Source code for tool_shed.test.functional.test_1100_install_updated_repository_dependencies

from ..base import common
from ..base.twilltestcase import ShedTwillTestCase

column_repository_name = "column_maker_1087"
column_repository_description = "Add column"
column_repository_long_description = "Compute an expression on every row"

convert_repository_name = "convert_chars_1087"
convert_repository_description = "Convert delimiters"
convert_repository_long_description = "Convert delimiters to tab"

category_name = "Test 1087 Advanced Circular Dependencies"
category_description = "Test circular dependency features"


[docs]class TestRepositoryDependencies(ShedTwillTestCase): """Test installing a repository, then updating it to include repository dependencies.""" requires_galaxy = True
[docs] def test_0000_create_or_login_admin_user(self): """Create necessary user accounts and login as an admin user.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_create_and_populate_column_repository(self): """Create a category for this test suite and add repositories to it.""" category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=column_repository_name, description=column_repository_description, long_description=column_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) if self.repository_is_new(repository): self.commit_tar_to_repository( repository, "column_maker/column_maker.tar", commit_message="Uploaded column_maker tarball.", )
[docs] def test_0010_create_and_populate_convert_repository(self): """Create and populate the convert_chars repository.""" self.login(email=common.admin_email, username=common.admin_username) category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=convert_repository_name, description=convert_repository_description, long_description=convert_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) if self.repository_is_new(repository): self.commit_tar_to_repository( repository, "convert_chars/convert_chars.tar", commit_message="Uploaded convert_chars tarball.", )
[docs] def test_0015_install_and_uninstall_column_repository(self): """Install and uninstall the column_maker repository.""" self._install_repository( column_repository_name, common.test_user_1_name, category_name, install_tool_dependencies=False, install_repository_dependencies=True, new_tool_panel_section_label="column_maker", ) installed_column_repository = self._get_installed_repository_by_name_owner( column_repository_name, common.test_user_1_name ) self._uninstall_repository(installed_column_repository)
[docs] def test_0020_upload_dependency_xml(self): """Upload a repository_dependencies.xml file to column_maker that specifies convert_chars.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) convert_repository = self._get_repository_by_name_and_owner(convert_repository_name, common.test_user_1_name) column_repository = self._get_repository_by_name_and_owner(column_repository_name, common.test_user_1_name) repository_dependencies_path = self.generate_temp_path("test_1085", additional_paths=["column"]) convert_tuple = ( self.url, convert_repository.name, convert_repository.owner, self.get_repository_tip(convert_repository), ) self.create_repository_dependency( repository=column_repository, repository_tuples=[convert_tuple], filepath=repository_dependencies_path )
[docs] def test_0025_verify_repository_dependency(self): """Verify that the new revision of column_maker now depends on convert_chars.""" convert_repository = self._get_repository_by_name_and_owner(convert_repository_name, common.test_user_1_name) column_repository = self._get_repository_by_name_and_owner(column_repository_name, common.test_user_1_name) self.check_repository_dependency(column_repository, convert_repository)
[docs] def test_0030_reinstall_column_repository(self): """Reinstall column_maker and verify it installs repository dependencies.""" strings_not_displayed = ["column_maker_1087"] self._assert_has_no_installed_repos_with_names(*strings_not_displayed) self._install_repository( column_repository_name, common.test_user_1_name, category_name, install_tool_dependencies=False, install_repository_dependencies=True, new_tool_panel_section_label="column_maker", ) self._assert_has_installed_repos_with_names("column_maker_1087", "convert_chars_1087")