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Source code for tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository
from ..base.twilltestcase import common, ShedTwillTestCase
[docs]class UninstallingAndReinstallingRepositories(ShedTwillTestCase):
'''Test uninstalling and reinstalling a basic repository.'''
[docs] def test_0000_initiate_users(self):
"""Create necessary user accounts."""
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
test_user_1 = self.test_db_util.get_user(common.test_user_1_email)
assert test_user_1 is not None, 'Problem retrieving user with email %s from the database' % common.test_user_1_email
self.test_db_util.get_private_role(test_user_1)
self.login(email=common.admin_email, username=common.admin_username)
admin_user = self.test_db_util.get_user(common.admin_email)
assert admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email
self.test_db_util.get_private_role(admin_user)
self.galaxy_login(email=common.admin_email, username=common.admin_username)
galaxy_admin_user = self.test_db_util.get_galaxy_user(common.admin_email)
assert galaxy_admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email
self.test_db_util.get_galaxy_private_role(galaxy_admin_user)
[docs] def test_0005_ensure_repositories_and_categories_exist(self):
'''Create the 0000 category and upload the filtering repository to the tool shed, if necessary.'''
category = self.create_category(name='Test 0000 Basic Repository Features 1', description='Test 0000 Basic Repository Features 1')
self.create_category(name='Test 0000 Basic Repository Features 2', description='Test 0000 Basic Repository Features 2')
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
repository = self.get_or_create_repository(name='filtering_0000',
description="Galaxy's filtering tool for test 0000",
long_description="Long description of Galaxy's filtering tool for test 0000",
owner=common.test_user_1_name,
category_id=self.security.encode_id(category.id))
if self.repository_is_new(repository):
self.upload_file(repository,
filename='filtering/filtering_1.1.0.tar',
filepath=None,
valid_tools_only=True,
uncompress_file=True,
remove_repo_files_not_in_tar=False,
commit_message='Uploaded filtering 1.1.0 tarball.',
strings_displayed=[],
strings_not_displayed=[])
self.upload_file(repository,
filename='filtering/filtering_0000.txt',
filepath=None,
valid_tools_only=True,
uncompress_file=False,
remove_repo_files_not_in_tar=False,
commit_message='Uploaded readme for 1.1.0',
strings_displayed=[],
strings_not_displayed=[])
self.upload_file(repository,
filename='filtering/filtering_2.2.0.tar',
filepath=None,
valid_tools_only=True,
uncompress_file=True,
remove_repo_files_not_in_tar=False,
commit_message='Uploaded filtering 2.2.0 tarball.',
strings_displayed=[],
strings_not_displayed=[])
self.upload_file(repository,
filename='readme.txt',
filepath=None,
valid_tools_only=True,
uncompress_file=False,
remove_repo_files_not_in_tar=False,
commit_message='Uploaded readme for 2.2.0',
strings_displayed=[],
strings_not_displayed=[])
[docs] def test_0010_install_filtering_repository(self):
'''Install the filtering repository into the Galaxy instance.'''
self.galaxy_login(email=common.admin_email, username=common.admin_username)
self.install_repository('filtering_0000',
common.test_user_1_name,
'Test 0000 Basic Repository Features 1',
new_tool_panel_section_label='test_1000')
installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name)
strings_displayed = ['filtering_0000',
"Galaxy's filtering tool for test 0000",
'user1',
self.url.replace('http://', ''),
installed_repository.installed_changeset_revision]
self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
[docs] def test_0015_uninstall_filtering_repository(self):
'''Uninstall the filtering repository.'''
installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name)
self.uninstall_repository(installed_repository)
strings_not_displayed = ['filtering_0000',
"Galaxy's filtering tool for test 0000",
installed_repository.installed_changeset_revision]
self.display_galaxy_browse_repositories_page(strings_not_displayed=strings_not_displayed)
[docs] def test_0020_reinstall_filtering_repository(self):
'''Reinstall the filtering repository.'''
installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name)
self.reinstall_repository(installed_repository)
strings_displayed = ['filtering_0000',
"Galaxy's filtering tool for test 0000",
'user1',
self.url.replace('http://', ''),
str(installed_repository.installed_changeset_revision)]
self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
strings_displayed.extend(['Installed tool shed repository', 'Valid tools', 'Filter1'])
self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed)
self.verify_tool_metadata_for_installed_repository(installed_repository)
[docs] def test_0025_deactivate_filtering_repository(self):
'''Deactivate the filtering repository without removing it from disk.'''
installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name)
self.deactivate_repository(installed_repository)
strings_not_displayed = ['filtering_0000',
"Galaxy's filtering tool for test 0000",
installed_repository.installed_changeset_revision]
self.display_galaxy_browse_repositories_page(strings_not_displayed=strings_not_displayed)
[docs] def test_0030_reactivate_filtering_repository(self):
'''Reactivate the filtering repository and verify that it now shows up in the list of installed repositories.'''
installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name)
self.reactivate_repository(installed_repository)
strings_displayed = ['filtering_0000',
"Galaxy's filtering tool for test 0000",
'user1',
self.url.replace('http://', ''),
str(installed_repository.installed_changeset_revision)]
self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
strings_displayed.extend(['Installed tool shed repository', 'Valid tools', 'Filter1'])
self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed)
self.verify_tool_metadata_for_installed_repository(installed_repository)