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Source code for galaxy.files.sources.galaxy

"""Static Galaxy file sources - ftp and libraries."""

from typing import (
    cast,
    Optional,
)

from typing_extensions import Unpack

from galaxy.files.sources import PluginKind
from .posix import (
    PosixFilesSource,
    PosixFilesSourceProperties,
)


[docs]class UserFtpFilesSource(PosixFilesSource): plugin_type = "gxftp" plugin_kind = PluginKind.stock
[docs] def __init__(self, **kwd: Unpack[PosixFilesSourceProperties]): posix_kwds: PosixFilesSourceProperties = dict( id="_ftp", root="${user.ftp_dir}", label="FTP Directory", doc="Galaxy User's FTP Directory", writable=True, ) posix_kwds.update(kwd) if "delete_on_realize" not in posix_kwds: file_sources_config = kwd["file_sources_config"] posix_kwds["delete_on_realize"] = cast(bool, file_sources_config.ftp_upload_purge) super().__init__(**posix_kwds)
[docs] def get_prefix(self) -> Optional[str]: return None
[docs] def get_scheme(self) -> str: return "gxftp"
[docs]class LibraryImportFilesSource(PosixFilesSource): plugin_type = "gximport" plugin_kind = PluginKind.stock
[docs] def __init__(self, **kwd: Unpack[PosixFilesSourceProperties]): posix_kwds: PosixFilesSourceProperties = dict( id="_import", root="${config.library_import_dir}", label="Library Import Directory", doc="Galaxy's library import directory", ) posix_kwds.update(kwd) super().__init__(**posix_kwds)
[docs] def get_prefix(self) -> Optional[str]: return None
[docs] def get_scheme(self) -> str: return "gximport"
[docs]class UserLibraryImportFilesSource(PosixFilesSource): plugin_type = "gxuserimport" plugin_kind = PluginKind.stock
[docs] def __init__(self, **kwd: Unpack[PosixFilesSourceProperties]): posix_kwds: PosixFilesSourceProperties = dict( id="_userimport", root="${config.user_library_import_dir}/${user.email}", label="Library User Import Directory", doc="Galaxy's user library import directory", ) posix_kwds.update(kwd) super().__init__(**posix_kwds)
[docs] def get_prefix(self) -> Optional[str]: return None
[docs] def get_scheme(self) -> str: return "gxuserimport"
__all__ = ("UserFtpFilesSource", "LibraryImportFilesSource", "UserLibraryImportFilesSource")