Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for tool_shed.test.functional.test_1200_uninstall_and_reinstall_basic_repository

from ..base.twilltestcase import common, ShedTwillTestCase


[docs]class UninstallingAndReinstallingRepositories(ShedTwillTestCase): '''Test uninstalling and reinstalling a basic repository.'''
[docs] def test_0000_initiate_users(self): """Create necessary user accounts.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) test_user_1 = self.test_db_util.get_user(common.test_user_1_email) assert test_user_1 is not None, 'Problem retrieving user with email %s from the database' % common.test_user_1_email self.test_db_util.get_private_role(test_user_1) self.login(email=common.admin_email, username=common.admin_username) admin_user = self.test_db_util.get_user(common.admin_email) assert admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email self.test_db_util.get_private_role(admin_user) self.galaxy_login(email=common.admin_email, username=common.admin_username) galaxy_admin_user = self.test_db_util.get_galaxy_user(common.admin_email) assert galaxy_admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email self.test_db_util.get_galaxy_private_role(galaxy_admin_user)
[docs] def test_0005_ensure_repositories_and_categories_exist(self): '''Create the 0000 category and upload the filtering repository to the tool shed, if necessary.''' category = self.create_category(name='Test 0000 Basic Repository Features 1', description='Test 0000 Basic Repository Features 1') self.create_category(name='Test 0000 Basic Repository Features 2', description='Test 0000 Basic Repository Features 2') self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository(name='filtering_0000', description="Galaxy's filtering tool for test 0000", long_description="Long description of Galaxy's filtering tool for test 0000", owner=common.test_user_1_name, category_id=self.security.encode_id(category.id)) if self.repository_is_new(repository): self.upload_file(repository, filename='filtering/filtering_1.1.0.tar', filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message='Uploaded filtering 1.1.0 tarball.', strings_displayed=[], strings_not_displayed=[]) self.upload_file(repository, filename='filtering/filtering_0000.txt', filepath=None, valid_tools_only=True, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message='Uploaded readme for 1.1.0', strings_displayed=[], strings_not_displayed=[]) self.upload_file(repository, filename='filtering/filtering_2.2.0.tar', filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message='Uploaded filtering 2.2.0 tarball.', strings_displayed=[], strings_not_displayed=[]) self.upload_file(repository, filename='readme.txt', filepath=None, valid_tools_only=True, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message='Uploaded readme for 2.2.0', strings_displayed=[], strings_not_displayed=[])
[docs] def test_0010_install_filtering_repository(self): '''Install the filtering repository into the Galaxy instance.''' self.galaxy_login(email=common.admin_email, username=common.admin_username) self.install_repository('filtering_0000', common.test_user_1_name, 'Test 0000 Basic Repository Features 1', new_tool_panel_section_label='test_1000') installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name) strings_displayed = ['filtering_0000', "Galaxy's filtering tool for test 0000", 'user1', self.url.replace('http://', ''), installed_repository.installed_changeset_revision] self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
[docs] def test_0015_uninstall_filtering_repository(self): '''Uninstall the filtering repository.''' installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name) self.uninstall_repository(installed_repository) strings_not_displayed = ['filtering_0000', "Galaxy's filtering tool for test 0000", installed_repository.installed_changeset_revision] self.display_galaxy_browse_repositories_page(strings_not_displayed=strings_not_displayed)
[docs] def test_0020_reinstall_filtering_repository(self): '''Reinstall the filtering repository.''' installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name) self.reinstall_repository(installed_repository) strings_displayed = ['filtering_0000', "Galaxy's filtering tool for test 0000", 'user1', self.url.replace('http://', ''), str(installed_repository.installed_changeset_revision)] self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed) strings_displayed.extend(['Installed tool shed repository', 'Valid tools', 'Filter1']) self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed) self.verify_tool_metadata_for_installed_repository(installed_repository)
[docs] def test_0025_deactivate_filtering_repository(self): '''Deactivate the filtering repository without removing it from disk.''' installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name) self.deactivate_repository(installed_repository) strings_not_displayed = ['filtering_0000', "Galaxy's filtering tool for test 0000", installed_repository.installed_changeset_revision] self.display_galaxy_browse_repositories_page(strings_not_displayed=strings_not_displayed)
[docs] def test_0030_reactivate_filtering_repository(self): '''Reactivate the filtering repository and verify that it now shows up in the list of installed repositories.''' installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_0000', common.test_user_1_name) self.reactivate_repository(installed_repository) strings_displayed = ['filtering_0000', "Galaxy's filtering tool for test 0000", 'user1', self.url.replace('http://', ''), str(installed_repository.installed_changeset_revision)] self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed) strings_displayed.extend(['Installed tool shed repository', 'Valid tools', 'Filter1']) self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed) self.verify_tool_metadata_for_installed_repository(installed_repository)