Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

galaxy_test.driver package

Submodules

galaxy_test.driver.driver_util module

Scripts for drivers of Galaxy functional tests.

galaxy_test.driver.driver_util.copy_database_template(source, db_path)

Copy a ‘clean’ sqlite template database.

From file or URL to specified path for sqlite database.

galaxy_test.driver.driver_util.build_logger()

Build a logger for test driver script.

galaxy_test.driver.driver_util.drive_test(test_driver_class)

Instantiate driver class, run, and exit appropriately.

galaxy_test.driver.driver_util.database_conf(db_path, prefix='GALAXY', prefer_template_database=False)

Find (and populate if needed) Galaxy database connection.

galaxy_test.driver.driver_util.get_webapp_global_conf()

Get the global_conf dictionary sent to app_factory.

galaxy_test.driver.driver_util.setup_galaxy_config(tmpdir, use_test_file_dir=False, default_install_db_merged=True, default_tool_data_table_config_path=None, default_shed_tool_data_table_config=None, default_job_config_file=None, enable_tool_shed_check=False, default_tool_conf=None, shed_tool_conf=None, datatypes_conf=None, update_integrated_tool_panel=False, prefer_template_database=False, log_format=None, conda_auto_init=False, conda_auto_install=False, use_shared_connection_for_amqp=False, allow_tool_conf_override: bool = True, allow_path_paste=False)

Setup environment and build config for test Galaxy instance.

class galaxy_test.driver.driver_util.TestDriver

Bases: object

Responsible for the life-cycle of a Galaxy-style functional test.

Sets up servers, configures tests, and tears things down. This is somewhat like a Python TestCase - but different because it is meant to provide a main() endpoint.

__init__()

Setup tracked resources.

setup(config_object=None)

Called before tests are built.

build_tests()

After environment is setup, setup tests.

tear_down()

Cleanup resources tracked by this object.

stop_servers()

mkdtemp() → str

Return a temp directory that is properly cleaned up or not based on the config.

galaxy_test.driver.driver_util.wait_for_http_server(host, port, prefix=None, sleep_amount=0.1, sleep_tries=150)

Wait for an HTTP server to boot up.

galaxy_test.driver.integration_setup module

Test classes that should be shared between test scenarios.

galaxy_test.driver.integration_setup.get_posix_file_source_config(root_dir: str, roles: str, groups: str, include_test_data_dir: bool) → str

galaxy_test.driver.integration_setup.create_file_source_config_file_on(temp_dir, root_dir, include_test_data_dir, required_role_expression, required_group_expression)

class galaxy_test.driver.integration_setup.PosixFileSourceSetup

Bases: object

root_dir: str

include_test_data_dir: ClassVar[bool] = False

classmethod handle_galaxy_config_kwds(config, clazz_=None, required_role_expression='user@bx.psu.edu', required_group_expression='')

galaxy_test.driver.integration_util module

Utilities for constructing Galaxy integration tests.

Tests that start an actual Galaxy server with a particular configuration in order to test something that cannot be tested with the default functional/api testing configuration.

galaxy_test.driver.integration_util.skip_if_jenkins(cls)

galaxy_test.driver.integration_util.skip_unless_amqp()

galaxy_test.driver.integration_util.skip_unless_postgres()

galaxy_test.driver.integration_util.skip_unless_executable(executable)

galaxy_test.driver.integration_util.skip_unless_docker()

galaxy_test.driver.integration_util.skip_unless_kubernetes()

galaxy_test.driver.integration_util.k8s_config_path()

galaxy_test.driver.integration_util.skip_unless_fixed_port()

galaxy_test.driver.integration_util.skip_if_github_workflow()

galaxy_test.driver.integration_util.skip_unless_environ(env_var)

class galaxy_test.driver.integration_util.IntegrationInstance

Bases: UsesApiTestCaseMixin, UsesCeleryTasks

Unit test case with utilities for spinning up Galaxy.

prefer_template_database = True

isolate_galaxy_config = True

dataset_populator: Optional[BaseDatasetPopulator]

classmethod setUpClass()

Configure and start Galaxy for a test.

classmethod tearDownClass()

Shutdown Galaxy server and cleanup temp directory.

tearDown()

setUp()

restart(handle_reconfig=None)

classmethod temp_config_dir(name)

history_id() → Iterator[str]

class galaxy_test.driver.integration_util.IntegrationTestCase

Bases: IntegrationInstance, TestCase

Unit TestCase with utilities for spinning up Galaxy.

dataset_populator: Optional[BaseDatasetPopulator]

url: str

galaxy_test.driver.integration_util.integration_module_instance(clazz: Type[IntegrationInstanceObject])

galaxy_test.driver.integration_util.integration_tool_runner(tool_ids)

galaxy_test.driver.test_logging module

galaxy_test.driver.testcase module

class galaxy_test.driver.testcase.DrivenFunctionalTestCase

Bases: FunctionalTestCase

Variant of FunctionalTestCase that can launch Galaxy instances.

galaxy_driver_class

alias of TestDriver

host: str

port: Optional[str]

url: str

keepOutdir: str

test_data_resolver: TestDataResolver