import os
from galaxy_test.base.decorators import (
requires_admin,
requires_new_library,
)
from .framework import (
retry_during_transitions,
selenium_test,
SeleniumTestCase,
UsesLibraryAssertions,
)
[docs]class TestLibraryContents(SeleniumTestCase, UsesLibraryAssertions):
run_as_admin = True
[docs] @selenium_test
@requires_admin
@requires_new_library
def test_sub_folder(self):
def change_description(description):
self.components.libraries.folder.edit_folder_btn.wait_for_and_click()
self.components.libraries.folder.input_folder_description.wait_for_visible().clear()
self.components.libraries.folder.input_folder_description.wait_for_and_send_keys(description)
self.components.libraries.folder.save_folder_btn.wait_for_and_click()
sub_folder_name = self._get_random_name(prefix="new_sub_folder")
description = self._get_random_name(prefix="new_sub_folder_description")
long_description = self._get_random_name(prefix="new_sub_folder_description", len=45)
# create mew folder
self.admin_login()
self.navigate_to_new_library()
self.assert_num_displayed_items_is(0)
self.libraries_folder_create(sub_folder_name)
self.assert_num_displayed_items_is(1)
# check empty folder
new_folder_link = self.wait_for_xpath_visible(f'//a[contains(text(), "{sub_folder_name}")]')
new_folder_link.click()
# assert that 'empty folder message' is present
self.components.libraries.folder.empty_folder_message.wait_for_present()
# go one folder up
self.components.libraries.folder.btn_open_parent_folder(folder_name=self.name).wait_for_and_click()
# assert empty description
self.components.libraries.folder.description_field.assert_absent_or_hidden()
# change description
change_description(description)
assert description == self.components.libraries.folder.description_field.wait_for_text()
change_description(long_description)
# assert shrinked description
shrinked_description = long_description[0:40]
assert shrinked_description == self.components.libraries.folder.description_field_shrinked.wait_for_text()
[docs] @selenium_test
@requires_admin
@requires_new_library
def test_import_dataset_from_history(self):
self.admin_login()
self.perform_upload(self.get_filename("1.txt"))
self.wait_for_history()
self.navigate_to_new_library()
self.assert_num_displayed_items_is(0)
self.sleep_for(self.wait_types.UX_RENDER)
self.libraries_dataset_import(self.navigation.libraries.folder.labels.from_history)
# Click the cancel button, make sure modal is hidden.
self.wait_for_visible(self.navigation.libraries.folder.selectors.import_modal)
self.wait_for_and_click(self.navigation.libraries.folder.selectors.import_datasets_cancel_button)
self.wait_for_absent_or_hidden(self.navigation.libraries.folder.selectors.import_modal)
self.libraries_dataset_import(self.navigation.libraries.folder.labels.from_history)
# Need to select the right item on the dropdown
self.sleep_for(self.wait_types.UX_RENDER)
self._select_history_option("Unnamed history")
self.sleep_for(self.wait_types.UX_RENDER)
self.libraries_dataset_import_from_history_select(["1.txt"])
# Add
self.sleep_for(self.wait_types.UX_RENDER)
self.screenshot("libraries_dataset_import")
self.libraries_dataset_import_from_history_click_ok()
self.assert_num_displayed_items_is(1)
[docs] @selenium_test
@requires_admin
@requires_new_library
def download_dataset_from_library(self):
self.test_import_dataset_from_history()
self.components.libraries.folder.select_one.wait_for_and_click()
self.components.libraries.folder.download_button.wait_for_and_click()
self.sleep_for(self.wait_types.UX_RENDER)
folder_files = os.listdir(self.get_download_path())
expected_filename = "selected_dataset_files.zip"
assert expected_filename in folder_files
[docs] @selenium_test
@requires_admin
@requires_new_library
def test_delete_dataset(self):
self.test_import_dataset_from_history()
self.sleep_for(self.wait_types.UX_RENDER)
# assert "you must select at least one" modal
# assert self.components.libraries.folder.toast_msg.is_displayed
self.components.libraries.folder.delete_btn.wait_for_and_click()
self.components.libraries.folder.select_one.wait_for_and_click()
self.sleep_for(self.wait_types.UX_RENDER)
self.components.libraries.folder.delete_btn.wait_for_and_click()
self.sleep_for(self.wait_types.UX_RENDER)
self.assert_num_displayed_items_is(0)
# Fine test locally but the upload doesn't work in Docker compose. I'd think
# Galaxy must be running so that test-data/1.txt would work but it just doesn't
# for some reason. https://jenkins.galaxyproject.org/job/jmchilton-selenium/79/artifact/79-test-errors/test_import_dataset_from_path2017100413221507137721/
[docs] @selenium_test
@requires_admin
@requires_new_library
def test_import_dataset_from_path(self):
self.admin_login()
self.navigate_to_new_library()
self.assert_num_displayed_items_is(0)
self.sleep_for(self.wait_types.UX_RENDER)
# Click the cancel button, make sure modal is hidden.
self.libraries_dataset_import(self.navigation.libraries.folder.labels.from_path)
self.wait_for_visible(self.navigation.libraries.folder.selectors.import_modal)
self.wait_for_and_click(self.navigation.libraries.folder.selectors.import_datasets_cancel_button)
self.wait_for_absent_or_hidden(self.navigation.libraries.folder.selectors.import_modal)
# Try again... this time actually select some paths.
self.libraries_dataset_import(self.navigation.libraries.folder.labels.from_path)
textarea = self.wait_for_and_click(self.navigation.libraries.folder.selectors.import_from_path_textarea)
textarea.send_keys("test-data/1.txt")
self.sleep_for(self.wait_types.UX_RENDER)
self.wait_for_and_click(self.navigation.libraries.folder.selectors.import_datasets_ok_button)
# Let the progress bar disappear...
self.wait_for_absent_or_hidden(self.navigation.libraries.folder.selectors.import_progress_bar)
self.assert_num_displayed_items_is(1)
self.click_label("1.txt")
self.wait_for_visible(self.navigation.libraries.dataset.selectors.table)
elements = self.find_elements(self.navigation.libraries.dataset.selectors.table_rows)
table_as_dict = {}
for element in elements:
row_values = element.text.split("\n")
key = row_values[0]
value = row_values[1]
table_as_dict[key] = value
assert table_as_dict["Name"] == "1.txt", table_as_dict
assert table_as_dict["Genome build"] == "?", table_as_dict
[docs] @selenium_test
@requires_admin
@requires_new_library
def test_import_dataset_from_import_dir(self):
self.admin_login()
self.navigate_to_new_library()
self.assert_num_displayed_items_is(0)
filenames = ["1.axt", "1.bed", "1.bam"]
self.populate_library_folder_from_import_dir(self.name, filenames)
self.assert_num_displayed_items_is(len(filenames))
[docs] @selenium_test
@requires_admin
@requires_new_library
def test_show_details(self):
self.admin_login()
self.navigate_to_new_library()
self.sleep_for(self.wait_types.UX_RENDER)
self.components.libraries.folder.open_location_details_btn.wait_for_and_click()
self.sleep_for(self.wait_types.UX_RENDER)
self.components.libraries.folder.location_details_ok_btn.wait_for_and_click()
self.screenshot("libraries_show_details")
self.wait_for_overlays_cleared()
self.screenshot("libraries_show_details_done")
@retry_during_transitions
def _select_history_option(self, label_text):
select = self.components.libraries.folder.add_history_items.wait_for_select()
select.select_by_visible_text(label_text)