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Source code for galaxy.model.dataset_collections.registry

from typing import (
    List,
    Type,
)

from galaxy import model
from .types import (
    BaseDatasetCollectionType,
    list,
    paired,
    paired_or_unpaired,
    record,
)

PLUGIN_CLASSES: List[Type[BaseDatasetCollectionType]] = [
    list.ListDatasetCollectionType,
    paired.PairedDatasetCollectionType,
    record.RecordDatasetCollectionType,
    paired_or_unpaired.PairedOrUnpairedDatasetCollectionType,
]




class DatasetCollectionTypesRegistry:


    def __init__(self):
        self.__plugins = {p.collection_type: p() for p in PLUGIN_CLASSES}




    def get(self, plugin_type):
        return self.__plugins[plugin_type]




    def prototype(self, plugin_type, fields=None):
        plugin_type_object = self.get(plugin_type)
        if not hasattr(plugin_type_object, "prototype_elements"):
            raise Exception(f"Cannot pre-determine structure for collection of type {plugin_type}")

        dataset_collection = model.DatasetCollection()
        for e in plugin_type_object.prototype_elements(fields=fields):
            e.collection = dataset_collection
        return dataset_collection




DATASET_COLLECTION_TYPES_REGISTRY = DatasetCollectionTypesRegistry()