Source code for tool_shed.test.functional.test_1080_advanced_circular_dependency_installation

import logging

from ..base import common
from ..base.twilltestcase import ShedTwillTestCase

column_repository_name = "column_maker_0080"
column_repository_description = "Add column"
column_repository_long_description = "Compute an expression on every row"

convert_repository_name = "convert_chars_0080"
convert_repository_description = "Convert delimiters"
convert_repository_long_description = "Convert delimiters to tab"

category_name = "Test 0080 Advanced Circular Dependencies"
category_description = "Test circular dependency features"

log = logging.getLogger(__name__)

running_standalone = False


[docs]class TestRepositoryDependencies(ShedTwillTestCase): """Testing uninstalling and reinstalling repository dependencies, and setting tool panel sections.""" requires_galaxy = True
[docs] def test_0000_create_or_login_admin_user(self): """Create necessary user accounts and login as an admin user.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_create_and_populate_column_repository(self): """Create the category for this test suite, then create and populate column_maker.""" category = self.create_category(name=category_name, description=category_description) global running_standalone self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=column_repository_name, description=column_repository_description, long_description=column_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) if self.repository_is_new(repository): self.commit_tar_to_repository( repository, "column_maker/column_maker.tar", commit_message="Uploaded column_maker tarball.", ) running_standalone = True
[docs] def test_0010_create_and_populate_convert_repository(self): """Create and populate the convert_chars repository.""" global running_standalone self.login(email=common.admin_email, username=common.admin_username) category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=convert_repository_name, description=convert_repository_description, long_description=convert_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) if self.repository_is_new(repository): self.commit_tar_to_repository( repository, "convert_chars/convert_chars.tar", commit_message="Uploaded convert_chars tarball.", ) running_standalone = True
[docs] def test_0015_upload_dependency_xml_if_needed(self): """If this test is being run by itself, it will not have repository dependencies configured yet.""" global running_standalone if running_standalone: convert_repository = self._get_repository_by_name_and_owner( convert_repository_name, common.test_user_1_name ) column_repository = self._get_repository_by_name_and_owner(column_repository_name, common.test_user_1_name) repository_dependencies_path = self.generate_temp_path("test_1080", additional_paths=["convert"]) repository_tuple = ( self.url, convert_repository.name, convert_repository.owner, self.get_repository_tip(convert_repository), ) self.create_repository_dependency( repository=column_repository, repository_tuples=[repository_tuple], filepath=repository_dependencies_path, ) repository_tuple = ( self.url, column_repository.name, column_repository.owner, self.get_repository_tip(column_repository), ) self.create_repository_dependency( repository=convert_repository, repository_tuples=[repository_tuple], filepath=repository_dependencies_path, )
[docs] def test_0020_install_convert_repository(self): """Install convert_chars without repository dependencies into convert_chars tool panel section.""" self._install_repository( convert_repository_name, common.test_user_1_name, category_name, install_tool_dependencies=False, install_repository_dependencies=False, new_tool_panel_section_label="convert_chars", ) installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) assert self._get_installed_repository_for( common.test_user_1, convert_repository_name, installed_convert_repository.installed_changeset_revision ) if self.full_stack_galaxy: # This branch has been broken since we switched from mako to API for installing... self._assert_has_installed_repository_dependency( installed_convert_repository, column_repository_name, installed_column_repository.installed_changeset_revision, ) else: # Previous mako had some string checks and such equivalent to this. self._assert_has_missing_dependency(installed_convert_repository, column_repository_name)
[docs] def test_0025_install_column_repository(self): """Install column maker with repository dependencies into column_maker tool panel section.""" self._install_repository( column_repository_name, common.test_user_1_name, category_name, install_repository_dependencies=True, new_tool_panel_section_label="column_maker", ) installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) assert self._get_installed_repository_for( common.test_user_1, "convert_chars_0080", installed_convert_repository.installed_changeset_revision ) assert self._get_installed_repository_for( common.test_user_1, "column_maker_0080", installed_column_repository.installed_changeset_revision ) self._assert_has_installed_repository_dependency( installed_column_repository, "convert_chars_0080", installed_convert_repository.installed_changeset_revision )
[docs] def test_0030_deactivate_convert_repository(self): """Deactivate convert_chars, verify that column_maker is installed and missing repository dependencies.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.deactivate_repository(installed_convert_repository) self._assert_has_missing_dependency(installed_column_repository, "convert_chars_0080")
[docs] def test_0035_reactivate_convert_repository(self): """Reactivate convert_chars, both convert_chars and column_maker should now show as installed.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.reactivate_repository(installed_convert_repository) self._assert_has_installed_repository_dependency( installed_column_repository, "convert_chars_0080", installed_convert_repository.installed_changeset_revision )
[docs] def test_0040_deactivate_column_repository(self): """Deactivate column_maker, verify that convert_chars is installed and missing repository dependencies.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.deactivate_repository(installed_column_repository) self._assert_has_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0045_deactivate_convert_repository(self): """Deactivate convert_chars, verify that both convert_chars and column_maker are deactivated.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) self.deactivate_repository(installed_convert_repository) self._assert_has_no_installed_repos_with_names("column_maker_0080", "convert_chars_0080")
[docs] def test_0050_reactivate_column_repository(self): """Reactivate column_maker. This should not automatically reactivate convert_chars, so column_maker should be displayed as installed but missing repository dependencies.""" installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.reactivate_repository(installed_column_repository) self._assert_has_missing_dependency(installed_column_repository, "convert_chars_0080")
[docs] def test_0055_reactivate_convert_repository(self): """Activate convert_chars. Both convert_chars and column_maker should now show as installed.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.reactivate_repository(installed_convert_repository) self._assert_has_installed_repos_with_names("column_maker_0080", "convert_chars_0080") self._assert_is_not_missing_dependency(installed_column_repository, "convert_chars_0080") self._assert_is_not_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0060_uninstall_column_repository(self): """Uninstall column_maker. Verify that convert_chars is installed and missing repository dependencies.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self._uninstall_repository(installed_column_repository) self._assert_has_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0065_reinstall_column_repository(self): """Reinstall column_maker without repository dependencies, verify both convert_chars and column_maker are installed.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.reinstall_repository_api(installed_column_repository, install_repository_dependencies=False) self._assert_has_installed_repos_with_names("column_maker_0080", "convert_chars_0080") self._assert_is_not_missing_dependency(installed_column_repository, "convert_chars_0080") self._assert_is_not_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0070_uninstall_convert_repository(self): """Uninstall convert_chars, verify column_maker installed but missing repository dependencies.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.deactivate_repository(installed_convert_repository) self._assert_has_missing_dependency(installed_column_repository, "convert_chars_0080")
[docs] def test_0075_uninstall_column_repository(self): """Uninstall column_maker, verify that both convert_chars and column_maker are uninstalled.""" installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.deactivate_repository(installed_column_repository) self._assert_has_no_installed_repos_with_names("column_maker_0080", "convert_chars_0080")
[docs] def test_0080_reinstall_convert_repository(self): """Reinstall convert_chars with repository dependencies, verify that this installs both convert_chars and column_maker.""" installed_convert_repository = self._get_installed_repository_by_name_owner( convert_repository_name, common.test_user_1_name ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self.reinstall_repository_api(installed_convert_repository, install_repository_dependencies=True) self._assert_has_installed_repos_with_names("column_maker_0080", "convert_chars_0080") self._assert_is_not_missing_dependency(installed_column_repository, "convert_chars_0080") self._assert_is_not_missing_dependency(installed_convert_repository, "column_maker_0080")