from ..base import common
from ..base.twilltestcase import ShedTwillTestCase
[docs]class TestUninstallingAndReinstallingRepositories(ShedTwillTestCase):
"""Test uninstalling and reinstalling a basic repository."""
requires_galaxy = True
[docs] def test_0000_initiate_users(self):
"""Create necessary user accounts."""
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_ensure_repositories_and_categories_exist(self):
"""Create the 0000 category and upload the filtering repository to the tool shed, if necessary."""
category = self.create_category(
name="Test 0000 Basic Repository Features 1", description="Test 0000 Basic Repository Features 1"
)
self.create_category(
name="Test 0000 Basic Repository Features 2", description="Test 0000 Basic Repository Features 2"
)
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
repository = self.get_or_create_repository(
name="filtering_0000",
description="Galaxy's filtering tool for test 0000",
long_description="Long description of Galaxy's filtering tool for test 0000",
owner=common.test_user_1_name,
category=category,
)
if self.repository_is_new(repository):
self.commit_tar_to_repository(
repository,
"filtering/filtering_1.1.0.tar",
commit_message="Uploaded filtering 1.1.0 tarball.",
)
self.add_file_to_repository(repository, "filtering/filtering_0000.txt")
self.add_tar_to_repository(repository, "filtering/filtering_2.2.0.tar")
self.add_file_to_repository(repository, "readme.txt")
[docs] def test_0010_install_filtering_repository(self):
"""Install the filtering repository into the Galaxy instance."""
self._install_repository(
"filtering_0000",
common.test_user_1_name,
"Test 0000 Basic Repository Features 1",
new_tool_panel_section_label="test_1000",
)
self._assert_has_installed_repos_with_names("filtering_0000")
[docs] def test_0015_uninstall_filtering_repository(self):
"""Uninstall the filtering repository."""
installed_repository = self._get_installed_repository_by_name_owner("filtering_0000", common.test_user_1_name)
self._uninstall_repository(installed_repository)
self._assert_has_no_installed_repos_with_names("filtering_0000")
[docs] def test_0020_reinstall_filtering_repository(self):
"""Reinstall the filtering repository."""
installed_repository = self._get_installed_repository_by_name_owner("filtering_0000", common.test_user_1_name)
self.reinstall_repository_api(installed_repository)
self._assert_has_installed_repos_with_names("filtering_0000")
self._assert_has_valid_tool_with_name("Filter1")
self._assert_repo_has_tool_with_id(installed_repository, "Filter1")
[docs] def test_0025_deactivate_filtering_repository(self):
"""Deactivate the filtering repository without removing it from disk."""
installed_repository = self._get_installed_repository_by_name_owner("filtering_0000", common.test_user_1_name)
self.deactivate_repository(installed_repository)
self._assert_has_no_installed_repos_with_names("filtering_0000")
[docs] def test_0030_reactivate_filtering_repository(self):
"""Reactivate the filtering repository and verify that it now shows up in the list of installed repositories."""
installed_repository = self._get_installed_repository_by_name_owner("filtering_0000", common.test_user_1_name)
self.reactivate_repository(installed_repository)
self._assert_has_installed_repos_with_names("filtering_0000")
self._assert_has_valid_tool_with_name("Filter1")
self._assert_repo_has_tool_with_id(installed_repository, "Filter1")