Source code for tool_shed.test.functional.test_0070_invalid_tool

from ..base.twilltestcase import (
    common,
    ShedTwillTestCase,
)

repository_name = "bismark_0070"
repository_description = "Galaxy's bismark wrapper"
repository_long_description = "Long description of Galaxy's bismark wrapper"
category_name = "Test 0070 Invalid Tool Revisions"
category_description = "Tests for a repository with invalid tool revisions."


[docs]class TestBismarkRepository(ShedTwillTestCase): """Testing bismark with valid and invalid tool entries."""
[docs] def test_0000_create_or_login_admin_user(self): """Create necessary user accounts and login as an admin user.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) test_user_1 = self.test_db_util.get_user(common.test_user_1_email) assert ( test_user_1 is not None ), f"Problem retrieving user with email {common.test_user_1_email} from the database" self.test_db_util.get_private_role(test_user_1) self.login(email=common.admin_email, username=common.admin_username) admin_user = self.test_db_util.get_user(common.admin_email) assert admin_user is not None, f"Problem retrieving user with email {common.admin_email} from the database" self.test_db_util.get_private_role(admin_user)
[docs] def test_0005_create_category_and_repository(self): """Create a category for this test suite, then create and populate a bismark repository. It should contain at least one each valid and invalid tool.""" category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=repository_name, description=repository_description, long_description=repository_long_description, owner=common.test_user_1_name, category_id=self.security.encode_id(category.id), strings_displayed=[], ) self.upload_file( repository, filename="bismark/bismark.tar", filepath=None, valid_tools_only=False, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded bismark tarball.", strings_displayed=[], strings_not_displayed=[], ) self.display_manage_repository_page(repository, strings_displayed=["Invalid tools"]) invalid_revision = self.get_repository_tip(repository) self.upload_file( repository, filename="bismark/bismark_methylation_extractor.xml", filepath=None, valid_tools_only=False, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message="Uploaded an updated tool xml.", strings_displayed=[], strings_not_displayed=[], ) valid_revision = self.get_repository_tip(repository) self.test_db_util.refresh(repository) tool_guid = f"{self.url.replace('http://', '').rstrip('/')}/repos/user1/bismark_0070/bismark_methylation_extractor/0.7.7.3" tool_metadata_strings_displayed = [ tool_guid, "0.7.7.3", # The tool version. "bismark_methylation_extractor", # The tool ID. "Bismark", # The tool name. "methylation extractor", ] # The tool description. tool_page_strings_displayed = ["Bismark (version 0.7.7.3)"] self.check_repository_tools_for_changeset_revision( repository, valid_revision, tool_metadata_strings_displayed=tool_metadata_strings_displayed, tool_page_strings_displayed=tool_page_strings_displayed, ) self.check_repository_invalid_tools_for_changeset_revision(repository, invalid_revision)