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Source code for tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository

from ..base.twilltestcase import (
    common,
    ShedTwillTestCase,
)


[docs]class UninstallingAndReinstallingRepositories(ShedTwillTestCase): """Test uninstalling and reinstalling a basic repository."""
[docs] def test_0000_initiate_users(self): """Create necessary user accounts.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) self.login(email=common.admin_email, username=common.admin_username) self.galaxy_login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_ensure_repositories_and_categories_exist(self): """Create the 0000 category and upload the filtering repository to the tool shed, if necessary.""" category = self.create_category( name="Test 0000 Basic Repository Features 1", description="Test 0000 Basic Repository Features 1" ) self.create_category( name="Test 0000 Basic Repository Features 2", description="Test 0000 Basic Repository Features 2" ) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name="filtering_0000", description="Galaxy's filtering tool for test 0000", long_description="Long description of Galaxy's filtering tool for test 0000", owner=common.test_user_1_name, category=category, ) if self.repository_is_new(repository): self.upload_file( repository, filename="filtering/filtering_1.1.0.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded filtering 1.1.0 tarball.", strings_displayed=[], strings_not_displayed=[], ) self.upload_file( repository, filename="filtering/filtering_0000.txt", filepath=None, valid_tools_only=True, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message="Uploaded readme for 1.1.0", strings_displayed=[], strings_not_displayed=[], ) self.upload_file( repository, filename="filtering/filtering_2.2.0.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded filtering 2.2.0 tarball.", strings_displayed=[], strings_not_displayed=[], ) self.upload_file( repository, filename="readme.txt", filepath=None, valid_tools_only=True, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message="Uploaded readme for 2.2.0", strings_displayed=[], strings_not_displayed=[], )
[docs] def test_0010_install_filtering_repository(self): """Install the filtering repository into the Galaxy instance.""" self.galaxy_login(email=common.admin_email, username=common.admin_username) self.install_repository( "filtering_0000", common.test_user_1_name, "Test 0000 Basic Repository Features 1", new_tool_panel_section_label="test_1000", ) installed_repository = self.test_db_util.get_installed_repository_by_name_owner( "filtering_0000", common.test_user_1_name ) strings_displayed = [ "filtering_0000", "Galaxy's filtering tool for test 0000", "user1", self.url.replace("http://", ""), installed_repository.installed_changeset_revision, ] self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
[docs] def test_0015_uninstall_filtering_repository(self): """Uninstall the filtering repository.""" installed_repository = self.test_db_util.get_installed_repository_by_name_owner( "filtering_0000", common.test_user_1_name ) self.uninstall_repository(installed_repository) strings_not_displayed = [ "filtering_0000", "Galaxy's filtering tool for test 0000", installed_repository.installed_changeset_revision, ] self.display_galaxy_browse_repositories_page(strings_not_displayed=strings_not_displayed)
[docs] def test_0020_reinstall_filtering_repository(self): """Reinstall the filtering repository.""" installed_repository = self.test_db_util.get_installed_repository_by_name_owner( "filtering_0000", common.test_user_1_name ) self.reinstall_repository(installed_repository) strings_displayed = [ "filtering_0000", "Galaxy's filtering tool for test 0000", "user1", self.url.replace("http://", ""), str(installed_repository.installed_changeset_revision), ] self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed) strings_displayed.extend(["Installed tool shed repository", "Valid tools", "Filter1"]) self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed) self.verify_tool_metadata_for_installed_repository(installed_repository)
[docs] def test_0025_deactivate_filtering_repository(self): """Deactivate the filtering repository without removing it from disk.""" installed_repository = self.test_db_util.get_installed_repository_by_name_owner( "filtering_0000", common.test_user_1_name ) self.deactivate_repository(installed_repository) strings_not_displayed = [ "filtering_0000", "Galaxy's filtering tool for test 0000", installed_repository.installed_changeset_revision, ] self.display_galaxy_browse_repositories_page(strings_not_displayed=strings_not_displayed)
[docs] def test_0030_reactivate_filtering_repository(self): """Reactivate the filtering repository and verify that it now shows up in the list of installed repositories.""" installed_repository = self.test_db_util.get_installed_repository_by_name_owner( "filtering_0000", common.test_user_1_name ) self.reactivate_repository(installed_repository) strings_displayed = [ "filtering_0000", "Galaxy's filtering tool for test 0000", "user1", self.url.replace("http://", ""), str(installed_repository.installed_changeset_revision), ] self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed) strings_displayed.extend(["Installed tool shed repository", "Valid tools", "Filter1"]) self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed) self.verify_tool_metadata_for_installed_repository(installed_repository)