21.09

Enhancements

• New User Welcome page (thanks to @astrovsky01). Pull Request 11085

• GPU enabled jupyter notebook for machine learning powered by Jupyter lab and Tensorflow (thanks to @anuprulez). Pull Request 11484

• NCBI Datasets data source tool Pull Request 11738

• Feature/6965/change datatype and dbkey (thanks to @assuntad23). Pull Request 11799

• Add “View Details” button for collections Pull Request 12261

• Vuefy and improve granularity for tool HTML sanitization Pull Request 12283

• Implement tool panel views. Pull Request 12327

• Implement news webhook to handle release announcements (thanks to @hexylena). Pull Request 12396

• Various fixes and enhancements for metadata_strategy: extended Pull Request 12785

• Convert/standardize to fstrings across lib Pull Request 11338

• Added documentation for FASTQ datatypes and implemented quality check (thanks to @bernt-matthias). Pull Request 11931

• Make dataset preview for h5mlm datatype (thanks to @qiagu). Pull Request 11935

• Add datatypes for Structural Materials Hexrd application (thanks to @jj-umn). Pull Request 11957

• Adding new subclass types (thanks to @maikenp). Pull Request 12097

• Converters: use target datatype (thanks to @bernt-matthias). Pull Request 12185

• Add bref3 datatype (thanks to @gallardoalba). Pull Request 12199

• Converters: add missing tests and add linting to converter tests (thanks to @bernt-matthias). Pull Request 12202

• Converters: Unify converters to tabix and bgzip (thanks to @bernt-matthias). Pull Request 12213

• Unify dcd, trr, xtc datatype converters (thanks to @bernt-matthias). Pull Request 12224

• Unify bcf datatype converters (thanks to @bernt-matthias). Pull Request 12225

• Add “ExpressionSet RData object” Datatype (thanks to @mtekman). Pull Request 12336

• Parse sam metadata from sam files (thanks to @bernt-matthias). Pull Request 12392

• Add ONNX datatype (thanks to @anuprulez). Pull Request 12429

• Add support for RDS files and improvements for RData (thanks to @bernt-matthias). Pull Request 12712

• Changes to Collection Operation Help sections and parameter names Pull Request 11068

• Update bam.iobio interactive tool wrapper (thanks to @luke-c-sargent). Pull Request 11537

• Add tool for exporting individual files to galaxy file source plugins. Pull Request 11613

• Update AskOmics interactive tool to 4.3.1 (thanks to @abretaud). Pull Request 12159

• Add <creator> to the tool schema template, use live links in xsd Pull Request 12242

• Systematic handling of remotely required tool files. Pull Request 12250

• Allow bio.tools mappings for legacy tools. Pull Request 12289

• Allow skipping sanitization of / char in export_remote tool Pull Request 12372

• Lock location file before adding values Pull Request 12446

• Improve error handling in DirectoryUriToolParameter validation (thanks to @davelopez). Pull Request 12760

• Beta history selenium updates and assorted bug fixes Pull Request 12351

• Document how to run a local UI client against a remote Galaxy server (thanks to @OlegZharkov). Pull Request 12356

• Charts downloads fixes and enhancements. Pull Request 12726

• SGE DRMAA example for queue, RAM and CPUs request (thanks to @pcm32). Pull Request 12059

• Allow specifying useful classes of tools for mapping in job conf YAML/XML Pull Request 12258

• Fix galaxy.json dynamic file collection in Pulsar. Pull Request 12267

• Default k8s_unschedulable_walltime_limit to None and allow for unlimited queue wait time (thanks to @nuwang). Pull Request 12317

• Support setting per-job-environment container resolvers using the container_resolvers key in the environment config Pull Request 12350

• Add config options for controlling handler and runner monitor thread sleep. Pull Request 12473

• Make conda_auto_init option overrridable (thanks to @rhpvorderman). Pull Request 12200

• Support setting the container resolvers configuration directly in the Galaxy app config Pull Request 12344

• Improve k8s docker image (thanks to @nuwang). Pull Request 12373

• Fix sorting on disk_usage column in admin panel (thanks to @cat-bro). Pull Request 12469

• Make the subject and body of the mailing list join message configurable Pull Request 12484

• Don’t change panel view after installing repositories, clean up provider Pull Request 12677

• Test configuration for running Selenium tests against beta history panel. Pull Request 10965

• Add negate attribute to validators and tests (thanks to @bernt-matthias). Pull Request 11043

• Allow element_identifiers or a manually specified name for datasets in build list tool (thanks to @bernt-matthias). Pull Request 11309

• Prepare FastAPI route for quotas (thanks to @davelopez). Pull Request 11315

• Create central pydantic models (thanks to @davelopez). Pull Request 11827

• Use python:3.7-slim container instead of ubuntu (thanks to @rhpvorderman). Pull Request 11855

• Add more examples for the file source plugins (thanks to @bgruening). Pull Request 11949

• Migrate Libraries API (top level) to FastAPI (thanks to @davelopez). Pull Request 11983

• Upgraded to v0.9.0 of irods client that supports parallel put/get (thanks to @kxk302). Pull Request 11984

• Improve handling of tags for collection manipulation tools (thanks to @simonbray). Pull Request 11992

• Initial setup for migrating to declarative mapping Pull Request 12042

• Migrate model to declarative mapping Pull Request 12045

• Unify nested collection attribute or instance access Pull Request 12056

• Increase API tests coverage for Data Library GET permissions (thanks to @davelopez). Pull Request 12057

• Tweak PR template to be a bit more flexible and lightweight. Pull Request 12063

• Declarative mappings + tests for all models Pull Request 12064

• Enable pytest class-based tests Pull Request 12072

• Rework variable name to clarify this is a wsgi application. Pull Request 12090

• Upgraded irods client to v1.0.0 (thanks to @kxk302). Pull Request 12101

• Add configuration option to hide user account management interfaces Pull Request 12103

• Fix up some typing redundancy. Pull Request 12108

• Rename dataset_collections_service to dataset_collection_manager. Pull Request 12110

• Allow multiple input datasets in jupyter interactive tool Pull Request 12113

• Change GIE label to interactive-tools Pull Request 12114

• Add FastAPI routes for Library Folders (thanks to @davelopez). Pull Request 12131

• Change icon for “Share or Publish” in new history panel (thanks to @nsoranzo). Pull Request 12143

• Cleanup use of refresh/undo/redo/sync icons (thanks to @nsoranzo). Pull Request 12145

• Unify how the GalaxyInteractorApi handles JSON requests (thanks to @davelopez). Pull Request 12152

• Hide masthead help resources if resource urls are unavailable Pull Request 12198

• Cancel in progress CI on same branch, cache yarn cache Pull Request 12211

• Show target datatype in datatype conversion (thanks to @bernt-matthias). Pull Request 12230

• Add a note to get Python extension and set interpreter (thanks to @eancelet). Pull Request 12234

• Lint for whitespace in tool XML (thanks to @neoformit). Pull Request 12246

• Use relative path in recursive discover_datasets tag Pull Request 12254

• Deprecate data manager version (thanks to @bernt-matthias). Pull Request 12255

• Add linting for tool parameter validators (thanks to @bernt-matthias). Pull Request 12262

• Create a bug-report issue template Pull Request 12265

• Enhance page functionalities in data-library folder (thanks to @OlegZharkov). Pull Request 12270

• Parse edam operation and topic data from bio.tools if available. Pull Request 12291

• Refactor base toolbox code de-coupled from app & config into tool_util. Pull Request 12292

• Vueify Dataset Error Details Page and Form Pull Request 12300

• Implement folder selection in file source upload modal (thanks to @OlegZharkov). Pull Request 12310

• Allow HTML in DatasetStorage view (thanks to @bgruening). Pull Request 12312

• Document the delta attribute of has_size assert in xml schema (thanks to @bernt-matthias). Pull Request 12314

• Accept from_tool_provided_metadata as means to specify the format for discovered datasets in tool linter (thanks to @bernt-matthias). Pull Request 12319

• Add Import Collection Button to Collections embedded in Pages Pull Request 12324

• Allow various configuration parameters to be set per host. Pull Request 12328

• Migrate group_roles endpoints to FastAPI (thanks to @ZimmerA). Pull Request 12337

• Restore Upload dialog in global Galaxy object Pull Request 12339

• Move page export button to title Pull Request 12340

• API test case to ensure model attributes get escaped during tool evaluation Pull Request 12357

• Provide more context in EDAM Tool Panel Pull Request 12365

• Mention collection name and element identifier when test comparison fails (thanks to @bernt-matthias). Pull Request 12376

• Extend per_host configurations to include static directories and files. Pull Request 12379

• Display Tabular datasets as sortable tables, and PDF and HTML in embedded frames in Pages Pull Request 12387

• Create directories when needed for the pyfilesystem export plugins (thanks to @bgruening). Pull Request 12388

• Add Instructions for debugging Galaxy connected to a Slurm cluster in VSCode (thanks to @kxk302). Pull Request 12403

• Don’t allow beta history panel Selenium tests to fail. Pull Request 12409

• Selenium test for EDAM tool panel views. Pull Request 12422

• Spanish Translations for remaining untranslated UI components (thanks to @hexylena). Pull Request 12427

• Improvements to Selenium testing Pull Request 12433

• Update refgenconf (refgenie) to 0.12.0. Requires version 0.4 of confi… Pull Request 12435

• Set default constructor for SA models Pull Request 12438

• FastAPI: add middleware to deal with file downloads (thanks to @davelopez). Pull Request 12441

• Add options to override the history name and reuse histories in the tool test script Pull Request 12466

• Let invalid tool profile trigger linter error (thanks to @bernt-matthias). Pull Request 12501

• Release note draft Pull Request 12567

• Use new sentry-sdk and adapt usage pattern Pull Request 12584

• Add client-side validation to tag editor widget Pull Request 12594

• Refgenie fixes for incompatible configurations Pull Request 12617

• Update conditional psycopg2-binary dependency Pull Request 12633

• Adjust appearance of new user welcome page Pull Request 12639

• Fix ambiguity in remote file upload (thanks to @OlegZharkov). Pull Request 12641

• Set wait instead of not-allowed cursor to indicate tool form loading Pull Request 12681

• Fix missing history or hid for History Dataset Associations Pull Request 12721

• 21.09 Release notes for Users (thanks to @hexylena). Pull Request 12734

• Raise Bad Request when bootstrap admins (master key) try to run jobs/tools (thanks to @davelopez). Pull Request 12793

• Add error state to dataset provider, show error in dataset details page Pull Request 12798

• If datatype is unknown display warning when trying to connect nodes Pull Request 12807

• Refactor Sharing (thanks to @OlegZharkov). Pull Request 11701

• Migrate to SQLAlchemy 1.4 Pull Request 11737

• Vueify Workflow Editor wrappers Pull Request 11898

• Add double quotes to cp for from_work_dir (thanks to @bernt-matthias). Pull Request 11960

• Prettier version update to new release Pull Request 12027

• Vueify Tool Form Wrapper Pull Request 12031

• Normalize Vue mounts in analysis, admin endpoints Pull Request 12040

• Set cache_ok flag for SQLAlchemy custom types Pull Request 12060

• Update SQLAlchemy to 1.4.17 Pull Request 12089

• Update dependency resolver docs and drop sample XML file in favor of direct configuration under the dependency_resolvers key of galaxy.yml Pull Request 12105

• Update SQLAlchemy to 1.4.18 Pull Request 12132

• Refactoring: Remove ExportsHistoryMixin and ImportsHistoryMixin (thanks to @davelopez). Pull Request 12146

• Remove unused legacy controller things Pull Request 12172

• Update SQLAlchmey to 1.4.19 Pull Request 12188

• Refactor Histories API controller (thanks to @davelopez). Pull Request 12195

• Unify molecules datatype converters (thanks to @bernt-matthias). Pull Request 12214

• Vueify Workflow Run form Pull Request 12227

• Update SQLAlchmey to 1.4.20 Pull Request 12229

• Refactor History contents API (thanks to @davelopez). Pull Request 12231

• Improve GitHubSearch class (thanks to @nsoranzo). Pull Request 12276

• Some refactoring of interactive tool handling in k8s (thanks to @nuwang). Pull Request 12285

• Replace form-view imports in Visualizations with Vue component layer Pull Request 12296

• Fix histories content filtering by type (thanks to @davelopez). Pull Request 12303

• Vueify Dataset Edit Attributes Pull Request 12323

• Vueify Generic Form Wrapper Pull Request 12329

• Refactor k8s IT checks to make logic more obvious (thanks to @nuwang). Pull Request 12360

• Fix variable name typo in watchers (thanks to @nuwang). Pull Request 12368

• FastAPI: deprecate url attribute (again) (thanks to @davelopez). Pull Request 12370

• Avoid parsing the entire form model to the form display wrapper Pull Request 12374

• Remove tool_conf.xml.main which is no longer used (thanks to @nuwang). Pull Request 12380

• Removing unused poolsize argument from code and config. (thanks to @kxk302). Pull Request 12381

• FastAPI: support reverse URL lookups (thanks to @davelopez). Pull Request 12391

• Adapt quotas tests to use JSON payload (thanks to @davelopez). Pull Request 12417

• Declarative mapping follow-up: model constructors cleanup Pull Request 12424

• Vuefy show_params.mako (thanks to @OlegZharkov). Pull Request 12432

• Return tool_name only when show_job is full (thanks to @OlegZharkov). Pull Request 12457

• Drop unused models: DeferredJob and TransferJob Pull Request 12461

• Drop bcftools requirement from set_metadata tool Pull Request 12472

• Revert “Install Tempita from a fork due to use_2to3 deprecation” (thanks to @nsoranzo). Pull Request 12504

• FastAPI: explicitly return empty response with 204 status (thanks to @davelopez). Pull Request 12505

• Modernize sorter (sort1) tool Pull Request 12619

• Rephrase and fix typos (thanks to @simonbray). Pull Request 12750

• Add missing tool_ids to workflow invocation failure message (thanks to @simonbray). Pull Request 12823

• Add docker image auto-building in github workflow (thanks to @almahmoud). Pull Request 12520

Fixes

• Fix _get_reference_data method signature Pull Request 12562

• Fix new user welcome plugin build status storage/detection Pull Request 12779

• Fix msa visualization Pull Request 12782

• Fix edta metadata setting (thanks to @bernt-matthias). Pull Request 12273

• Increase specificity of mothur.pair.dist sniffer (thanks to @bernt-matthias). Pull Request 12280

• Small fix in binary.py (thanks to @melibleq). Pull Request 12384

• Fix cmap sniffer (thanks to @astrovsky01). Pull Request 12509

• Add file_ext property to Pretext and others datatypes (thanks to @bernt-matthias). Pull Request 12713

• Make vg a subclass of CompressedArchive (thanks to @bernt-matthias). Pull Request 12718

• Fix typo in interactivetool_jupyter_notebook.xml help section (thanks to @maximskorik). Pull Request 12077

• Update interactivetool_pyiron.xml (thanks to @gmauro). Pull Request 12127

• Fix patterns in Grep1 tool Pull Request 12166

• Restore Grep1 version 1.0.1 Pull Request 12252

• Add switch for optional select in workflow editor Pull Request 12138

• Do not persist tool state when invoking workflow Pull Request 12141

• Fix failure to serialize invocation / drop stored_workflow_id from invocation API Pull Request 12148

• Fix various TRS bugs and add tests Pull Request 12182

• Fix simplified workflow run form config setting Pull Request 12204

• Fix expanding collections in invocation view Pull Request 12216

• Disable text input for unselected inputs Pull Request 12640

• Flush new history before adding items Pull Request 12771

• Swap to galaxy fork of bootstrap-tour Pull Request 12210

• Beta history annotation, title, and tag editor Pull Request 12299

• Fix typo in docs Pull Request 12450

• Handle k8s job creation failures (thanks to @brinkmanlab). Pull Request 11715

• More IT and k8s runner fixes (thanks to @almahmoud). Pull Request 11989

• Unquote globs in from_work_dir ouptuts Pull Request 12049

• Quote extract_dataset_parts.sh call for parallelism mechanism (thanks to @bernt-matthias). Pull Request 12183

• Fix crash when uwsgi + mules has unhandled jobs at startup Pull Request 12215

• Handle metadata explicitly in kubernetes job runner instead of relying on legacy fallback (thanks to @nuwang). Pull Request 12243

• Fix version command when using extended metadata Pull Request 12245

• Fix composite inputs when using Pulsar. Pull Request 12259

• Fix Pulsar dynamic output discovery for various simple tool specified patterns. Pull Request 12260

• Added additional guard conditions in k8s runner to prevent KeyError (thanks to @nuwang). Pull Request 12277

• Fix Pulsar’s ability to read tool provided metadata when path is overridden. Pull Request 12284

• Continue handler startup even if job working directory can’t be recovered Pull Request 12316

• Fix sample job_config file to reflect that tmp_dir can be an expression or the string True (thanks to @nuwang). Pull Request 12361

• Fail data manager job when processing table entry fails Pull Request 12495

• Delay start of job runners Pull Request 12575

• Fix double enqueuing of upload jobs Pull Request 12763

• Use correct path for cgroup metrics when running within containers (thanks to @nuwang). Pull Request 12792

• Fix documentation for ftp_upload_dir and ftp_upload_site setting (thanks to @lldelisle). Pull Request 12164

• Fix non-closing masthead dropdown (thanks to @OlegZharkov). Pull Request 11962

• Update tensorflow to 2.5.0. Pull Request 12026

• Fix query parameter in /api/libraries/{id}/permissions (thanks to @davelopez). Pull Request 12047

• Add/drop index together with job_id column (thanks to @nsoranzo). Pull Request 12050

• Fix pysam.view call (thanks to @bernt-matthias). Pull Request 12061

• Open partfile in rb-mode in multipart uploading (thanks to @bioflowy). Pull Request 12084

• Make markdown components for reports and pages full width (thanks to @hexylena). Pull Request 12085

• Fix history audit table row trigger Pull Request 12130

• Update FastAPI to 0.65.2 and dependencies (thanks to @davelopez). Pull Request 12136

• Fix subworkflow tool state upgrade parsing Pull Request 12139

• Add test cases for collection builder dialogs (thanks to @assuntad23). Pull Request 12154

• Fix remote file upload if Galaxy is served under a prefix (thanks to @almahmoud). Pull Request 12155

• Add timeout to all urlopen and requests.* methods Pull Request 12173

• Allow decompress="true" in test comparison methods Pull Request 12187

• Fix TRS search if search term contains - Pull Request 12196

• Allow leading whitespace in TRS search term Pull Request 12197

• Add closing slash in tool schema documentation for has_size attribute (thanks to @bernt-matthias). Pull Request 12206

• Work around null hid Pull Request 12217

• Assorted fixes to debugging documentation Pull Request 12218

• Don’t let reports auto-create database tables Pull Request 12220

• Small fixes for beta history panel. Pull Request 12228

• Fix fugue pencil on old sharing not showing up correctly. Pull Request 12235

• Fix string formatting bug in test interactor Pull Request 12253

• Added check to install ‘fs.sshfs’ package (thanks to @kjetilkl). Pull Request 12269

• Fix type of page and page_limit in Libraries Folder permissions (thanks to @OlegZharkov). Pull Request 12271

• Improve handling of unexpected values in is_empty_file Pull Request 12275

• Beta history: Dataset Collection API fix for updating tags Pull Request 12286

• Allow scrolling in autocomplete options, fix search word filtering Pull Request 12290

• Add a GDPR-friendly user purge to pgcleanup Pull Request 12293

• Fix admin user manage Pull Request 12295

• Reword history import button text (thanks to @bernt-matthias). Pull Request 12304

• Fix order of dataset instances in dataset collection Pull Request 12305

• Fix recursive file list in posix remote files (thanks to @OlegZharkov). Pull Request 12307

• Linter support for format_source in static collection elements (thanks to @bernt-matthias). Pull Request 12309

• Make authnz end_session_endpoint optional (thanks to @nuwang). Pull Request 12311

• Use workflow step title as defined in the workflow model Pull Request 12320

• Gitlab Error report - Remove previously required urllib (thanks to @selten). Pull Request 12333

• Identify tool by name, owner, toolshed (thanks to @pvanheus). Pull Request 12338

• Fix for empty docker_volumes/singularity_volumes in job config Pull Request 12341

• Fix up plugin_config module modifying configuration dictionaries. Pull Request 12354

• Remove NetworkException catch clauses in iRODS object store (thanks to @kxk302). Pull Request 12363

• Bump tensorflow from 2.5.0 to 2.5.1 in /lib/galaxy/dependencies Pull Request 12378

• Added missing triggers package to galaxy data (thanks to @nuwang). Pull Request 12389

• Fix hids, alignment, other style issues in beta history. Pull Request 12406

• Fixes to selenium testing with beta history panel enabled. Pull Request 12407

• Downgrade Cheetah3 to 3.2.6.post1 (thanks to @nsoranzo). Pull Request 12408

• Install Tempita from a fork due to use_2to3 deprecation (thanks to @nsoranzo). Pull Request 12413

• Fix flaky failing workflow editor selenium test. Pull Request 12423

• Bump sqlparse from 0.4.1 to 0.4.2 in /lib/galaxy/dependencies Pull Request 12436

• Fix keycloak user creation username handling. Pull Request 12444

• Make Role description field optional (thanks to @davelopez). Pull Request 12447

• Drop symlink to tool_conf.xml.main Pull Request 12451

• Fix history contents API update batch with collections (thanks to @davelopez). Pull Request 12456

• Remove default pagination in LibraryPopulator.get_permissions() (thanks to @davelopez). Pull Request 12463

• Drop tool_name from dataset details Pull Request 12465

• Strip whitespace on urls when uploading (thanks to @assuntad23). Pull Request 12474

• Remove default value string from /api/genomes endpoint (thanks to @assuntad23). Pull Request 12481

• Explicitly set page_limit in test_get_library_available_permissions (thanks to @davelopez). Pull Request 12483

• Update dataset edit toggle button to refer to dataset instead of coll… Pull Request 12485

• Handle deleted panel views in the UI. Pull Request 12488

• Fix bug when restarting Galaxy in selenium integration tests. Pull Request 12489

• Remove invalid syntax from tool schema (thanks to @bernt-matthias). Pull Request 12494

• Add PostgreSQL < 9.5 deprecation notice to 21.05 release announce (thanks to @nsoranzo). Pull Request 12496

• Fix indention for admin panel links Pull Request 12497

• Add profile that strips whitespace in from_work_dir outputs Pull Request 12536

• Respect tool version in verify_tool Pull Request 12539

• Catch datatype conversion exception and return proper error Pull Request 12561

• Fix async controller Pull Request 12565

• Fix scratchbook on dataset details pages (thanks to @OlegZharkov). Pull Request 12566

• Drop special-casing of current Galaxy version for news webhook Pull Request 12579

• Fix a small bug in Error summary Vue template. Pull Request 12581

• Avoid uncaught exceptions when trying to set invalid tag names (thanks to @davelopez). Pull Request 12582

• Fix job detail caching Pull Request 12586

• Fix output state handling, disable connectivity for conditionals Pull Request 12591

• Sync reset mapping with Node component map-over state Pull Request 12598

• Remove Interactive Environments from Visualizations Pull Request 12599

• Fix file source restrictions (thanks to @davelopez). Pull Request 12607

• Fix branch for release notes (thanks to @hexylena). Pull Request 12615

• Fix: encode all ids when returning a ldda in datasets API show operation (thanks to @davelopez). Pull Request 12616

• Fix history export link copy Pull Request 12618

• Fix collection replacement and job resuming when re-running single ma… Pull Request 12621

• Allow users to retry tool job submissions if an error occurs Pull Request 12623

• Restore overwritten styles Pull Request 12624

• Allow empty truevalue for conditional test parameters Pull Request 12625

• Dispose previously mounted Vue-components in Analysis router Pull Request 12627

• Fix new user welcome styles Pull Request 12630

• Fix id encoding in datasets API show method (thanks to @nsoranzo). Pull Request 12634

• Add property to disable tool form Pull Request 12645

• Move node update requests to workflow component Pull Request 12648

• Fix directory_uri tool parameter validation error (thanks to @davelopez). Pull Request 12653

• Ensure that tool installations use the default tool panel Pull Request 12655

• Show loading error in tool form Pull Request 12669

• Fix possible None in TokenContainedEvaluator (thanks to @davelopez). Pull Request 12675

• Reduce number of Tool Form requests in Workflow Editor, improve visibility of Tool Infos Pull Request 12702

• Continue deleting dataset collection if member HDA has no history Pull Request 12722

• Fix for PairedListCreator errant autopairing (thanks to @assuntad23). Pull Request 12727

• Various show page PDF bug fixes. Pull Request 12728

• Fix linter: Parameter validator needs no expression (thanks to @bernt-matthias). Pull Request 12733

• Fix chrome scrolling on insert in markdown editor Pull Request 12737

• Two fixes for linting (thanks to @bernt-matthias). Pull Request 12757

• Prefer model class when it exists in grid sorting Pull Request 12758

• Use default alert info instead of custom small info style Pull Request 12764

• Drop legacy_expose_api from api/datasets Pull Request 12795

• Use post instead of put to create copy of dataset collection Pull Request 12796

• Allow sessionless access to genomes API (thanks to @nsoranzo). Pull Request 12799

• Fix wrong dataset details link Pull Request 12805

• Disable library uploads using master API key Pull Request 12806

• Add missing tool_ids to workflow invocation failure message (thanks to @simonbray). Pull Request 12823

• Allow dataset and dataset collection deletion for anonymous users Pull Request 12817

• Fix from_work_dir glob with extended metadata and pulsar Pull Request 12816

• Fix remote object store datasets not purged Pull Request 12815

• Pin a resolution for ua-parser-js to 0.7.30 Pull Request 12827

• Allow sessionless access to some datasets API endpoints (thanks to @nsoranzo). Pull Request 12830