galaxy_test.driver package¶

Submodules¶

galaxy_test.driver.driver_util module¶

Scripts for drivers of Galaxy functional tests.

galaxy_test.driver.driver_util.copy_database_template(source, db_path)[source]¶

Copy a ‘clean’ sqlite template database.

From file or URL to specified path for sqlite database.

galaxy_test.driver.driver_util.build_logger()[source]¶: Build a logger for test driver script.

galaxy_test.driver.driver_util.drive_test(test_driver_class)[source]¶: Instantiate driver class, run, and exit appropriately.

galaxy_test.driver.driver_util.database_conf(db_path, prefix='GALAXY', prefer_template_database=False)[source]¶: Find (and populate if needed) Galaxy database connection.

galaxy_test.driver.driver_util.get_webapp_global_conf()[source]¶: Get the global_conf dictionary sent to app_factory.

galaxy_test.driver.driver_util.setup_galaxy_config(tmpdir, use_test_file_dir=False, default_install_db_merged=True, default_tool_data_table_config_path=None, default_shed_tool_data_table_config=None, default_job_config_file=None, enable_tool_shed_check=False, default_tool_conf=None, shed_tool_conf=None, datatypes_conf=None, update_integrated_tool_panel=False, prefer_template_database=False, log_format=None, conda_auto_init=False, conda_auto_install=False, use_shared_connection_for_amqp=False, allow_tool_conf_override: bool = True, allow_path_paste=False)[source]¶: Setup environment and build config for test Galaxy instance.

class galaxy_test.driver.driver_util.TestDriver[source]¶

Bases: object

Responsible for the life-cycle of a Galaxy-style functional test.

Sets up servers, configures tests, and tears things down. This is somewhat like a Python TestCase - but different because it is meant to provide a main() endpoint.

__init__()[source]¶: Setup tracked resources.

setup(config_object=None)[source]¶: Called before tests are built.

build_tests()[source]¶: After environment is setup, setup tests.

tear_down()[source]¶: Cleanup resources tracked by this object.

stop_servers()[source]¶

mkdtemp() → str[source]¶: Return a temp directory that is properly cleaned up or not based on the config.

galaxy_test.driver.driver_util.wait_for_http_server(host, port, prefix=None, sleep_amount=0.1, sleep_tries=150)[source]¶: Wait for an HTTP server to boot up.

galaxy_test.driver.integration_setup module¶

Test classes that should be shared between test scenarios.

galaxy_test.driver.integration_setup.get_posix_file_source_config(root_dir: str, roles: str, groups: str, include_test_data_dir: bool) → str[source]¶

galaxy_test.driver.integration_setup.create_file_source_config_file_on(temp_dir, root_dir, include_test_data_dir, required_role_expression, required_group_expression)[source]¶

class galaxy_test.driver.integration_setup.PosixFileSourceSetup[source]¶

Bases: object

root_dir: str¶

include_test_data_dir: ClassVar[bool] = False¶

classmethod handle_galaxy_config_kwds(config, clazz_=None, required_role_expression='user@bx.psu.edu', required_group_expression='')[source]¶

galaxy_test.driver.integration_util module¶

Utilities for constructing Galaxy integration tests.

Tests that start an actual Galaxy server with a particular configuration in order to test something that cannot be tested with the default functional/api testing configuration.