Source code for galaxy.webapps.galaxy.api.forms
"""
API operations on FormDefinition objects.
"""
import logging
from sqlalchemy import select
from galaxy import web
from galaxy.forms.forms import form_factory
from galaxy.managers.context import ProvidesUserContext
from galaxy.managers.forms import FormManager
from galaxy.model import FormDefinition
from galaxy.model.base import transaction
from galaxy.schema.fields import DecodedDatabaseIdField
from galaxy.util import XML
from galaxy.webapps.base.controller import url_for
from galaxy.webapps.galaxy.api import (
depends,
DependsOnTrans,
Router,
)
from . import BaseGalaxyAPIController
log = logging.getLogger(__name__)
router = Router(tags=["forms"])
[docs]@router.cbv
class FastAPIForms:
form_manager: FormManager = depends(FormManager)
[docs] @router.delete("/api/forms/{id}", require_admin=True)
def delete(self, id: DecodedDatabaseIdField, trans: ProvidesUserContext = DependsOnTrans):
form = self.form_manager.get(trans, id)
self.form_manager.delete(trans, form)
[docs] @router.post("/api/forms/{id}/undelete", require_admin=True)
def undelete(self, id: DecodedDatabaseIdField, trans: ProvidesUserContext = DependsOnTrans):
form = self.form_manager.get(trans, id)
self.form_manager.undelete(trans, form)
[docs]class FormDefinitionAPIController(BaseGalaxyAPIController):
[docs] @web.legacy_expose_api
def index(self, trans, **kwd):
"""
GET /api/forms
Displays a collection (list) of forms.
"""
if not trans.user_is_admin:
trans.response.status = 403
return "You are not authorized to view the list of forms."
rval = []
form_defs = trans.sa_session.scalars(select(FormDefinition))
for form_definition in form_defs:
item = form_definition.to_dict(
value_mapper={"id": trans.security.encode_id, "form_definition_current_id": trans.security.encode_id}
)
item["url"] = url_for("form", id=trans.security.encode_id(form_definition.id))
rval.append(item)
return rval
[docs] @web.legacy_expose_api
def show(self, trans, id, **kwd):
"""
GET /api/forms/{encoded_form_id}
Displays information about a form.
"""
form_definition_id = id
try:
decoded_form_definition_id = trans.security.decode_id(form_definition_id)
except TypeError:
trans.response.status = 400
return f"Malformed form definition id ( {str(form_definition_id)} ) specified, unable to decode."
try:
form_definition = trans.sa_session.get(FormDefinition, decoded_form_definition_id)
except Exception:
form_definition = None
if not form_definition or not trans.user_is_admin:
trans.response.status = 400
return f"Invalid form definition id ( {str(form_definition_id)} ) specified."
item = form_definition.to_dict(
view="element",
value_mapper={"id": trans.security.encode_id, "form_definition_current_id": trans.security.encode_id},
)
item["url"] = url_for("form", id=form_definition_id)
return item
[docs] @web.legacy_expose_api
def create(self, trans, payload, **kwd):
"""
POST /api/forms
Creates a new form.
"""
if not trans.user_is_admin:
trans.response.status = 403
return "You are not authorized to create a new form."
xml_text = payload.get("xml_text", None)
if xml_text is None:
trans.response.status = 400
return "Missing required parameter 'xml_text'."
# enhance to allow creating from more than just xml
form_definition = form_factory.from_elem(XML(xml_text))
trans.sa_session.add(form_definition)
with transaction(trans.sa_session):
trans.sa_session.commit()
encoded_id = trans.security.encode_id(form_definition.id)
item = form_definition.to_dict(
view="element",
value_mapper={"id": trans.security.encode_id, "form_definition_current_id": trans.security.encode_id},
)
item["url"] = url_for("form", id=encoded_id)
return [item]