galaxy.webapps.galaxy.api.page_revisions
galaxy.webapps.galaxy.api.pages
galaxy.webapps.galaxy.api.plugins
galaxy.webapps.galaxy.api.provenance
galaxy.webapps.galaxy.api.quotas
galaxy.webapps.galaxy.api.remote_files
galaxy.webapps.galaxy.api.roles
galaxy.webapps.galaxy.api.sanitize_allow
galaxy.webapps.galaxy.api.search
galaxy.webapps.galaxy.api.short_term_storage
galaxy.webapps.galaxy.api.tags
galaxy.webapps.galaxy.api.tasks
galaxy.webapps.galaxy.api.tool_data
galaxy.webapps.galaxy.api.tool_dependencies
galaxy.webapps.galaxy.api.tool_entry_points
galaxy.webapps.galaxy.api.tool_shed_repositories
galaxy.webapps.galaxy.api.tools
galaxy.webapps.galaxy.api.toolshed
galaxy.webapps.galaxy.api.tours
galaxy.webapps.galaxy.api.trs_consumer
galaxy.webapps.galaxy.api.trs_search
galaxy.webapps.galaxy.api.uploads
galaxy.webapps.galaxy.api.users
galaxy.webapps.galaxy.api.visualizations
galaxy.webapps.galaxy.api.webhooks
galaxy.webapps.galaxy.api.workflows
galaxy.webapps.galaxy.buildapp
galaxy.webapps.galaxy.controllers
galaxy.webapps.galaxy.controllers.admin
galaxy.webapps.galaxy.controllers.admin_toolshed
galaxy.webapps.galaxy.controllers.async
galaxy.webapps.galaxy.controllers.authnz
galaxy.webapps.galaxy.controllers.data_manager
galaxy.webapps.galaxy.controllers.dataset
galaxy.webapps.galaxy.controllers.error
galaxy.webapps.galaxy.controllers.forms
galaxy.webapps.galaxy.controllers.history
galaxy.webapps.galaxy.controllers.page
galaxy.webapps.galaxy.controllers.root
galaxy.webapps.galaxy.controllers.shed_tool_static
galaxy.webapps.galaxy.controllers.tag
galaxy.webapps.galaxy.controllers.tool_runner
galaxy.webapps.galaxy.controllers.user
galaxy.webapps.galaxy.controllers.userskeys
galaxy.webapps.galaxy.controllers.visualization
galaxy.webapps.galaxy.controllers.workflow
galaxy.webapps.galaxy.fast_app
galaxy.webapps.galaxy.fast_factory
galaxy.webapps.galaxy.services
galaxy.webapps.galaxy.services.authenticate
galaxy.webapps.galaxy.services.base
galaxy.webapps.galaxy.services.dataset_collections
galaxy.webapps.galaxy.services.datasets
galaxy.webapps.galaxy.services.histories
galaxy.webapps.galaxy.services.history_contents
galaxy.webapps.galaxy.services.invocations
galaxy.webapps.galaxy.services.jobs
galaxy.webapps.galaxy.services.libraries
galaxy.webapps.galaxy.services.library_folder_contents
galaxy.webapps.galaxy.services.library_folders
galaxy.webapps.galaxy.services.pages
galaxy.webapps.galaxy.services.quotas
galaxy.webapps.galaxy.services.sharable
galaxy.webapps.galaxy.services.tools
galaxy.webapps.galaxy.services.users
galaxy.webapps.galaxy.services.visualizations
galaxy.webapps.galaxy.services.workflows
galaxy.webapps.galaxy.workers
galaxy.webapps.openapi
galaxy.webapps.openapi.utils
galaxy.webapps.reports
galaxy.webapps.reports.api
galaxy.webapps.reports.app
galaxy.webapps.reports.buildapp
galaxy.webapps.reports.config
galaxy.webapps.reports.controllers
galaxy.webapps.reports.controllers.history
galaxy.webapps.reports.controllers.home
galaxy.webapps.reports.controllers.jobs
galaxy.webapps.reports.controllers.query
galaxy.webapps.reports.controllers.root
galaxy.webapps.reports.controllers.system
galaxy.webapps.reports.controllers.tools
galaxy.webapps.reports.controllers.users
galaxy.webapps.reports.controllers.workflows
galaxy.webapps.reports.fast_app
galaxy.webapps.reports.fast_factory
galaxy.webapps.util
galaxy.webhooks
galaxy.work
galaxy.work.context
galaxy.workflow
galaxy.workflow.extract
galaxy.workflow.modules
galaxy.workflow.refactor
galaxy.workflow.refactor.execute
galaxy.workflow.refactor.schema
galaxy.workflow.render
galaxy.workflow.reports
galaxy.workflow.reports.generators
galaxy.workflow.reports.generators.markdown
galaxy.workflow.resources
galaxy.workflow.run
galaxy.workflow.run_request
galaxy.workflow.schedulers
galaxy.workflow.schedulers.core
galaxy.workflow.scheduling_manager
galaxy.workflow.steps
galaxy.workflow.trs_proxy
galaxy_ext
galaxy_ext.container_monitor
galaxy_ext.container_monitor.monitor
galaxy_ext.expressions
galaxy_ext.expressions.handle_job
galaxy_ext.metadata
galaxy_ext.metadata.set_metadata
galaxy_test
galaxy_test.api
galaxy_test.api.cwl
galaxy_test.api.sharable
galaxy_test.api.test_authenticate
galaxy_test.api.test_configuration
galaxy_test.api.test_dataset_collections
galaxy_test.api.test_datasets
galaxy_test.api.test_datatypes
galaxy_test.api.test_display_applications
galaxy_test.api.test_folder_contents
galaxy_test.api.test_folders
galaxy_test.api.test_framework
galaxy_test.api.test_group_roles
galaxy_test.api.test_group_users
galaxy_test.api.test_groups
galaxy_test.api.test_histories
galaxy_test.api.test_history_contents
galaxy_test.api.test_history_contents_provenance
galaxy_test.api.test_jobs
galaxy_test.api.test_libraries
galaxy_test.api.test_licenses
galaxy_test.api.test_page_revisions
galaxy_test.api.test_pages
galaxy_test.api.test_roles
galaxy_test.api.test_search
galaxy_test.api.test_tool_data
galaxy_test.api.test_tools
galaxy_test.api.test_tools_upload
galaxy_test.api.test_tours
galaxy_test.api.test_users
galaxy_test.api.test_visualizations
galaxy_test.api.test_webhooks
galaxy_test.api.test_workflow_extraction
galaxy_test.api.test_workflows
galaxy_test.api.test_workflows_cwl
galaxy_test.api.test_workflows_from_yaml
galaxy_test.base
galaxy_test.base.api
galaxy_test.base.api_asserts
galaxy_test.base.api_util
galaxy_test.base.constants
galaxy_test.base.env
galaxy_test.base.interactor
galaxy_test.base.populators
galaxy_test.base.rules_test_data
galaxy_test.base.testcase
galaxy_test.base.workflow_fixtures
galaxy_test.conftest
galaxy_test.driver
galaxy_test.driver.driver_util
galaxy_test.driver.integration_setup
galaxy_test.driver.integration_util
galaxy_test.driver.test_logging
galaxy_test.driver.testcase
galaxy_test.performance
galaxy_test.performance.test_workflow_framework_performance
galaxy_test.selenium
galaxy_test.selenium.conftest
galaxy_test.selenium.framework
galaxy_test.selenium.jupyter
galaxy_test.selenium.jupyter_context
galaxy_test.selenium.test_admin_app
galaxy_test.selenium.test_anon_history
galaxy_test.selenium.test_change_password
galaxy_test.selenium.test_collection_builders
galaxy_test.selenium.test_collection_edit
galaxy_test.selenium.test_custom_builds
galaxy_test.selenium.test_data_source_tools
galaxy_test.selenium.test_dataset_metadata_download
galaxy_test.selenium.test_histories_list
galaxy_test.selenium.test_history_copy_elements
galaxy_test.selenium.test_history_dataset_state
galaxy_test.selenium.test_history_multi_view
galaxy_test.selenium.test_history_options
galaxy_test.selenium.test_history_panel
galaxy_test.selenium.test_history_panel_collections
galaxy_test.selenium.test_history_sharing
galaxy_test.selenium.test_invocation_grid
galaxy_test.selenium.test_library_contents
galaxy_test.selenium.test_library_landing
galaxy_test.selenium.test_library_to_collections
galaxy_test.selenium.test_login
galaxy_test.selenium.test_navigates_galaxy
galaxy_test.selenium.test_pages
galaxy_test.selenium.test_personal_information
galaxy_test.selenium.test_registration
galaxy_test.selenium.test_sign_out
galaxy_test.selenium.test_sizzle_loading
galaxy_test.selenium.test_stock_tours
galaxy_test.selenium.test_tool_describing_tours
galaxy_test.selenium.test_tool_form
galaxy_test.selenium.test_uploads
galaxy_test.selenium.test_workflow_editor
galaxy_test.selenium.test_workflow_invocation_details
galaxy_test.selenium.test_workflow_management
galaxy_test.selenium.test_workflow_run
galaxy_test.selenium.test_workflow_sharing
tool_shed
tool_shed.dependencies
tool_shed.dependencies.attribute_handlers
tool_shed.dependencies.repository
tool_shed.dependencies.repository.relation_builder
tool_shed.dependencies.tool
tool_shed.dependencies.tool.tag_attribute_handler
tool_shed.galaxy_install
tool_shed.grids
tool_shed.grids.admin_grids
tool_shed.grids.repository_grid_filter_manager
tool_shed.grids.repository_grids
tool_shed.grids.util
tool_shed.managers
tool_shed.managers.groups
tool_shed.managers.repositories
tool_shed.metadata
tool_shed.metadata.metadata_generator
tool_shed.metadata.repository_metadata_manager
tool_shed.repository_registry
tool_shed.repository_types
tool_shed.repository_types.metadata
tool_shed.repository_types.registry
tool_shed.repository_types.repository_suite_definition
tool_shed.repository_types.tool_dependency_definition
tool_shed.repository_types.unrestricted
tool_shed.repository_types.util
tool_shed.test
tool_shed.test.base
tool_shed.test.base.common
tool_shed.test.base.test_db_util
tool_shed.test.base.twilltestcase
tool_shed.test.functional
tool_shed.test.functional.test_0000_basic_repository_features
tool_shed.test.functional.test_0010_repository_with_tool_dependencies
tool_shed.test.functional.test_0020_basic_repository_dependencies
tool_shed.test.functional.test_0030_repository_dependency_revisions
tool_shed.test.functional.test_0040_repository_circular_dependencies
tool_shed.test.functional.test_0050_circular_dependencies_4_levels
tool_shed.test.functional.test_0070_invalid_tool
tool_shed.test.functional.test_0080_advanced_circular_dependencies
tool_shed.test.functional.test_0090_tool_search
tool_shed.test.functional.test_0100_complex_repository_dependencies
tool_shed.test.functional.test_0110_invalid_simple_repository_dependencies
tool_shed.test.functional.test_0120_simple_repository_dependency_multiple_owners
tool_shed.test.functional.test_0140_tool_help_images
tool_shed.test.functional.test_0150_prior_installation_required
tool_shed.test.functional.test_0160_circular_prior_installation_required
tool_shed.test.functional.test_0170_complex_prior_installation_required
tool_shed.test.functional.test_0300_reset_all_metadata
tool_shed.test.functional.test_0310_hg_api_features
tool_shed.test.functional.test_0420_citable_urls_for_repositories
tool_shed.test.functional.test_0430_browse_utilities
tool_shed.test.functional.test_0440_deleting_dependency_definitions
tool_shed.test.functional.test_0460_upload_to_repository
tool_shed.test.functional.test_0470_tool_dependency_repository_type
tool_shed.test.functional.test_0480_tool_dependency_xml_verification
tool_shed.test.functional.test_0530_repository_admin_feature
tool_shed.test.functional.test_0550_metadata_updated_dependencies
tool_shed.test.functional.test_1000_install_basic_repository
tool_shed.test.functional.test_1010_install_repository_with_tool_dependencies
tool_shed.test.functional.test_1020_install_repository_with_repository_dependencies
tool_shed.test.functional.test_1030_install_repository_with_dependency_revisions
tool_shed.test.functional.test_1040_install_repository_basic_circular_dependencies
tool_shed.test.functional.test_1050_circular_dependencies_4_levels
tool_shed.test.functional.test_1070_invalid_tool
tool_shed.test.functional.test_1080_advanced_circular_dependency_installation
tool_shed.test.functional.test_1090_repository_dependency_handling
tool_shed.test.functional.test_1100_install_updated_repository_dependencies
tool_shed.test.functional.test_1120_install_repository_with_complex_dependencies
tool_shed.test.functional.test_1130_install_repository_with_invalid_repository_dependency
tool_shed.test.functional.test_1140_simple_repository_dependency_multiple_owners
tool_shed.test.functional.test_1160_tool_help_images
tool_shed.test.functional.test_1170_prior_installation_required
tool_shed.test.functional.test_1180_circular_prior_installation_required
tool_shed.test.functional.test_1190_complex_prior_installation_required
tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository
tool_shed.test.functional.test_1210_uninstall_reinstall_repository_with_tool_dependencies
tool_shed.test.functional.test_1230_uninstall_reinstall_repository_with_dependency_revisions
tool_shed.test.functional.test_1300_reset_all_metadata
tool_shed.test.functional.test_1410_update_manager
tool_shed.test.functional.test_1430_repair_installed_repository
tool_shed.test.functional.test_1460_data_managers
tool_shed.test.functional.test_1470_updating_installed_repositories
tool_shed.tools
tool_shed.tools.data_table_manager
tool_shed.tools.tool_validator
tool_shed.tools.tool_version_manager
tool_shed.util
tool_shed.util.admin_util
tool_shed.util.basic_util
tool_shed.util.commit_util
tool_shed.util.common_util
tool_shed.util.container_util
tool_shed.util.encoding_util
tool_shed.util.hg_util
tool_shed.util.hgweb_config
tool_shed.util.metadata_util
tool_shed.util.readme_util
tool_shed.util.repository_content_util
tool_shed.util.repository_util
tool_shed.util.search_util
tool_shed.util.shed_index
tool_shed.util.shed_util_common
tool_shed.util.tool_dependency_util
tool_shed.util.tool_util
tool_shed.util.web_util
tool_shed.util.xml_util
tool_shed.utility_containers
tool_shed.utility_containers.utility_container_manager
tool_shed.webapp
tool_shed.webapp.api
tool_shed.webapp.api.authenticate
tool_shed.webapp.api.categories
tool_shed.webapp.api.configuration
tool_shed.webapp.api.groups
tool_shed.webapp.api.repositories
tool_shed.webapp.api.repository_revisions
tool_shed.webapp.api.tools
tool_shed.webapp.api.users
tool_shed.webapp.app
tool_shed.webapp.buildapp
tool_shed.webapp.config
tool_shed.webapp.controllers
tool_shed.webapp.controllers.admin
tool_shed.webapp.controllers.groups
tool_shed.webapp.controllers.hg
tool_shed.webapp.controllers.repository
tool_shed.webapp.controllers.upload
tool_shed.webapp.controllers.user
tool_shed.webapp.fast_app
tool_shed.webapp.fast_factory
tool_shed.webapp.framework
tool_shed.webapp.framework.decorators
tool_shed.webapp.framework.middleware
tool_shed.webapp.framework.middleware.remoteuser
tool_shed.webapp.model
tool_shed.webapp.model.mapping
tool_shed.webapp.search
tool_shed.webapp.search.repo_search
tool_shed.webapp.search.tool_search
tool_shed.webapp.security
tool_shed.webapp.util
tool_shed.webapp.util.ratings_util
tool_shed.webapp.util.shed_statistics