from ..base import common
from ..base.twilltestcase import ShedTwillTestCase
repository_name = "bismark_0070"
repository_description = "Galaxy's bismark wrapper"
repository_long_description = "Long description of Galaxy's bismark wrapper"
category_name = "Test 0070 Invalid Tool Revisions"
category_description = "Tests for a repository with invalid tool revisions."
[docs]class TestBismarkRepository(ShedTwillTestCase):
"""Testing bismark with valid and invalid tool entries."""
[docs] def test_0000_create_or_login_admin_user(self):
"""Create necessary user accounts and login as an admin user."""
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_create_category_and_repository(self):
"""Create a category for this test suite, then create and populate a bismark repository. It should contain at least one each valid and invalid tool."""
category = self.create_category(name=category_name, description=category_description)
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
repository = self.get_or_create_repository(
name=repository_name,
description=repository_description,
long_description=repository_long_description,
owner=common.test_user_1_name,
category=category,
strings_displayed=[],
)
self.user_populator().setup_bismark_repo(repository)
invalid_revision = self.get_repository_first_revision(repository)
self.display_manage_repository_page(repository, strings_displayed=[self.invalid_tools_labels])
valid_revision = self.get_repository_tip(repository)
tool_guid = f"{self.url.replace('http://', '').rstrip('/')}/repos/user1/bismark_0070/bismark_methylation_extractor/0.7.7.3"
tool_metadata_strings_displayed = [
tool_guid,
"0.7.7.3", # The tool version.
"bismark_methylation_extractor", # The tool ID.
"Bismark", # The tool name.
"methylation extractor",
] # The tool description.
tool_page_strings_displayed = ["Bismark (version 0.7.7.3)"]
self.check_repository_tools_for_changeset_revision(
repository,
valid_revision,
tool_metadata_strings_displayed=tool_metadata_strings_displayed,
tool_page_strings_displayed=tool_page_strings_displayed,
)
self.check_repository_invalid_tools_for_changeset_revision(repository, invalid_revision)