import logging
from ..base import common
from ..base.twilltestcase import ShedTwillTestCase
column_repository_name = "column_maker_0080"
column_repository_description = "Add column"
column_repository_long_description = "Compute an expression on every row"
convert_repository_name = "convert_chars_0080"
convert_repository_description = "Convert delimiters"
convert_repository_long_description = "Convert delimiters to tab"
category_name = "Test 0080 Advanced Circular Dependencies"
category_description = "Test circular dependency features"
log = logging.getLogger(__name__)
running_standalone = False
[docs]class TestRepositoryDependencies(ShedTwillTestCase):
"""Testing uninstalling and reinstalling repository dependencies, and setting tool panel sections."""
requires_galaxy = True
[docs] def test_0000_create_or_login_admin_user(self):
"""Create necessary user accounts and login as an admin user."""
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_create_and_populate_column_repository(self):
"""Create the category for this test suite, then create and populate column_maker."""
category = self.create_category(name=category_name, description=category_description)
global running_standalone
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
repository = self.get_or_create_repository(
name=column_repository_name,
description=column_repository_description,
long_description=column_repository_long_description,
owner=common.test_user_1_name,
category=category,
strings_displayed=[],
)
if self.repository_is_new(repository):
self.commit_tar_to_repository(
repository,
"column_maker/column_maker.tar",
commit_message="Uploaded column_maker tarball.",
)
running_standalone = True
[docs] def test_0010_create_and_populate_convert_repository(self):
"""Create and populate the convert_chars repository."""
global running_standalone
self.login(email=common.admin_email, username=common.admin_username)
category = self.create_category(name=category_name, description=category_description)
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
repository = self.get_or_create_repository(
name=convert_repository_name,
description=convert_repository_description,
long_description=convert_repository_long_description,
owner=common.test_user_1_name,
category=category,
strings_displayed=[],
)
if self.repository_is_new(repository):
self.commit_tar_to_repository(
repository,
"convert_chars/convert_chars.tar",
commit_message="Uploaded convert_chars tarball.",
)
running_standalone = True
[docs] def test_0015_upload_dependency_xml_if_needed(self):
"""If this test is being run by itself, it will not have repository dependencies configured yet."""
global running_standalone
if running_standalone:
convert_repository = self._get_repository_by_name_and_owner(
convert_repository_name, common.test_user_1_name
)
column_repository = self._get_repository_by_name_and_owner(column_repository_name, common.test_user_1_name)
repository_dependencies_path = self.generate_temp_path("test_1080", additional_paths=["convert"])
repository_tuple = (
self.url,
convert_repository.name,
convert_repository.owner,
self.get_repository_tip(convert_repository),
)
self.create_repository_dependency(
repository=column_repository,
repository_tuples=[repository_tuple],
filepath=repository_dependencies_path,
)
repository_tuple = (
self.url,
column_repository.name,
column_repository.owner,
self.get_repository_tip(column_repository),
)
self.create_repository_dependency(
repository=convert_repository,
repository_tuples=[repository_tuple],
filepath=repository_dependencies_path,
)
[docs] def test_0020_install_convert_repository(self):
"""Install convert_chars without repository dependencies into convert_chars tool panel section."""
self._install_repository(
convert_repository_name,
common.test_user_1_name,
category_name,
install_tool_dependencies=False,
install_repository_dependencies=False,
new_tool_panel_section_label="convert_chars",
)
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
assert self._get_installed_repository_for(
common.test_user_1, convert_repository_name, installed_convert_repository.installed_changeset_revision
)
if self.full_stack_galaxy:
# This branch has been broken since we switched from mako to API for installing...
self._assert_has_installed_repository_dependency(
installed_convert_repository,
column_repository_name,
installed_column_repository.installed_changeset_revision,
)
else:
# Previous mako had some string checks and such equivalent to this.
self._assert_has_missing_dependency(installed_convert_repository, column_repository_name)
[docs] def test_0025_install_column_repository(self):
"""Install column maker with repository dependencies into column_maker tool panel section."""
self._install_repository(
column_repository_name,
common.test_user_1_name,
category_name,
install_repository_dependencies=True,
new_tool_panel_section_label="column_maker",
)
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
assert self._get_installed_repository_for(
common.test_user_1, "convert_chars_0080", installed_convert_repository.installed_changeset_revision
)
assert self._get_installed_repository_for(
common.test_user_1, "column_maker_0080", installed_column_repository.installed_changeset_revision
)
self._assert_has_installed_repository_dependency(
installed_column_repository, "convert_chars_0080", installed_convert_repository.installed_changeset_revision
)
[docs] def test_0030_deactivate_convert_repository(self):
"""Deactivate convert_chars, verify that column_maker is installed and missing repository dependencies."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.deactivate_repository(installed_convert_repository)
self._assert_has_missing_dependency(installed_column_repository, "convert_chars_0080")
[docs] def test_0035_reactivate_convert_repository(self):
"""Reactivate convert_chars, both convert_chars and column_maker should now show as installed."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.reactivate_repository(installed_convert_repository)
self._assert_has_installed_repository_dependency(
installed_column_repository, "convert_chars_0080", installed_convert_repository.installed_changeset_revision
)
[docs] def test_0040_deactivate_column_repository(self):
"""Deactivate column_maker, verify that convert_chars is installed and missing repository dependencies."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.deactivate_repository(installed_column_repository)
self._assert_has_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0045_deactivate_convert_repository(self):
"""Deactivate convert_chars, verify that both convert_chars and column_maker are deactivated."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
self.deactivate_repository(installed_convert_repository)
self._assert_has_no_installed_repos_with_names("column_maker_0080", "convert_chars_0080")
[docs] def test_0050_reactivate_column_repository(self):
"""Reactivate column_maker. This should not automatically reactivate convert_chars, so column_maker should be displayed as installed but missing repository dependencies."""
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.reactivate_repository(installed_column_repository)
self._assert_has_missing_dependency(installed_column_repository, "convert_chars_0080")
[docs] def test_0055_reactivate_convert_repository(self):
"""Activate convert_chars. Both convert_chars and column_maker should now show as installed."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.reactivate_repository(installed_convert_repository)
self._assert_has_installed_repos_with_names("column_maker_0080", "convert_chars_0080")
self._assert_is_not_missing_dependency(installed_column_repository, "convert_chars_0080")
self._assert_is_not_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0060_uninstall_column_repository(self):
"""Uninstall column_maker. Verify that convert_chars is installed and missing repository dependencies."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self._uninstall_repository(installed_column_repository)
self._assert_has_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0065_reinstall_column_repository(self):
"""Reinstall column_maker without repository dependencies, verify both convert_chars and column_maker are installed."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.reinstall_repository_api(installed_column_repository, install_repository_dependencies=False)
self._assert_has_installed_repos_with_names("column_maker_0080", "convert_chars_0080")
self._assert_is_not_missing_dependency(installed_column_repository, "convert_chars_0080")
self._assert_is_not_missing_dependency(installed_convert_repository, "column_maker_0080")
[docs] def test_0070_uninstall_convert_repository(self):
"""Uninstall convert_chars, verify column_maker installed but missing repository dependencies."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.deactivate_repository(installed_convert_repository)
self._assert_has_missing_dependency(installed_column_repository, "convert_chars_0080")
[docs] def test_0075_uninstall_column_repository(self):
"""Uninstall column_maker, verify that both convert_chars and column_maker are uninstalled."""
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.deactivate_repository(installed_column_repository)
self._assert_has_no_installed_repos_with_names("column_maker_0080", "convert_chars_0080")
[docs] def test_0080_reinstall_convert_repository(self):
"""Reinstall convert_chars with repository dependencies, verify that this installs both convert_chars and column_maker."""
installed_convert_repository = self._get_installed_repository_by_name_owner(
convert_repository_name, common.test_user_1_name
)
installed_column_repository = self._get_installed_repository_by_name_owner(
column_repository_name, common.test_user_1_name
)
self.reinstall_repository_api(installed_convert_repository, install_repository_dependencies=True)
self._assert_has_installed_repos_with_names("column_maker_0080", "convert_chars_0080")
self._assert_is_not_missing_dependency(installed_column_repository, "convert_chars_0080")
self._assert_is_not_missing_dependency(installed_convert_repository, "column_maker_0080")