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Source code for galaxy.files.sources.galaxy

"""Static Galaxy file sources - ftp and libraries."""

from .posix import PosixFilesSource


[docs]class UserFtpFilesSource(PosixFilesSource): plugin_type = 'gxftp'
[docs] def __init__(self, label="FTP Directory", doc="Galaxy User's FTP Directory", root="${user.ftp_dir}", **kwd): posix_kwds = dict( id="_ftp", root=root, label=label, doc=doc, writable=True, ) posix_kwds.update(kwd) if "delete_on_realize" not in posix_kwds: file_sources_config = kwd.get("file_sources_config") posix_kwds["delete_on_realize"] = file_sources_config.ftp_upload_purge super().__init__(**posix_kwds)
[docs] def get_prefix(self): return None
[docs] def get_scheme(self): return "gxftp"
[docs]class LibraryImportFilesSource(PosixFilesSource): plugin_type = 'gximport'
[docs] def __init__(self, label="Library Import Directory", doc="Galaxy's library import directory", root="${config.library_import_dir}", **kwd): posix_kwds = dict( id="_import", root=root, label=label, doc=doc, ) posix_kwds.update(kwd) super().__init__(**posix_kwds)
[docs] def get_prefix(self): return None
[docs] def get_scheme(self): return "gximport"
[docs]class UserLibraryImportFilesSource(PosixFilesSource): plugin_type = 'gxuserimport'
[docs] def __init__(self, label="Library User Import Directory", doc="Galaxy's user library import directory", root="${config.user_library_import_dir}/${user.email}", **kwd): posix_kwds = dict( id="_userimport", root=root, label=label, doc=doc, ) posix_kwds.update(kwd) super().__init__(**posix_kwds)
[docs] def get_prefix(self): return None
[docs] def get_scheme(self): return "gxuserimport"
__all__ = ('UserFtpFilesSource', 'LibraryImportFilesSource', 'UserLibraryImportFilesSource')