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Source code for tool_shed.test.functional.test_0070_invalid_tool

from ..base.twilltestcase import common, ShedTwillTestCase

repository_name = 'bismark_0070'
repository_description = "Galaxy's bismark wrapper"
repository_long_description = "Long description of Galaxy's bismark wrapper"
category_name = 'Test 0070 Invalid Tool Revisions'
category_description = 'Tests for a repository with invalid tool revisions.'


[docs]class TestBismarkRepository(ShedTwillTestCase): '''Testing bismark with valid and invalid tool entries.'''
[docs] def test_0000_create_or_login_admin_user(self): """Create necessary user accounts and login as an admin user.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) test_user_1 = self.test_db_util.get_user(common.test_user_1_email) assert test_user_1 is not None, 'Problem retrieving user with email %s from the database' % common.test_user_1_email self.test_db_util.get_private_role(test_user_1) self.login(email=common.admin_email, username=common.admin_username) admin_user = self.test_db_util.get_user(common.admin_email) assert admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email self.test_db_util.get_private_role(admin_user)
[docs] def test_0005_create_category_and_repository(self): """Create a category for this test suite, then create and populate a bismark repository. It should contain at least one each valid and invalid tool.""" category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository(name=repository_name, description=repository_description, long_description=repository_long_description, owner=common.test_user_1_name, category_id=self.security.encode_id(category.id), strings_displayed=[]) self.upload_file(repository, filename='bismark/bismark.tar', filepath=None, valid_tools_only=False, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message='Uploaded bismark tarball.', strings_displayed=[], strings_not_displayed=[]) self.display_manage_repository_page(repository, strings_displayed=['Invalid tools']) invalid_revision = self.get_repository_tip(repository) self.upload_file(repository, filename='bismark/bismark_methylation_extractor.xml', filepath=None, valid_tools_only=False, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message='Uploaded an updated tool xml.', strings_displayed=[], strings_not_displayed=[]) valid_revision = self.get_repository_tip(repository) self.test_db_util.refresh(repository) tool_guid = '%s/repos/user1/bismark_0070/bismark_methylation_extractor/0.7.7.3' % self.url.replace('http://', '').rstrip('/') tool_metadata_strings_displayed = [tool_guid, '0.7.7.3', # The tool version. 'bismark_methylation_extractor', # The tool ID. 'Bismark', # The tool name. 'methylation extractor'] # The tool description. tool_page_strings_displayed = ['Bismark (version 0.7.7.3)'] self.check_repository_tools_for_changeset_revision(repository, valid_revision, tool_metadata_strings_displayed=tool_metadata_strings_displayed, tool_page_strings_displayed=tool_page_strings_displayed) self.check_repository_invalid_tools_for_changeset_revision(repository, invalid_revision)