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Source code for galaxy.webapps.reports.controllers.jobs
import calendar
import logging
import re
from collections import namedtuple
from datetime import (
date,
datetime,
timedelta,
)
from math import (
ceil,
floor,
)
import sqlalchemy as sa
from markupsafe import escape
from sqlalchemy import (
and_,
not_,
or_,
)
from galaxy import (
model,
util,
)
from galaxy.managers.users import get_user_by_email
from galaxy.model import Job
from galaxy.web.legacy_framework import grids
from galaxy.webapps.base.controller import (
BaseUIController,
web,
)
from galaxy.webapps.reports.controllers.query import ReportQueryBuilder
log = logging.getLogger(__name__)
[docs]class Timer:
[docs] def stop(self):
try:
self.stop_time = datetime.now()
self.time_delta = self.stop_time - self.start_time
del self.stop_time
del self.start_time
except NameError:
print("You need to start before you can stop!")
[docs] def time_elapsed(self):
try:
return_time = self.time_delta - self.ERROR
except NameError:
print("You need to start and stop before there's an elapsed time!")
except AttributeError:
return_time = self.time_delta
return return_time
[docs]def sorter(default_sort_id, kwd):
"""
Initialize sorting variables
"""
SortSpec = namedtuple("SortSpec", ["sort_id", "order", "arrow", "exc_order"])
sort_id = kwd.get("sort_id")
order = kwd.get("order")
# Parse the default value
if sort_id == "default":
sort_id = default_sort_id
# Create the sort
if order == "asc":
_order = sa.asc(sort_id)
elif order == "desc":
_order = sa.desc(sort_id)
else:
# In case of default
order = "desc"
_order = sa.desc(sort_id)
# Create an arrow icon to put beside the ordered column
up_arrow = "↑"
down_arrow = "↓"
arrow = " "
if order == "asc":
arrow += down_arrow
else:
arrow += up_arrow
return SortSpec(sort_id, order, arrow, _order)
[docs]def get_spark_time(time_period):
_time_period = 0
if time_period == "days":
_time_period = 1.0
elif time_period == "weeks":
_time_period = 7.0
elif time_period == "months":
_time_period = 30.0
elif time_period == "years":
_time_period = 365.0
else:
time_period = "days"
_time_period = 1.0
return time_period, _time_period
[docs]def get_curr_item(check_item, unique_items):
"""
When rendering by item and destination_id,
render the item uniquely.
"""
if check_item in unique_items:
return ("", unique_items)
unique_items.add(check_item)
return (check_item, unique_items)
[docs]class SpecifiedDateListGrid(grids.Grid):
[docs] class StateColumn(grids.TextColumn):
[docs] def get_value(self, trans, grid, job):
return f'<div class="count-box state-color-{job.state}">{job.state}</div>'
[docs] def filter(self, trans, user, query, column_filter):
if column_filter == "Unfinished":
return query.filter(
not_(
or_(
model.Job.table.c.state == model.Job.states.OK,
model.Job.table.c.state == model.Job.states.ERROR,
model.Job.table.c.state == model.Job.states.DELETED,
)
)
)
return query
[docs] class ToolColumn(grids.TextColumn):
[docs] def filter(self, trans, user, query, column_filter):
if column_filter is not None:
query = query.filter(model.Job.table.c.tool_id == column_filter)
return query
[docs] class CreateTimeColumn(grids.DateTimeColumn):
[docs] def get_value(self, trans, grid, job):
return job.create_time.strftime("%b %d, %Y, %H:%M:%S")
[docs] class UserColumn(grids.GridColumn):
[docs] def get_value(self, trans, grid, job):
if job.user:
return escape(job.get_user_email())
return "anonymous"
[docs] class EmailColumn(grids.GridColumn):
[docs] def filter(self, trans, user, query, column_filter):
if column_filter == "All":
return query
return query.filter(
and_(model.Job.table.c.user_id == model.User.table.c.id, model.User.table.c.email == column_filter)
)
[docs] class DestinationIdColumn(grids.GridColumn):
[docs] def filter(self, trans, user, query, column_filter):
if column_filter == "All":
return query
return query.filter(model.Job.table.c.destination_id == column_filter)
[docs] class SpecifiedDateColumn(grids.GridColumn):
[docs] def filter(self, trans, user, query, column_filter):
if column_filter == "All":
return query
# We are either filtering on a date like YYYY-MM-DD or on a month like YYYY-MM,
# so we need to figure out which type of date we have
if column_filter.count("-") == 2: # We are filtering on a date like YYYY-MM-DD
year, month, day = map(int, column_filter.split("-"))
start_date = date(year, month, day)
end_date = start_date + timedelta(days=1)
if column_filter.count("-") == 1: # We are filtering on a month like YYYY-MM
year, month = map(int, column_filter.split("-"))
start_date = date(year, month, 1)
end_date = start_date + timedelta(days=calendar.monthrange(year, month)[1])
return query.filter(
and_(
self.model_class.table.c.create_time >= start_date, self.model_class.table.c.create_time < end_date
)
)
# Grid definition
use_async = False
model_class = model.Job
title = "Jobs"
default_sort_key = "id"
columns = [
JobIdColumn(
"Id",
key="id",
link=(lambda item: dict(operation="job_info", id=item.id, webapp="reports")),
attach_popup=False,
filterable="advanced",
),
StateColumn("State", key="state", attach_popup=False),
DestinationIdColumn("Destination Id", key="destination_id", attach_popup=False),
ToolColumn(
"Tool Id",
key="tool_id",
link=(lambda item: dict(operation="tool_per_month", id=item.id, webapp="reports")),
attach_popup=False,
),
CreateTimeColumn("Creation Time", key="create_time", attach_popup=False),
UserColumn(
"User",
key="email",
model_class=model.User,
link=(lambda item: dict(operation="user_per_month", id=item.id, webapp="reports")),
attach_popup=False,
),
# Columns that are valid for filtering but are not visible.
SpecifiedDateColumn("Specified Date", key="specified_date", visible=False),
EmailColumn("Email", key="email", model_class=model.User, visible=False),
grids.StateColumn("State", key="state", visible=False, filterable="advanced"),
]
columns.append(
grids.MulticolFilterColumn(
"Search",
cols_to_filter=[columns[1], columns[2]],
key="free-text-search",
visible=False,
filterable="standard",
)
)
default_filter = {"specified_date": "All"}
num_rows_per_page = 50
use_paging = True
[docs] def build_initial_query(self, trans, **kwd):
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
monitor_user_id = get_monitor_id(trans, monitor_email)
return (
trans.sa_session.query(self.model_class)
.join(model.User)
.filter(model.Job.table.c.user_id != monitor_user_id)
.enable_eagerloads(False)
)
[docs]class Jobs(BaseUIController, ReportQueryBuilder):
"""
Class contains functions for querying data requested by user via the webapp. It exposes the functions and
responds to requests with the filled .mako templates.
"""
specified_date_list_grid = SpecifiedDateListGrid()
[docs] @web.expose
def specified_date_handler(self, trans, **kwd):
# We add params to the keyword dict in this method in order to rename the param
# with an "f-" prefix, simulating filtering by clicking a search link. We have
# to take this approach because the "-" character is illegal in HTTP requests.
kwd["sort_id"] = "default"
kwd["order"] = "default"
if "f-specified_date" in kwd and "specified_date" not in kwd:
# The user clicked a State link in the Advanced Search box, so 'specified_date'
# will have been eliminated.
pass
elif "specified_date" not in kwd:
kwd["f-specified_date"] = "All"
else:
kwd["f-specified_date"] = kwd["specified_date"]
if "operation" in kwd:
operation = kwd["operation"].lower()
if operation == "job_info":
return trans.response.send_redirect(web.url_for(controller="jobs", action="job_info", **kwd))
elif operation == "tool_for_month":
kwd["f-tool_id"] = kwd["tool_id"]
elif operation == "tool_per_month":
# The received id is the job id, so we need to get the job's tool_id.
job_id = kwd.get("id", None)
job = get_job(trans, job_id)
kwd["tool_id"] = job.tool_id
return trans.response.send_redirect(web.url_for(controller="jobs", action="tool_per_month", **kwd))
elif operation == "user_for_month":
kwd["f-email"] = util.restore_text(kwd["email"])
elif operation == "user_for_month_by_destination":
kwd["f-email"] = util.restore_text(kwd["email"])
kwd["f-destination_id"] = kwd["destination_id"]
elif operation == "user_per_month":
# The received id is the job id, so we need to get the id of the user
# that submitted the job.
job_id = kwd.get("id", None)
job = get_job(trans, job_id)
kwd["email"] = job.get_user_email()
return trans.response.send_redirect(web.url_for(controller="jobs", action="user_per_month", **kwd))
elif operation == "specified_date_in_error":
kwd["f-state"] = "error"
elif operation == "unfinished":
kwd["f-state"] = "Unfinished"
elif operation == "specified_tool_in_error":
kwd["f-state"] = "error"
kwd["f-tool_id"] = kwd["tool_id"]
return self.specified_date_list_grid(trans, **kwd)
def _calculate_trends_for_jobs(self, sa_session, jobs_query):
trends = dict()
for job in sa_session.execute(jobs_query):
job_day = int(job.date.strftime("%-d")) - 1
job_month = int(job.date.strftime("%-m"))
job_month_name = job.date.strftime("%B")
job_year = job.date.strftime("%Y")
key = str(job_month_name + job_year)
try:
trends[key][job_day] += 1
except KeyError:
job_year = int(job_year)
wday, day_range = calendar.monthrange(job_year, job_month)
trends[key] = [0] * day_range
trends[key][job_day] += 1
return trends
def _calculate_job_table(self, sa_session, jobs_query, by_destination=False):
jobs = []
unique_month_year_strs = set()
for row in sa_session.execute(jobs_query):
month_name = row.date.strftime("%B")
year = int(row.date.strftime("%Y"))
if str(by_destination).lower() == "true":
month_year_str = f"{month_name} {year}"
curr_month_year_str, unique_month_year_strs = get_curr_item(month_year_str, unique_month_year_strs)
if curr_month_year_str == "":
curr_month = ""
curr_year = ""
else:
curr_month = row.date.strftime("%B")
curr_year = row.date.strftime("%Y")
jobs.append(
(
row.date.strftime("%Y-%m"),
row.total_jobs,
curr_month,
curr_year,
row.user_email,
row.destination_id,
row.execute_time,
)
)
else:
jobs.append((row.date.strftime("%Y-%m"), row.total_jobs, month_name, year))
return jobs
[docs] @web.expose
def specified_month_all(self, trans, **kwd):
"""
Queries the DB for all jobs in given month, defaults to current month.
"""
message = ""
PageSpec = namedtuple("PageSpec", ["entries", "offset", "page", "pages_found"])
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("date", kwd)
offset = 0
limit = 10
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
if "entries" in kwd:
entries = int(kwd.get("entries"))
else:
entries = 10
limit = entries * 4
if "offset" in kwd:
offset = int(kwd.get("offset"))
else:
offset = 0
if "page" in kwd:
page = int(kwd.get("page"))
else:
page = 1
# In case we don't know which is the monitor user we will query for all jobs
monitor_user_id = get_monitor_id(trans, monitor_email)
# If specified_date is not received, we'll default to the current month
specified_date = kwd.get("specified_date", datetime.utcnow().strftime("%Y-%m-%d"))
specified_month = specified_date[:7]
year, month = map(int, specified_month.split("-"))
start_date = date(year, month, 1)
end_date = start_date + timedelta(days=calendar.monthrange(year, month)[1])
month_label = start_date.strftime("%B")
year_label = start_date.strftime("%Y")
# Use to make the page table
month_jobs = (
sa.select(
sa.func.date(model.Job.table.c.create_time).label("date"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.where(
sa.and_(
model.Job.table.c.user_id != monitor_user_id,
model.Job.table.c.create_time >= start_date,
model.Job.table.c.create_time < end_date,
)
)
.group_by("date")
.order_by(specs.exc_order)
.offset(offset)
.limit(limit)
)
# Use to make trendline
all_jobs = sa.select(model.Job.table.c.create_time.label("date"), model.Job.table.c.id.label("id")).where(
sa.and_(
model.Job.table.c.user_id != monitor_user_id,
model.Job.table.c.create_time >= start_date,
model.Job.table.c.create_time < end_date,
)
)
trends = dict()
for job in trans.sa_session.execute(all_jobs):
job_hour = int(job.date.strftime("%-H"))
job_day = job.date.strftime("%d")
try:
trends[job_day][job_hour] += 1
except KeyError:
trends[job_day] = [0] * 24
trends[job_day][job_hour] += 1
jobs = []
for row in trans.sa_session.execute(month_jobs):
row_dayname = row.date.strftime("%A")
row_day = row.date.strftime("%d")
jobs.append((row_dayname, row_day, row.total_jobs, row.date))
pages_found = ceil(len(jobs) / float(entries))
page_specs = PageSpec(entries, offset, page, pages_found)
return trans.fill_template(
"/webapps/reports/jobs_specified_month_all.mako",
order=order,
arrow=arrow,
sort_id=sort_id,
month_label=month_label,
year_label=year_label,
month=month,
page_specs=page_specs,
jobs=jobs,
trends=trends,
is_user_jobs_only=monitor_user_id,
message=message,
)
[docs] @web.expose
def specified_month_in_error(self, trans, **kwd):
"""
Queries the DB for the user jobs in error.
"""
message = ""
PageSpec = namedtuple("PageSpec", ["entries", "offset", "page", "pages_found"])
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("date", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
offset = 0
limit = 10
if "entries" in kwd:
entries = int(kwd.get("entries"))
else:
entries = 10
limit = entries * 4
if "offset" in kwd:
offset = int(kwd.get("offset"))
else:
offset = 0
if "page" in kwd:
page = int(kwd.get("page"))
else:
page = 1
# In case we don't know which is the monitor user we will query for all jobs instead
monitor_user_id = get_monitor_id(trans, monitor_email)
# If specified_date is not received, we'll default to the current month
specified_date = kwd.get("specified_date", datetime.utcnow().strftime("%Y-%m-%d"))
specified_month = specified_date[:7]
year, month = map(int, specified_month.split("-"))
start_date = date(year, month, 1)
end_date = start_date + timedelta(days=calendar.monthrange(year, month)[1])
month_label = start_date.strftime("%B")
year_label = start_date.strftime("%Y")
month_jobs_in_error = (
sa.select(
sa.func.date(model.Job.table.c.create_time).label("date"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.where(
sa.and_(
model.Job.table.c.user_id != monitor_user_id,
model.Job.table.c.state == "error",
model.Job.table.c.create_time >= start_date,
model.Job.table.c.create_time < end_date,
)
)
.group_by("date")
.order_by(specs.exc_order)
.offset(offset)
.limit(limit)
)
# Use to make trendline
all_jobs_in_error = sa.select(
model.Job.table.c.create_time.label("date"), model.Job.table.c.id.label("id")
).where(
sa.and_(
model.Job.table.c.user_id != monitor_user_id,
model.Job.table.c.state == "error",
model.Job.table.c.create_time >= start_date,
model.Job.table.c.create_time < end_date,
)
)
trends = dict()
for job in trans.sa_session.execute(all_jobs_in_error):
job_hour = int(job.date.strftime("%-H"))
job_day = job.date.strftime("%d")
try:
trends[job_day][job_hour] += 1
except KeyError:
trends[job_day] = [0] * 24
trends[job_day][job_hour] += 1
jobs = []
for row in trans.sa_session.execute(month_jobs_in_error):
row_dayname = row.date.strftime("%A")
row_day = row.date.strftime("%d")
jobs.append((row_dayname, row_day, row.total_jobs, row.date))
pages_found = ceil(len(jobs) / float(entries))
page_specs = PageSpec(entries, offset, page, pages_found)
return trans.fill_template(
"/webapps/reports/jobs_specified_month_in_error.mako",
order=order,
arrow=arrow,
sort_id=sort_id,
month_label=month_label,
year_label=year_label,
month=month,
jobs=jobs,
trends=trends,
message=message,
is_user_jobs_only=monitor_user_id,
page_specs=page_specs,
)
[docs] @web.expose
def per_month_all(self, trans, **kwd):
"""
Queries the DB for all jobs. Avoids monitor jobs. The
by_destination param will group by User.email and
Job.destination_id.
"""
by_destination = str(kwd.get("by_destination", False)).lower()
message = ""
PageSpec = namedtuple("PageSpec", ["entries", "offset", "page", "pages_found"])
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("date", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
_order = specs.exc_order
offset = 0
limit = 10
if "entries" in kwd:
entries = int(kwd.get("entries"))
else:
entries = 10
limit = entries * 4
if "offset" in kwd:
offset = int(kwd.get("offset"))
else:
offset = 0
if "page" in kwd:
page = int(kwd.get("page"))
else:
page = 1
# In case we don't know which is the monitor user we will query for all jobs
monitor_user_id = get_monitor_id(trans, monitor_email)
# Use to make the page table
if by_destination == "true":
jobs_by_month = (
sa.select(
self.select_month(model.Job.table.c.create_time).label("date"),
model.Job.table.c.destination_id.label("destination_id"),
sa.func.sum(model.Job.table.c.update_time - model.Job.table.c.create_time).label("execute_time"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
model.User.table.c.email.label("user_email"),
)
.where(model.Job.table.c.user_id != monitor_user_id)
.select_from(sa.join(model.Job.table, model.User.table))
.group_by("user_email", "date", "destination_id")
.order_by(_order)
.offset(offset)
.limit(limit)
)
else:
jobs_by_month = (
sa.select(
self.select_month(model.Job.table.c.create_time).label("date"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.where(model.Job.table.c.user_id != monitor_user_id)
.group_by(self.group_by_month(model.Job.table.c.create_time))
.order_by(_order)
.offset(offset)
.limit(limit)
)
# Use to make sparkline
all_jobs = sa.select(
self.select_day(model.Job.table.c.create_time).label("date"), model.Job.table.c.id.label("id")
)
trends = self._calculate_trends_for_jobs(trans.sa_session, all_jobs)
jobs = self._calculate_job_table(trans.sa_session, jobs_by_month, by_destination=by_destination)
pages_found = ceil(len(jobs) / float(entries))
page_specs = PageSpec(entries, offset, page, pages_found)
if by_destination == "true":
page = "/webapps/reports/jobs_per_month_by_user_and_destination.mako"
else:
page = "/webapps/reports/jobs_per_month_all.mako"
return trans.fill_template(
page,
order=order,
arrow=arrow,
sort_id=sort_id,
trends=trends,
jobs=jobs,
is_user_jobs_only=monitor_user_id,
message=message,
page_specs=page_specs,
)
[docs] @web.expose
def per_month_in_error(self, trans, **kwd):
"""
Queries the DB for user jobs in error. Filters out monitor jobs.
"""
message = ""
PageSpec = namedtuple("PageSpec", ["entries", "offset", "page", "pages_found"])
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("date", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
_order = specs.exc_order
offset = 0
limit = 10
if "entries" in kwd:
entries = int(kwd.get("entries"))
else:
entries = 10
limit = entries * 4
if "offset" in kwd:
offset = int(kwd.get("offset"))
else:
offset = 0
if "page" in kwd:
page = int(kwd.get("page"))
else:
page = 1
# In case we don't know which is the monitor user we will query for all jobs
monitor_user_id = get_monitor_id(trans, monitor_email)
# Use to make the page table
jobs_in_error_by_month = (
sa.select(
self.select_month(model.Job.table.c.create_time).label("date"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.where(sa.and_(model.Job.table.c.state == "error", model.Job.table.c.user_id != monitor_user_id))
.group_by(self.group_by_month(model.Job.table.c.create_time))
.order_by(_order)
.offset(offset)
.limit(limit)
)
# Use to make trendline
all_jobs = sa.select(
self.select_day(model.Job.table.c.create_time).label("date"), model.Job.table.c.id.label("id")
).where(sa.and_(model.Job.table.c.state == "error", model.Job.table.c.user_id != monitor_user_id))
trends = self._calculate_trends_for_jobs(trans.sa_session, all_jobs)
jobs = self._calculate_job_table(trans.sa_session, jobs_in_error_by_month)
pages_found = ceil(len(jobs) / float(entries))
page_specs = PageSpec(entries, offset, page, pages_found)
return trans.fill_template(
"/webapps/reports/jobs_per_month_in_error.mako",
order=order,
arrow=arrow,
sort_id=sort_id,
trends=trends,
jobs=jobs,
message=message,
is_user_jobs_only=monitor_user_id,
page_specs=page_specs,
offset=offset,
limit=limit,
)
[docs] @web.expose
def per_user(self, trans, **kwd):
"""
Queries the DB for jobs per user. The by_destination
param will group by Job.destination_id.
"""
by_destination = str(kwd.get("by_destination", False)).lower()
total_time = Timer()
q_time = Timer()
total_time.start()
params = util.Params(kwd)
message = ""
PageSpec = namedtuple("PageSpec", ["entries", "offset", "page", "pages_found"])
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("user_email", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
_order = specs.exc_order
time_period = kwd.get("spark_time")
time_period, _time_period = get_spark_time(time_period)
spark_limit = 30
offset = 0
limit = 10
if "entries" in kwd:
entries = int(kwd.get("entries"))
else:
entries = 10
limit = entries * 4
if "offset" in kwd:
offset = int(kwd.get("offset"))
else:
offset = 0
if "page" in kwd:
page = int(kwd.get("page"))
else:
page = 1
jobs = []
if by_destination == "true":
jobs_per_user = (
sa.select(
model.User.table.c.email.label("user_email"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
model.Job.table.c.destination_id.label("destination_id"),
)
.select_from(sa.outerjoin(model.Job.table, model.User.table))
.group_by("user_email", "destination_id")
.order_by(_order)
.offset(offset)
.limit(limit)
)
else:
jobs_per_user = (
sa.select(
model.User.table.c.email.label("user_email"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.select_from(sa.outerjoin(model.Job.table, model.User.table))
.group_by("user_email")
.order_by(_order)
.offset(offset)
.limit(limit)
)
q_time.start()
unique_users = set()
for row in trans.sa_session.execute(jobs_per_user):
if row.user_email is None:
curr_user, unique_users = get_curr_item("Anonymous", unique_users)
if by_destination == "true":
jobs.append((curr_user, row.destination_id, row.total_jobs))
else:
jobs.append((curr_user, row.total_jobs))
elif row.user_email == monitor_email:
continue
else:
curr_user, unique_users = get_curr_item(row.user_email, unique_users)
if by_destination == "true":
jobs.append((curr_user, row.destination_id, row.total_jobs))
else:
jobs.append((curr_user, row.total_jobs))
q_time.stop()
query1time = q_time.time_elapsed()
users = sa.select(model.User.table.c.email).select_from(model.User.table)
all_jobs_per_user = (
sa.select(
model.Job.table.c.id.label("id"),
model.Job.table.c.create_time.label("date"),
model.User.table.c.email.label("user_email"),
)
.select_from(sa.outerjoin(model.Job.table, model.User.table))
.where(model.User.table.c.email.in_(users))
)
currday = datetime.today()
trends = dict()
q_time.start()
for job in trans.sa_session.execute(all_jobs_per_user):
if job.user_email is None:
curr_user = "Anonymous"
else:
curr_user = re.sub(r"\W+", "", job.user_email)
try:
day = currday - job.date
except TypeError:
day = currday - datetime.date(job.date)
day = day.days
container = floor(day / _time_period)
container = int(container)
try:
if container < spark_limit:
trends[curr_user][container] += 1
except KeyError:
trends[curr_user] = [0] * spark_limit
if container < spark_limit:
trends[curr_user][container] += 1
q_time.stop()
query2time = q_time.time_elapsed()
pages_found = ceil(len(jobs) / float(entries))
page_specs = PageSpec(entries, offset, page, pages_found)
total_time.stop()
ttime = total_time.time_elapsed()
if by_destination == "true":
page = "/webapps/reports/jobs_per_user_by_destination.mako"
else:
page = "/webapps/reports/jobs_per_user.mako"
return trans.fill_template(
page,
order=order,
arrow=arrow,
sort_id=sort_id,
spark_limit=spark_limit,
time_period=time_period,
q1time=query1time,
q2time=query2time,
ttime=ttime,
trends=trends,
jobs=jobs,
message=message,
page_specs=page_specs,
)
[docs] @web.expose
def user_per_month(self, trans, **kwd):
"""
Queries the DB for jobs per user per month. The
by_destination param will group by Job.destination_id.
"""
by_destination = str(kwd.get("by_destination", False)).lower()
params = util.Params(kwd)
message = ""
email = util.restore_text(params.get("email", ""))
specs = sorter("date", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
_order = specs.exc_order
if by_destination == "true":
q = (
sa.select(
self.select_month(model.Job.table.c.create_time).label("date"),
model.Job.table.c.destination_id.label("destination_id"),
sa.func.sum(model.Job.table.c.update_time - model.Job.table.c.create_time).label("execute_time"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.where(model.User.table.c.email == email)
.select_from(sa.join(model.Job.table, model.User.table))
.group_by("date", "destination_id")
.order_by(_order)
)
else:
q = (
sa.select(
self.select_month(model.Job.table.c.create_time).label("date"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.where(model.User.table.c.email == email)
.select_from(sa.join(model.Job.table, model.User.table))
.group_by(self.group_by_month(model.Job.table.c.create_time))
.order_by(_order)
)
all_jobs_per_user = (
sa.select(model.Job.table.c.create_time.label("date"), model.Job.table.c.id.label("job_id"))
.where(sa.and_(model.User.table.c.email == email))
.select_from(sa.join(model.Job.table, model.User.table))
)
trends = dict()
for job in trans.sa_session.execute(all_jobs_per_user):
job_day = int(job.date.strftime("%-d")) - 1
job_month = int(job.date.strftime("%-m"))
job_month_name = job.date.strftime("%B")
job_year = job.date.strftime("%Y")
key = str(job_month_name + job_year)
try:
trends[key][job_day] += 1
except KeyError:
job_year = int(job_year)
wday, day_range = calendar.monthrange(job_year, job_month)
trends[key] = [0] * day_range
trends[key][job_day] += 1
jobs = []
unique_month_year_strs = set()
for row in trans.sa_session.execute(q):
if by_destination == "true":
month_year_str = f"{row.date.strftime('%B')} {row.date.strftime('%Y')}"
curr_month_year_str, unique_month_year_strs = get_curr_item(month_year_str, unique_month_year_strs)
if curr_month_year_str == "":
curr_month = ""
curr_year = ""
else:
curr_month = row.date.strftime("%B")
curr_year = row.date.strftime("%Y")
jobs.append(
(
row.date.strftime("%Y-%m"),
row.execute_time,
row.total_jobs,
curr_month,
curr_year,
row.destination_id,
)
)
else:
jobs.append(
(row.date.strftime("%Y-%m"), row.total_jobs, row.date.strftime("%B"), row.date.strftime("%Y"))
)
if by_destination == "true":
page = "/webapps/reports/jobs_user_per_month_by_destination.mako"
else:
page = "/webapps/reports/jobs_user_per_month.mako"
return trans.fill_template(
page,
order=order,
arrow=arrow,
sort_id=sort_id,
id=kwd.get("id"),
trends=trends,
email=util.sanitize_text(email),
jobs=jobs,
message=message,
)
[docs] @web.expose
def per_tool(self, trans, **kwd):
message = ""
PageSpec = namedtuple("PageSpec", ["entries", "offset", "page", "pages_found"])
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("tool_id", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
_order = specs.exc_order
time_period = kwd.get("spark_time")
time_period, _time_period = get_spark_time(time_period)
spark_limit = 30
offset = 0
limit = 10
if "entries" in kwd:
entries = int(kwd.get("entries"))
else:
entries = 10
limit = entries * 4
if "offset" in kwd:
offset = int(kwd.get("offset"))
else:
offset = 0
if "page" in kwd:
page = int(kwd.get("page"))
else:
page = 1
# In case we don't know which is the monitor user we will query for all jobs
monitor_user_id = get_monitor_id(trans, monitor_email)
jobs = []
q = (
sa.select(
model.Job.table.c.tool_id.label("tool_id"), sa.func.count(model.Job.table.c.id).label("total_jobs")
)
.where(model.Job.table.c.user_id != monitor_user_id)
.group_by("tool_id")
.order_by(_order)
.offset(offset)
.limit(limit)
)
all_jobs_per_tool = sa.select(
model.Job.table.c.tool_id.label("tool_id"),
model.Job.table.c.id.label("id"),
self.select_day(model.Job.table.c.create_time).label("date"),
).where(model.Job.table.c.user_id != monitor_user_id)
currday = date.today()
trends = dict()
for job in trans.sa_session.execute(all_jobs_per_tool):
curr_tool = re.sub(r"\W+", "", str(job.tool_id))
try:
day = currday - job.date
except TypeError:
day = currday - datetime.date(job.date)
day = day.days
container = floor(day / _time_period)
container = int(container)
try:
if container < spark_limit:
trends[curr_tool][container] += 1
except KeyError:
trends[curr_tool] = [0] * spark_limit
if container < spark_limit:
trends[curr_tool][container] += 1
for row in trans.sa_session.execute(q):
jobs.append((row.tool_id, row.total_jobs))
pages_found = ceil(len(jobs) / float(entries))
page_specs = PageSpec(entries, offset, page, pages_found)
return trans.fill_template(
"/webapps/reports/jobs_per_tool.mako",
order=order,
arrow=arrow,
sort_id=sort_id,
spark_limit=spark_limit,
time_period=time_period,
trends=trends,
jobs=jobs,
message=message,
is_user_jobs_only=monitor_user_id,
page_specs=page_specs,
)
[docs] @web.expose
def errors_per_tool(self, trans, **kwd):
"""
Queries the DB for user jobs in error. Filters out monitor jobs.
"""
message = ""
PageSpec = namedtuple("PageSpec", ["entries", "offset", "page", "pages_found"])
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("tool_id", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
_order = specs.exc_order
time_period = kwd.get("spark_time")
time_period, _time_period = get_spark_time(time_period)
spark_limit = 30
offset = 0
limit = 10
if "entries" in kwd:
entries = int(kwd.get("entries"))
else:
entries = 10
limit = entries * 4
if "offset" in kwd:
offset = int(kwd.get("offset"))
else:
offset = 0
if "page" in kwd:
page = int(kwd.get("page"))
else:
page = 1
# In case we don't know which is the monitor user we will query for all jobs
monitor_user_id = get_monitor_id(trans, monitor_email)
jobs_in_error_per_tool = (
sa.select(
model.Job.table.c.tool_id.label("tool_id"), sa.func.count(model.Job.table.c.id).label("total_jobs")
)
.where(sa.and_(model.Job.table.c.state == "error", model.Job.table.c.user_id != monitor_user_id))
.group_by("tool_id")
.order_by(_order)
.offset(offset)
.limit(limit)
)
all_jobs_per_tool_errors = sa.select(
self.select_day(model.Job.table.c.create_time).label("date"),
model.Job.table.c.id.label("id"),
model.Job.table.c.tool_id.label("tool_id"),
).where(sa.and_(model.Job.table.c.state == "error", model.Job.table.c.user_id != monitor_user_id))
currday = date.today()
trends = dict()
for job in trans.sa_session.execute(all_jobs_per_tool_errors):
curr_tool = re.sub(r"\W+", "", str(job.tool_id))
try:
day = currday - job.date
except TypeError:
day = currday - datetime.date(job.date)
# convert day into days/weeks/months/years
day = day.days
container = floor(day / _time_period)
container = int(container)
try:
if container < spark_limit:
trends[curr_tool][container] += 1
except KeyError:
trends[curr_tool] = [0] * spark_limit
if day < spark_limit:
trends[curr_tool][container] += 1
jobs = []
for row in trans.sa_session.execute(jobs_in_error_per_tool):
jobs.append((row.total_jobs, row.tool_id))
pages_found = ceil(len(jobs) / float(entries))
page_specs = PageSpec(entries, offset, page, pages_found)
return trans.fill_template(
"/webapps/reports/jobs_errors_per_tool.mako",
order=order,
arrow=arrow,
sort_id=sort_id,
spark_limit=spark_limit,
time_period=time_period,
trends=trends,
jobs=jobs,
message=message,
is_user_jobs_only=monitor_user_id,
page_specs=page_specs,
)
[docs] @web.expose
def tool_per_month(self, trans, **kwd):
message = ""
params = util.Params(kwd)
monitor_email = params.get("monitor_email", "monitor@bx.psu.edu")
specs = sorter("date", kwd)
sort_id = specs.sort_id
order = specs.order
arrow = specs.arrow
_order = specs.exc_order
# In case we don't know which is the monitor user we will query for all jobs
monitor_user_id = get_monitor_id(trans, monitor_email)
tool_id = params.get("tool_id", "Add a column1")
specified_date = params.get("specified_date", datetime.utcnow().strftime("%Y-%m-%d"))
q = (
sa.select(
self.select_month(model.Job.table.c.create_time).label("date"),
sa.func.count(model.Job.table.c.id).label("total_jobs"),
)
.where(sa.and_(model.Job.table.c.tool_id == tool_id, model.Job.table.c.user_id != monitor_user_id))
.group_by(self.group_by_month(model.Job.table.c.create_time))
.order_by(_order)
)
# Use to make sparkline
all_jobs_for_tool = sa.select(
self.select_month(model.Job.table.c.create_time).label("month"),
self.select_day(model.Job.table.c.create_time).label("day"),
model.Job.table.c.id.label("id"),
).where(sa.and_(model.Job.table.c.tool_id == tool_id, model.Job.table.c.user_id != monitor_user_id))
trends = dict()
for job in trans.sa_session.execute(all_jobs_for_tool):
job_day = int(job.day.strftime("%-d")) - 1
job_month = int(job.month.strftime("%-m"))
job_month_name = job.month.strftime("%B")
job_year = job.month.strftime("%Y")
key = str(job_month_name + job_year)
try:
trends[key][job_day] += 1
except KeyError:
job_year = int(job_year)
wday, day_range = calendar.monthrange(job_year, job_month)
trends[key] = [0] * day_range
trends[key][job_day] += 1
jobs = []
for row in trans.sa_session.execute(q):
jobs.append((row.date.strftime("%Y-%m"), row.total_jobs, row.date.strftime("%B"), row.date.strftime("%Y")))
return trans.fill_template(
"/webapps/reports/jobs_tool_per_month.mako",
order=order,
arrow=arrow,
sort_id=sort_id,
specified_date=specified_date,
tool_id=tool_id,
trends=trends,
jobs=jobs,
message=message,
is_user_jobs_only=monitor_user_id,
)
[docs] @web.expose
def job_info(self, trans, **kwd):
message = ""
job = trans.sa_session.get(Job, trans.security.decode_id(kwd.get("id", "")))
return trans.fill_template("/webapps/reports/job_info.mako", job=job, message=message)
# ---- Utility methods -------------------------------------------------------
[docs]def get_monitor_id(trans, monitor_email):
"""
A convenience method to obtain the monitor job id.
"""
monitor_user_id = None
monitor_row = get_user_by_email(trans.sa_session, monitor_email)
if monitor_row is not None:
monitor_user_id = monitor_row[0]
return monitor_user_id