Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

_

A

B

C

D

E

F

G

  • ga_refresh() (in module tool_shed.test.base.test_db_util)
  • GAFASQLite (class in galaxy.datatypes.binary)
  • Gal (class in galaxy.datatypes.microarrays)
  • galactic_job_json() (in module galaxy.tool_util.cwl.util)
  • galaxy
  • galaxy (galaxy.web.framework.middleware.batch.BatchMiddleware attribute)
  • galaxy.actions
  • galaxy.actions.library
  • galaxy.app
  • galaxy.app_unittest_utils
  • galaxy.app_unittest_utils.celery_helper
  • galaxy.app_unittest_utils.galaxy_mock
  • galaxy.app_unittest_utils.tools_support
  • galaxy.auth
  • galaxy.auth.providers
  • galaxy.auth.providers.alwaysreject
  • galaxy.auth.providers.ldap_ad
  • galaxy.auth.providers.localdb
  • galaxy.auth.providers.pam_auth
  • galaxy.auth.util
  • galaxy.authnz
  • galaxy.authnz.custos_authnz
  • galaxy.authnz.managers
  • galaxy.authnz.psa_authnz
  • galaxy.celery
  • galaxy.celery.tasks
  • galaxy.config
  • galaxy.config.config_manage
  • galaxy.config.schema
  • galaxy.config.script
  • galaxy.config_watchers
  • galaxy.containers
  • galaxy.containers.docker
  • galaxy.containers.docker_decorators
  • galaxy.containers.docker_model
  • galaxy.containers.docker_swarm
  • galaxy.datatypes
  • galaxy.datatypes.annotation
  • galaxy.datatypes.anvio
  • galaxy.datatypes.assembly
  • galaxy.datatypes.binary
  • galaxy.datatypes.blast
  • galaxy.datatypes.checkers
  • galaxy.datatypes.chrominfo
  • galaxy.datatypes.constructive_solid_geometry
  • galaxy.datatypes.converters
  • galaxy.datatypes.converters.bed_to_gff_converter
  • galaxy.datatypes.converters.bgzip
  • galaxy.datatypes.converters.cram_to_bam
  • galaxy.datatypes.converters.fasta_to_len
  • galaxy.datatypes.converters.fasta_to_tabular_converter
  • galaxy.datatypes.converters.fastq_to_fqtoc
  • galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
  • galaxy.datatypes.converters.fastqsolexa_to_qual_converter
  • galaxy.datatypes.converters.gff_to_bed_converter
  • galaxy.datatypes.converters.gff_to_interval_index_converter
  • galaxy.datatypes.converters.interval_to_bed_converter
  • galaxy.datatypes.converters.interval_to_bedstrict_converter
  • galaxy.datatypes.converters.interval_to_fli
  • galaxy.datatypes.converters.interval_to_interval_index_converter
  • galaxy.datatypes.converters.interval_to_tabix_converter
  • galaxy.datatypes.converters.lped_to_fped_converter
  • galaxy.datatypes.converters.lped_to_pbed_converter
  • galaxy.datatypes.converters.maf_to_fasta_converter
  • galaxy.datatypes.converters.maf_to_interval_converter
  • galaxy.datatypes.converters.parquet_to_csv_converter
  • galaxy.datatypes.converters.pbed_ldreduced_converter
  • galaxy.datatypes.converters.pbed_to_lped_converter
  • galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
  • galaxy.datatypes.converters.pileup_to_interval_index_converter
  • galaxy.datatypes.converters.ref_to_seq_taxonomy_converter
  • galaxy.datatypes.converters.tabular_csv
  • galaxy.datatypes.converters.tabular_to_dbnsfp
  • galaxy.datatypes.converters.vcf_to_interval_index_converter
  • galaxy.datatypes.converters.vcf_to_vcf_bgzip
  • galaxy.datatypes.converters.wiggle_to_simple_converter
  • galaxy.datatypes.coverage
  • galaxy.datatypes.data
  • galaxy.datatypes.dataproviders
  • galaxy.datatypes.dataproviders.base
  • galaxy.datatypes.dataproviders.chunk
  • galaxy.datatypes.dataproviders.column
  • galaxy.datatypes.dataproviders.dataset
  • galaxy.datatypes.dataproviders.decorators
  • galaxy.datatypes.dataproviders.exceptions
  • galaxy.datatypes.dataproviders.external
  • galaxy.datatypes.dataproviders.hierarchy
  • galaxy.datatypes.dataproviders.line
  • galaxy.datatypes.display_applications
  • galaxy.datatypes.display_applications.application
  • galaxy.datatypes.display_applications.parameters
  • galaxy.datatypes.display_applications.util
  • galaxy.datatypes.flow
  • galaxy.datatypes.genetics
  • galaxy.datatypes.gis
  • galaxy.datatypes.goldenpath
  • galaxy.datatypes.graph
  • galaxy.datatypes.hdf5
  • galaxy.datatypes.images
  • galaxy.datatypes.interval
  • galaxy.datatypes.isa
  • galaxy.datatypes.media
  • galaxy.datatypes.metacyto
  • galaxy.datatypes.metadata
  • galaxy.datatypes.microarrays
  • galaxy.datatypes.molecules
  • galaxy.datatypes.mothur
  • galaxy.datatypes.msa
  • galaxy.datatypes.neo4j
  • galaxy.datatypes.ngsindex
  • galaxy.datatypes.phylip
  • galaxy.datatypes.plant_tribes
  • galaxy.datatypes.proteomics
  • galaxy.datatypes.qualityscore
  • galaxy.datatypes.registry
  • galaxy.datatypes.sequence
  • galaxy.datatypes.sniff
  • galaxy.datatypes.spaln
  • galaxy.datatypes.speech
  • galaxy.datatypes.tabular
  • galaxy.datatypes.text
  • galaxy.datatypes.tracks
  • galaxy.datatypes.triples
  • galaxy.datatypes.upload_util
  • galaxy.datatypes.util
  • galaxy.datatypes.util.generic_util
  • galaxy.datatypes.util.gff_util
  • galaxy.datatypes.util.maf_utilities
  • galaxy.datatypes.xml
  • galaxy.dependencies
  • galaxy.di
  • galaxy.exceptions
  • galaxy.exceptions.error_codes
  • galaxy.files
  • galaxy.files.sources
  • galaxy.files.sources.anvil
  • galaxy.files.sources.basespace
  • galaxy.files.sources.dropbox
  • galaxy.files.sources.ftp
  • galaxy.files.sources.galaxy
  • galaxy.files.sources.googlecloudstorage
  • galaxy.files.sources.googledrive
  • galaxy.files.sources.onedata
  • galaxy.files.sources.posix
  • galaxy.files.sources.s3
  • galaxy.files.sources.s3fs
  • galaxy.files.sources.ssh
  • galaxy.files.sources.webdav
  • galaxy.files.unittest_utils
  • galaxy.forms
  • galaxy.forms.forms
  • galaxy.job_execution
  • galaxy.job_execution.actions
  • galaxy.job_execution.actions.post
  • galaxy.job_execution.compute_environment
  • galaxy.job_execution.datasets
  • galaxy.job_execution.output_collect
  • galaxy.job_execution.ports
  • galaxy.job_execution.ports.view
  • galaxy.job_execution.setup
  • galaxy.job_metrics
  • galaxy.job_metrics.collectl
  • galaxy.job_metrics.collectl.cli
  • galaxy.job_metrics.collectl.processes
  • galaxy.job_metrics.collectl.stats
  • galaxy.job_metrics.collectl.subsystems
  • galaxy.job_metrics.formatting
  • galaxy.job_metrics.instrumenters
  • galaxy.job_metrics.instrumenters.cgroup
  • galaxy.job_metrics.instrumenters.collectl
  • galaxy.job_metrics.instrumenters.core
  • galaxy.job_metrics.instrumenters.cpuinfo
  • galaxy.job_metrics.instrumenters.env
  • galaxy.job_metrics.instrumenters.hostname
  • galaxy.job_metrics.instrumenters.meminfo
  • galaxy.job_metrics.instrumenters.uname
  • galaxy.jobs
  • galaxy.jobs.command_factory
  • galaxy.jobs.dynamic_tool_destination
  • galaxy.jobs.handler
  • galaxy.jobs.manager
  • galaxy.jobs.mapper
  • galaxy.jobs.rule_helper
  • galaxy.jobs.rules
  • galaxy.jobs.runners
  • galaxy.jobs.runners.chronos
  • galaxy.jobs.runners.cli
  • galaxy.jobs.runners.condor
  • galaxy.jobs.runners.drmaa
  • galaxy.jobs.runners.godocker
  • galaxy.jobs.runners.kubernetes
  • galaxy.jobs.runners.local
  • galaxy.jobs.runners.pbs
  • galaxy.jobs.runners.pulsar
  • galaxy.jobs.runners.slurm
  • galaxy.jobs.runners.state_handler_factory
  • galaxy.jobs.runners.state_handlers
  • galaxy.jobs.runners.state_handlers.resubmit
  • galaxy.jobs.runners.tasks
  • galaxy.jobs.runners.univa
  • galaxy.jobs.runners.util
  • galaxy.jobs.runners.util.cli
  • galaxy.jobs.runners.util.cli.factory
  • galaxy.jobs.runners.util.cli.job
  • galaxy.jobs.runners.util.cli.job.lsf
  • galaxy.jobs.runners.util.cli.job.pbs
  • galaxy.jobs.runners.util.cli.job.slurm
  • galaxy.jobs.runners.util.cli.job.slurm_torque
  • galaxy.jobs.runners.util.cli.job.torque
  • galaxy.jobs.runners.util.cli.shell
  • galaxy.jobs.runners.util.cli.shell.local
  • galaxy.jobs.runners.util.cli.shell.rsh
  • galaxy.jobs.runners.util.condor
  • galaxy.jobs.runners.util.env
  • galaxy.jobs.runners.util.external
  • galaxy.jobs.runners.util.job_script
  • galaxy.jobs.runners.util.kill
  • galaxy.jobs.runners.util.process_groups
  • galaxy.jobs.runners.util.pykube_util
  • galaxy.jobs.runners.util.sudo
  • galaxy.jobs.splitters
  • galaxy.jobs.splitters.basic
  • galaxy.jobs.splitters.multi
  • galaxy.jobs.stock_rules
  • galaxy.main
  • galaxy.main_config
  • galaxy.managers
  • galaxy.managers.annotatable
  • galaxy.managers.api_keys
  • galaxy.managers.base
  • galaxy.managers.citations
  • galaxy.managers.cloud
  • galaxy.managers.cloudauthzs
  • galaxy.managers.collections
  • galaxy.managers.collections_util
  • galaxy.managers.configuration
  • galaxy.managers.context
  • galaxy.managers.datasets
  • galaxy.managers.datatypes
  • galaxy.managers.deletable
  • galaxy.managers.display_applications
  • galaxy.managers.executables
  • galaxy.managers.folders
  • galaxy.managers.genomes
  • galaxy.managers.group_roles
  • galaxy.managers.group_users
  • galaxy.managers.groups
  • galaxy.managers.hdas
  • galaxy.managers.hdcas
  • galaxy.managers.histories
  • galaxy.managers.history_contents
  • galaxy.managers.interactivetool
  • galaxy.managers.jobs
  • galaxy.managers.lddas
  • galaxy.managers.libraries
  • galaxy.managers.library_datasets
  • galaxy.managers.licenses
  • galaxy.managers.markdown_parse
  • galaxy.managers.markdown_util
  • galaxy.managers.metrics
  • galaxy.managers.pages
  • galaxy.managers.quotas
  • galaxy.managers.ratable
  • galaxy.managers.rbac_secured
  • galaxy.managers.remote_files
  • galaxy.managers.roles
  • galaxy.managers.secured
  • galaxy.managers.session
  • galaxy.managers.sharable
  • galaxy.managers.taggable
  • galaxy.managers.tags
  • galaxy.managers.tool_data
  • galaxy.managers.tools
  • galaxy.managers.users
  • galaxy.managers.visualizations
  • galaxy.managers.workflows
  • galaxy.metadata
  • galaxy.metadata.set_metadata
  • galaxy.model
  • galaxy.model.base
  • galaxy.model.custom_types
  • galaxy.model.database_heartbeat
  • galaxy.model.database_utils
  • galaxy.model.dataset_collections
  • galaxy.model.dataset_collections.builder
  • galaxy.model.dataset_collections.matching
  • galaxy.model.dataset_collections.registry
  • galaxy.model.dataset_collections.structure
  • galaxy.model.dataset_collections.subcollections
  • galaxy.model.dataset_collections.type_description
  • galaxy.model.dataset_collections.types
  • galaxy.model.dataset_collections.types.list
  • galaxy.model.dataset_collections.types.paired
  • galaxy.model.item_attrs
  • galaxy.model.mapping
  • galaxy.model.metadata
  • galaxy.model.migrate
  • galaxy.model.migrate.check
  • galaxy.model.migrate.triggers
  • galaxy.model.migrate.triggers.history_update_time_field
  • galaxy.model.migrate.triggers.update_audit_table
  • galaxy.model.migrate.versions
  • galaxy.model.migrate.versions.0001_initial_tables
  • galaxy.model.migrate.versions.0002_metadata_file_table
  • galaxy.model.migrate.versions.0003_security_and_libraries
  • galaxy.model.migrate.versions.0004_indexes_and_defaults
  • galaxy.model.migrate.versions.0005_cleanup_datasets_fix
  • galaxy.model.migrate.versions.0006_change_qual_datatype
  • galaxy.model.migrate.versions.0007_sharing_histories
  • galaxy.model.migrate.versions.0008_galaxy_forms
  • galaxy.model.migrate.versions.0009_request_table
  • galaxy.model.migrate.versions.0010_hda_display_at_authz_table
  • galaxy.model.migrate.versions.0011_v0010_mysql_index_fix
  • galaxy.model.migrate.versions.0012_user_address
  • galaxy.model.migrate.versions.0013_change_lib_item_templates_to_forms
  • galaxy.model.migrate.versions.0014_pages
  • galaxy.model.migrate.versions.0015_tagging
  • galaxy.model.migrate.versions.0016_v0015_mysql_index_fix
  • galaxy.model.migrate.versions.0017_library_item_indexes
  • galaxy.model.migrate.versions.0018_ordered_tags_and_page_tags
  • galaxy.model.migrate.versions.0019_request_library_folder
  • galaxy.model.migrate.versions.0020_library_upload_job
  • galaxy.model.migrate.versions.0021_user_prefs
  • galaxy.model.migrate.versions.0022_visualization_tables
  • galaxy.model.migrate.versions.0023_page_published_and_deleted_columns
  • galaxy.model.migrate.versions.0024_page_slug_unique_constraint
  • galaxy.model.migrate.versions.0025_user_info
  • galaxy.model.migrate.versions.0026_cloud_tables
  • galaxy.model.migrate.versions.0027_request_events
  • galaxy.model.migrate.versions.0028_external_metadata_file_override
  • galaxy.model.migrate.versions.0029_user_actions
  • galaxy.model.migrate.versions.0030_history_slug_column
  • galaxy.model.migrate.versions.0031_community_and_workflow_tags
  • galaxy.model.migrate.versions.0032_stored_workflow_slug_column
  • galaxy.model.migrate.versions.0033_published_cols_for_histories_and_workflows
  • galaxy.model.migrate.versions.0034_page_user_share_association
  • galaxy.model.migrate.versions.0035_item_annotations_and_workflow_step_tags
  • galaxy.model.migrate.versions.0036_add_deleted_column_to_library_template_assoc_tables
  • galaxy.model.migrate.versions.0037_samples_library
  • galaxy.model.migrate.versions.0038_add_inheritable_column_to_library_template_assoc_tables
  • galaxy.model.migrate.versions.0039_add_synopsis_column_to_library_table
  • galaxy.model.migrate.versions.0040_page_annotations
  • galaxy.model.migrate.versions.0041_workflow_invocation
  • galaxy.model.migrate.versions.0042_workflow_invocation_fix
  • galaxy.model.migrate.versions.0043_visualization_sharing_tagging_annotating
  • galaxy.model.migrate.versions.0044_add_notify_column_to_request_table
  • galaxy.model.migrate.versions.0045_request_type_permissions_table
  • galaxy.model.migrate.versions.0046_post_job_actions
  • galaxy.model.migrate.versions.0047_job_table_user_id_column
  • galaxy.model.migrate.versions.0048_dataset_instance_state_column
  • galaxy.model.migrate.versions.0049_api_keys_table
  • galaxy.model.migrate.versions.0050_drop_cloud_tables
  • galaxy.model.migrate.versions.0051_imported_col_for_jobs_table
  • galaxy.model.migrate.versions.0052_sample_dataset_table
  • galaxy.model.migrate.versions.0053_item_ratings
  • galaxy.model.migrate.versions.0054_visualization_dbkey
  • galaxy.model.migrate.versions.0055_add_pja_assoc_for_jobs
  • galaxy.model.migrate.versions.0056_workflow_outputs
  • galaxy.model.migrate.versions.0057_request_notify
  • galaxy.model.migrate.versions.0058_history_import_export
  • galaxy.model.migrate.versions.0059_sample_dataset_file_path
  • galaxy.model.migrate.versions.0060_history_archive_import
  • galaxy.model.migrate.versions.0061_tasks
  • galaxy.model.migrate.versions.0062_user_openid_table
  • galaxy.model.migrate.versions.0063_sequencer_table
  • galaxy.model.migrate.versions.0064_add_run_and_sample_run_association_tables
  • galaxy.model.migrate.versions.0065_add_name_to_form_fields_and_values
  • galaxy.model.migrate.versions.0066_deferred_job_and_transfer_job_tables
  • galaxy.model.migrate.versions.0067_populate_sequencer_table
  • galaxy.model.migrate.versions.0068_rename_sequencer_to_external_services
  • galaxy.model.migrate.versions.0069_rename_sequencer_form_type
  • galaxy.model.migrate.versions.0070_add_info_column_to_deferred_job_table
  • galaxy.model.migrate.versions.0071_add_history_and_workflow_to_sample
  • galaxy.model.migrate.versions.0072_add_pid_and_socket_columns_to_transfer_job_table
  • galaxy.model.migrate.versions.0073_add_ldda_to_implicit_conversion_table
  • galaxy.model.migrate.versions.0074_add_purged_column_to_library_dataset_table
  • galaxy.model.migrate.versions.0075_add_subindex_column_to_run_table
  • galaxy.model.migrate.versions.0076_fix_form_values_data_corruption
  • galaxy.model.migrate.versions.0077_create_tool_tag_association_table
  • galaxy.model.migrate.versions.0078_add_columns_for_disk_usage_accounting
  • galaxy.model.migrate.versions.0079_input_library_to_job_table
  • galaxy.model.migrate.versions.0080_quota_tables
  • galaxy.model.migrate.versions.0081_add_tool_version_to_hda_ldda
  • galaxy.model.migrate.versions.0082_add_tool_shed_repository_table
  • galaxy.model.migrate.versions.0083_add_prepare_files_to_task
  • galaxy.model.migrate.versions.0084_add_ldda_id_to_implicit_conversion_table
  • galaxy.model.migrate.versions.0085_add_task_info
  • galaxy.model.migrate.versions.0086_add_tool_shed_repository_table_columns
  • galaxy.model.migrate.versions.0087_tool_id_guid_map_table
  • galaxy.model.migrate.versions.0088_add_installed_changeset_revison_column
  • galaxy.model.migrate.versions.0089_add_object_store_id_columns
  • galaxy.model.migrate.versions.0090_add_tool_shed_repository_table_columns
  • galaxy.model.migrate.versions.0091_add_tool_version_tables
  • galaxy.model.migrate.versions.0092_add_migrate_tools_table
  • galaxy.model.migrate.versions.0093_add_job_params_col
  • galaxy.model.migrate.versions.0094_add_job_handler_col
  • galaxy.model.migrate.versions.0095_hda_subsets
  • galaxy.model.migrate.versions.0096_openid_provider
  • galaxy.model.migrate.versions.0097_add_ctx_rev_column
  • galaxy.model.migrate.versions.0098_genome_index_tool_data_table
  • galaxy.model.migrate.versions.0099_add_tool_dependency_table
  • galaxy.model.migrate.versions.0100_alter_tool_dependency_table_version_column
  • galaxy.model.migrate.versions.0101_drop_installed_changeset_revision_column
  • galaxy.model.migrate.versions.0102_add_tool_dependency_status_columns
  • galaxy.model.migrate.versions.0103_add_tool_shed_repository_status_columns
  • galaxy.model.migrate.versions.0104_update_genome_downloader_job_parameters
  • galaxy.model.migrate.versions.0105_add_cleanup_event_table
  • galaxy.model.migrate.versions.0106_add_missing_indexes
  • galaxy.model.migrate.versions.0107_add_exit_code_to_job_and_task
  • galaxy.model.migrate.versions.0108_add_extended_metadata
  • galaxy.model.migrate.versions.0109_add_repository_dependency_tables
  • galaxy.model.migrate.versions.0110_add_dataset_uuid
  • galaxy.model.migrate.versions.0111_add_job_destinations
  • galaxy.model.migrate.versions.0112_add_data_manager_history_association_and_data_manager_job_association_tables
  • galaxy.model.migrate.versions.0113_update_migrate_tools_table
  • galaxy.model.migrate.versions.0114_update_migrate_tools_table_again
  • galaxy.model.migrate.versions.0115_longer_user_password_field
  • galaxy.model.migrate.versions.0116_drop_update_available_col_add_tool_shed_status_col
  • galaxy.model.migrate.versions.0117_add_user_activation
  • galaxy.model.migrate.versions.0118_add_hda_extended_metadata
  • galaxy.model.migrate.versions.0119_job_metrics
  • galaxy.model.migrate.versions.0120_dataset_collections
  • galaxy.model.migrate.versions.0121_workflow_uuids
  • galaxy.model.migrate.versions.0122_grow_mysql_blobs
  • galaxy.model.migrate.versions.0123_add_workflow_request_tables
  • galaxy.model.migrate.versions.0124_job_state_history
  • galaxy.model.migrate.versions.0125_workflow_step_tracking
  • galaxy.model.migrate.versions.0126_password_reset
  • galaxy.model.migrate.versions.0127_output_collection_adjustments
  • galaxy.model.migrate.versions.0128_session_timeout
  • galaxy.model.migrate.versions.0129_job_external_output_metadata_validity
  • galaxy.model.migrate.versions.0130_change_pref_datatype
  • galaxy.model.migrate.versions.0131_subworkflow_and_input_parameter_modules
  • galaxy.model.migrate.versions.0132_add_lastpasswordchange_to_user
  • galaxy.model.migrate.versions.0133_add_dependency_column_to_job
  • galaxy.model.migrate.versions.0134_hda_set_deleted_if_purged
  • galaxy.model.migrate.versions.0135_add_library_tags
  • galaxy.model.migrate.versions.0136_collection_and_workflow_state
  • galaxy.model.migrate.versions.0137_add_copied_from_job_id_column
  • galaxy.model.migrate.versions.0138_add_hda_version
  • galaxy.model.migrate.versions.0139_add_history_dataset_association_history_table
  • galaxy.model.migrate.versions.0140_add_dataset_version_to_job_to_input_dataset_association_table
  • galaxy.model.migrate.versions.0141_add_oidc_tables
  • galaxy.model.migrate.versions.0142_change_numeric_metric_precision
  • galaxy.model.migrate.versions.0143_add_cloudauthz_tables
  • galaxy.model.migrate.versions.0144_add_cleanup_event_user_table
  • galaxy.model.migrate.versions.0145_add_workflow_step_input
  • galaxy.model.migrate.versions.0146_workflow_paths
  • galaxy.model.migrate.versions.0147_job_messages
  • galaxy.model.migrate.versions.0148_add_checksum_table
  • galaxy.model.migrate.versions.0149_dynamic_tools
  • galaxy.model.migrate.versions.0150_add_create_time_field_for_cloudauthz
  • galaxy.model.migrate.versions.0151_add_worker_process
  • galaxy.model.migrate.versions.0152_add_metadata_file_uuid
  • galaxy.model.migrate.versions.0153_add_custos_authnz_token_table
  • galaxy.model.migrate.versions.0154_created_from_basename
  • galaxy.model.migrate.versions.0155_job_galaxy_version
  • galaxy.model.migrate.versions.0156_add_interactivetools
  • galaxy.model.migrate.versions.0157_rework_dataset_validation
  • galaxy.model.migrate.versions.0158_workflow_reports
  • galaxy.model.migrate.versions.0159_add_job_external_id_index
  • galaxy.model.migrate.versions.0160_hda_set_deleted_if_purged_again
  • galaxy.model.migrate.versions.0161_add_workflow_invocation_output_table
  • galaxy.model.migrate.versions.0162_job_only_pjas
  • galaxy.model.migrate.versions.0163_worker_process_pid
  • galaxy.model.migrate.versions.0164_page_format
  • galaxy.model.migrate.versions.0165_add_content_update_time
  • galaxy.model.migrate.versions.0166_job_state_summary_view
  • galaxy.model.migrate.versions.0167_add_job_to_input_dataset_collection_element_association
  • galaxy.model.migrate.versions.0168_stored_workflow_hidden_col
  • galaxy.model.migrate.versions.0169_add_missing_indexes
  • galaxy.model.migrate.versions.0170_add_more_missing_indexes
  • galaxy.model.migrate.versions.0171_schemaorg_metadata
  • galaxy.model.migrate.versions.0172_it_entrypoint_requires_domain
  • galaxy.model.migrate.versions.0173_add_job_id_to_dataset
  • galaxy.model.migrate.versions.0174_readd_update_time_triggers
  • galaxy.model.migrate.versions.0175_history_audit
  • galaxy.model.migrate.versions.0176_add_indexes_on_update_time
  • galaxy.model.migrate.versions.0177_update_job_state_summary
  • galaxy.model.migrate.versions.0178_drop_deferredjob_table
  • galaxy.model.migrate.versions.0179_drop_transferjob_table
  • galaxy.model.migrate.versions.0180_add_vault_table
  • galaxy.model.migrate.versions.util
  • galaxy.model.none_like
  • galaxy.model.orm
  • galaxy.model.orm.engine_factory
  • galaxy.model.orm.now
  • galaxy.model.orm.scripts
  • galaxy.model.scoped_session
  • galaxy.model.search
  • galaxy.model.security
  • galaxy.model.store
  • galaxy.model.store.build_objects
  • galaxy.model.store.discover
  • galaxy.model.tags
  • galaxy.model.tool_shed_install
  • galaxy.model.tool_shed_install.mapping
  • galaxy.model.tool_shed_install.migrate
  • galaxy.model.tool_shed_install.migrate.check
  • galaxy.model.tool_shed_install.migrate.versions
  • galaxy.model.tool_shed_install.migrate.versions.0001_add_tool_shed_repository_table
  • galaxy.model.tool_shed_install.migrate.versions.0002_add_tool_shed_repository_table_columns
  • galaxy.model.tool_shed_install.migrate.versions.0003_tool_id_guid_map_table
  • galaxy.model.tool_shed_install.migrate.versions.0004_add_installed_changeset_revison_column
  • galaxy.model.tool_shed_install.migrate.versions.0005_add_tool_shed_repository_table_columns
  • galaxy.model.tool_shed_install.migrate.versions.0006_add_tool_version_tables
  • galaxy.model.tool_shed_install.migrate.versions.0007_add_migrate_tools_table
  • galaxy.model.tool_shed_install.migrate.versions.0008_add_ctx_rev_column
  • galaxy.model.tool_shed_install.migrate.versions.0009_add_tool_dependency_table
  • galaxy.model.tool_shed_install.migrate.versions.0010_alter_tool_dependency_table_version_column
  • galaxy.model.tool_shed_install.migrate.versions.0011_drop_installed_changeset_revision_column
  • galaxy.model.tool_shed_install.migrate.versions.0012_add_tool_dependency_status_columns
  • galaxy.model.tool_shed_install.migrate.versions.0013_add_tool_shed_repository_status_columns
  • galaxy.model.tool_shed_install.migrate.versions.0014_add_repository_dependency_tables
  • galaxy.model.tool_shed_install.migrate.versions.0015_update_migrate_tools_table
  • galaxy.model.tool_shed_install.migrate.versions.0016_update_migrate_tools_table_again
  • galaxy.model.tool_shed_install.migrate.versions.0017_drop_update_available_col_add_tool_shed_status_col
  • galaxy.model.unittest_utils
  • galaxy.model.unittest_utils.data_app
  • galaxy.model.view
  • galaxy.model.view.utils
  • galaxy.objectstore
  • galaxy.objectstore.azure_blob
  • galaxy.objectstore.cloud
  • galaxy.objectstore.irods
  • galaxy.objectstore.pithos
  • galaxy.objectstore.pulsar
  • galaxy.objectstore.s3
  • galaxy.objectstore.s3_multipart_upload
  • galaxy.objectstore.unittest_utils
  • galaxy.queue_worker
  • galaxy.queues
  • galaxy.quota
  • galaxy.schema
  • galaxy.schema.fields
  • galaxy.schema.remote_files
  • galaxy.schema.schema
  • galaxy.schema.types
  • galaxy.security
  • galaxy.security.idencoding
  • galaxy.security.object_wrapper
  • galaxy.security.passwords
  • galaxy.security.ssh_util
  • galaxy.security.validate_user_input
  • galaxy.security.vault
  • galaxy.selenium
  • galaxy.selenium.cli
  • galaxy.selenium.components
  • galaxy.selenium.context
  • galaxy.selenium.data
  • galaxy.selenium.driver_factory
  • galaxy.selenium.has_driver
  • galaxy.selenium.jupyter_context
  • galaxy.selenium.navigates_galaxy
  • galaxy.selenium.scripts
  • galaxy.selenium.scripts.dump_tour
  • galaxy.selenium.sizzle
  • galaxy.selenium.smart_components
  • galaxy.selenium.toolbox
  • galaxy.selenium.toolbox.filters
  • galaxy.structured_app
  • galaxy.tool_shed
  • galaxy.tool_shed.galaxy_install
  • galaxy.tool_shed.galaxy_install.datatypes
  • galaxy.tool_shed.galaxy_install.datatypes.custom_datatype_manager
  • galaxy.tool_shed.galaxy_install.install_manager
  • galaxy.tool_shed.galaxy_install.installed_repository_manager
  • galaxy.tool_shed.galaxy_install.metadata
  • galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager
  • galaxy.tool_shed.galaxy_install.repository_dependencies
  • galaxy.tool_shed.galaxy_install.repository_dependencies.repository_dependency_manager
  • galaxy.tool_shed.galaxy_install.tool_dependencies
  • galaxy.tool_shed.galaxy_install.tool_dependencies.env_manager
  • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe
  • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.asynchronous_reader
  • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.env_file_builder
  • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.install_environment
  • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.recipe_manager
  • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.step_handler
  • galaxy.tool_shed.galaxy_install.tool_dependencies.recipe.tag_handler
  • galaxy.tool_shed.galaxy_install.tools
  • galaxy.tool_shed.galaxy_install.tools.data_manager
  • galaxy.tool_shed.galaxy_install.tools.tool_panel_manager
  • galaxy.tool_shed.galaxy_install.update_repository_manager
  • galaxy.tool_shed.metadata
  • galaxy.tool_shed.metadata.metadata_generator
  • galaxy.tool_shed.repository_type
  • galaxy.tool_shed.tool_shed_registry
  • galaxy.tool_shed.tools
  • galaxy.tool_shed.tools.data_table_manager
  • galaxy.tool_shed.tools.tool_validator
  • galaxy.tool_shed.util
  • galaxy.tool_shed.util.basic_util
  • galaxy.tool_shed.util.container_util
  • galaxy.tool_shed.util.hg_util
  • galaxy.tool_shed.util.metadata_util
  • galaxy.tool_shed.util.repository_util
  • galaxy.tool_shed.util.shed_util_common
  • galaxy.tool_shed.util.tool_dependency_util
  • galaxy.tool_shed.util.tool_util
  • galaxy.tool_util
  • galaxy.tool_util.biotools
  • galaxy.tool_util.biotools.interface
  • galaxy.tool_util.biotools.source
  • galaxy.tool_util.client
  • galaxy.tool_util.client.staging
  • galaxy.tool_util.cwl
  • galaxy.tool_util.cwl.cwltool_deps
  • galaxy.tool_util.cwl.parser
  • galaxy.tool_util.cwl.representation
  • galaxy.tool_util.cwl.runnable
  • galaxy.tool_util.cwl.runtime_actions
  • galaxy.tool_util.cwl.schema
  • galaxy.tool_util.cwl.util
  • galaxy.tool_util.deps
  • galaxy.tool_util.deps.brew_exts
  • galaxy.tool_util.deps.brew_util
  • galaxy.tool_util.deps.commands
  • galaxy.tool_util.deps.conda_compat
  • galaxy.tool_util.deps.conda_util
  • galaxy.tool_util.deps.container_classes
  • galaxy.tool_util.deps.container_resolvers
  • galaxy.tool_util.deps.container_resolvers.explicit
  • galaxy.tool_util.deps.container_resolvers.mulled
  • galaxy.tool_util.deps.containers
  • galaxy.tool_util.deps.dependencies
  • galaxy.tool_util.deps.docker_util
  • galaxy.tool_util.deps.dockerfiles
  • galaxy.tool_util.deps.installable
  • galaxy.tool_util.deps.mulled
  • galaxy.tool_util.deps.mulled.get_tests
  • galaxy.tool_util.deps.mulled.mulled_build
  • galaxy.tool_util.deps.mulled.mulled_build_channel
  • galaxy.tool_util.deps.mulled.mulled_build_files
  • galaxy.tool_util.deps.mulled.mulled_build_tool
  • galaxy.tool_util.deps.mulled.mulled_hash
  • galaxy.tool_util.deps.mulled.mulled_list
  • galaxy.tool_util.deps.mulled.mulled_search
  • galaxy.tool_util.deps.mulled.mulled_update_singularity_containers
  • galaxy.tool_util.deps.mulled.util
  • galaxy.tool_util.deps.requirements
  • galaxy.tool_util.deps.resolvers
  • galaxy.tool_util.deps.resolvers.brewed_tool_shed_packages
  • galaxy.tool_util.deps.resolvers.conda
  • galaxy.tool_util.deps.resolvers.galaxy_packages
  • galaxy.tool_util.deps.resolvers.homebrew
  • galaxy.tool_util.deps.resolvers.lmod
  • galaxy.tool_util.deps.resolvers.modules
  • galaxy.tool_util.deps.resolvers.resolver_mixins
  • galaxy.tool_util.deps.resolvers.tool_shed_packages
  • galaxy.tool_util.deps.resolvers.unlinked_tool_shed_packages
  • galaxy.tool_util.deps.singularity_util
  • galaxy.tool_util.deps.views
  • galaxy.tool_util.edam_util
  • galaxy.tool_util.fetcher
  • galaxy.tool_util.lint
  • galaxy.tool_util.linters
  • galaxy.tool_util.linters.citations
  • galaxy.tool_util.linters.command
  • galaxy.tool_util.linters.cwl
  • galaxy.tool_util.linters.general
  • galaxy.tool_util.linters.help
  • galaxy.tool_util.linters.inputs
  • galaxy.tool_util.linters.outputs
  • galaxy.tool_util.linters.stdio
  • galaxy.tool_util.linters.tests
  • galaxy.tool_util.linters.xml_order
  • galaxy.tool_util.loader
  • galaxy.tool_util.loader_directory
  • galaxy.tool_util.locations
  • galaxy.tool_util.locations.dockstore
  • galaxy.tool_util.locations.file
  • galaxy.tool_util.locations.http
  • galaxy.tool_util.output_checker
  • galaxy.tool_util.parser
  • galaxy.tool_util.parser.cwl
  • galaxy.tool_util.parser.factory
  • galaxy.tool_util.parser.interface
  • galaxy.tool_util.parser.output_actions
  • galaxy.tool_util.parser.output_collection_def
  • galaxy.tool_util.parser.output_objects
  • galaxy.tool_util.parser.stdio
  • galaxy.tool_util.parser.util
  • galaxy.tool_util.parser.xml
  • galaxy.tool_util.parser.yaml
  • galaxy.tool_util.provided_metadata
  • galaxy.tool_util.toolbox
  • galaxy.tool_util.toolbox.base
  • galaxy.tool_util.toolbox.filters
  • galaxy.tool_util.toolbox.integrated_panel
  • galaxy.tool_util.toolbox.lineages
  • galaxy.tool_util.toolbox.lineages.factory
  • galaxy.tool_util.toolbox.lineages.interface
  • galaxy.tool_util.toolbox.panel
  • galaxy.tool_util.toolbox.parser
  • galaxy.tool_util.toolbox.tags
  • galaxy.tool_util.toolbox.views
  • galaxy.tool_util.toolbox.views.definitions
  • galaxy.tool_util.toolbox.views.edam
  • galaxy.tool_util.toolbox.views.interface
  • galaxy.tool_util.toolbox.views.sources
  • galaxy.tool_util.toolbox.views.static
  • galaxy.tool_util.toolbox.watcher
  • galaxy.tool_util.unittest_utils
  • galaxy.tool_util.unittest_utils.sample_data
  • galaxy.tool_util.verify
  • galaxy.tool_util.verify.asserts
  • galaxy.tool_util.verify.asserts.archive
  • galaxy.tool_util.verify.asserts.hdf5
  • galaxy.tool_util.verify.asserts.size
  • galaxy.tool_util.verify.asserts.tabular
  • galaxy.tool_util.verify.asserts.text
  • galaxy.tool_util.verify.asserts.xml
  • galaxy.tool_util.verify.interactor
  • galaxy.tool_util.verify.script
  • galaxy.tool_util.verify.test_data
  • galaxy.tool_util.verify.wait
  • galaxy.tools
  • galaxy.tools.actions
  • galaxy.tools.actions.data_manager
  • galaxy.tools.actions.data_source
  • galaxy.tools.actions.history_imp_exp
  • galaxy.tools.actions.metadata
  • galaxy.tools.actions.model_operations
  • galaxy.tools.actions.upload
  • galaxy.tools.actions.upload_common
  • galaxy.tools.biotools
  • galaxy.tools.cache
  • galaxy.tools.data
  • galaxy.tools.data_fetch
  • galaxy.tools.data_manager
  • galaxy.tools.data_manager.manager
  • galaxy.tools.error_reports
  • galaxy.tools.error_reports.plugins
  • galaxy.tools.error_reports.plugins.base_git
  • galaxy.tools.error_reports.plugins.email
  • galaxy.tools.error_reports.plugins.github
  • galaxy.tools.error_reports.plugins.gitlab
  • galaxy.tools.error_reports.plugins.influxdb
  • galaxy.tools.error_reports.plugins.json
  • galaxy.tools.error_reports.plugins.sentry
  • galaxy.tools.errors
  • galaxy.tools.evaluation
  • galaxy.tools.exception_handling
  • galaxy.tools.execute
  • galaxy.tools.expressions
  • galaxy.tools.expressions.evaluation
  • galaxy.tools.expressions.script
  • galaxy.tools.expressions.util
  • galaxy.tools.filters
  • galaxy.tools.imp_exp
  • galaxy.tools.imp_exp.export_history
  • galaxy.tools.imp_exp.unpack_tar_gz_archive
  • galaxy.tools.parameters
  • galaxy.tools.parameters.basic
  • galaxy.tools.parameters.dataset_matcher
  • galaxy.tools.parameters.dynamic_options
  • galaxy.tools.parameters.grouping
  • galaxy.tools.parameters.history_query
  • galaxy.tools.parameters.input_translation
  • galaxy.tools.parameters.meta
  • galaxy.tools.parameters.sanitize
  • galaxy.tools.parameters.validation
  • galaxy.tools.parameters.wrapped
  • galaxy.tools.parameters.wrapped_json
  • galaxy.tools.recommendations
  • galaxy.tools.remote_tool_eval
  • galaxy.tools.repositories
  • galaxy.tools.search
  • galaxy.tools.special_tools
  • galaxy.tools.test
  • galaxy.tools.util
  • galaxy.tools.util.galaxyops
  • galaxy.tools.util.maf_utilities
  • galaxy.tools.wrappers
  • galaxy.tours
  • galaxy.util
  • galaxy.util.aliaspickler
  • galaxy.util.bool_expressions
  • galaxy.util.bunch
  • galaxy.util.bytesize
  • galaxy.util.checkers
  • galaxy.util.commands
  • galaxy.util.compression_utils
  • galaxy.util.custom_logging
  • galaxy.util.custom_logging.fluent_log
  • galaxy.util.dbkeys
  • galaxy.util.dictifiable
  • galaxy.util.dynamic
  • galaxy.util.expressions
  • galaxy.util.facts
  • galaxy.util.filelock
  • galaxy.util.form_builder
  • galaxy.util.hash_util
  • galaxy.util.heartbeat
  • galaxy.util.image_util
  • galaxy.util.inflection
  • galaxy.util.json
  • galaxy.util.jstree
  • galaxy.util.lazy_process
  • galaxy.util.monitors
  • galaxy.util.odict
  • galaxy.util.oset
  • galaxy.util.pastescript
  • galaxy.util.pastescript.loadwsgi
  • galaxy.util.pastescript.serve
  • galaxy.util.path
  • galaxy.util.path.ntpath
  • galaxy.util.path.posixpath
  • galaxy.util.permutations
  • galaxy.util.plugin_config
  • galaxy.util.properties
  • galaxy.util.renamed_temporary_file
  • galaxy.util.resources
  • galaxy.util.rules_dsl
  • galaxy.util.sanitize_html
  • galaxy.util.script
  • galaxy.util.search
  • galaxy.util.simplegraph
  • galaxy.util.sleeper
  • galaxy.util.sockets
  • galaxy.util.specs
  • galaxy.util.sqlite
  • galaxy.util.submodules
  • galaxy.util.task
  • galaxy.util.template
  • galaxy.util.tool_shed
  • galaxy.util.tool_shed.common_util
  • galaxy.util.tool_shed.encoding_util
  • galaxy.util.tool_shed.xml_util
  • galaxy.util.tool_version
  • galaxy.util.topsort
  • galaxy.util.ucsc
  • galaxy.util.validation
  • galaxy.util.watcher
  • galaxy.util.web_compat
  • galaxy.util.xml_macros
  • galaxy.util.yaml_util
  • galaxy.util.zipstream
  • galaxy.version
  • galaxy.visualization
  • galaxy.visualization.data_providers
  • galaxy.visualization.data_providers.basic
  • galaxy.visualization.data_providers.cigar
  • galaxy.visualization.data_providers.genome
  • galaxy.visualization.data_providers.phyloviz
  • galaxy.visualization.data_providers.phyloviz.baseparser
  • galaxy.visualization.data_providers.phyloviz.newickparser
  • galaxy.visualization.data_providers.phyloviz.nexusparser
  • galaxy.visualization.data_providers.phyloviz.phyloxmlparser
  • galaxy.visualization.data_providers.registry
  • galaxy.visualization.genome
  • galaxy.visualization.genomes
  • galaxy.visualization.plugins
  • galaxy.visualization.plugins.config_parser
  • galaxy.visualization.plugins.interactive_environments
  • galaxy.visualization.plugins.plugin
  • galaxy.visualization.plugins.registry
  • galaxy.visualization.plugins.resource_parser
  • galaxy.visualization.plugins.utils
  • galaxy.visualization.tracks
  • galaxy.web
  • galaxy.web.buildapp
  • galaxy.web.form_builder
  • galaxy.web.framework
  • galaxy.web.framework.base
  • galaxy.web.framework.decorators
  • galaxy.web.framework.helpers
  • galaxy.web.framework.helpers.grids
  • galaxy.web.framework.helpers.tags
  • galaxy.web.framework.middleware
  • galaxy.web.framework.middleware.batch
  • galaxy.web.framework.middleware.error
  • galaxy.web.framework.middleware.profile
  • galaxy.web.framework.middleware.remoteuser
  • galaxy.web.framework.middleware.request_id
  • galaxy.web.framework.middleware.sqldebug
  • galaxy.web.framework.middleware.static
  • galaxy.web.framework.middleware.statsd
  • galaxy.web.framework.middleware.translogger
  • galaxy.web.framework.middleware.xforwardedhost
  • galaxy.web.legacy_framework
  • galaxy.web.legacy_framework.grids
  • galaxy.web.proxy
  • galaxy.web.statsd_client
  • galaxy.web_stack
  • galaxy.web_stack.gunicorn_config
  • galaxy.web_stack.handlers
  • galaxy.web_stack.message
  • galaxy.web_stack.transport
  • galaxy.webapps
  • galaxy.webapps.base
  • galaxy.webapps.base.api
  • galaxy.webapps.base.controller
  • galaxy.webapps.base.webapp
  • galaxy.webapps.galaxy
  • galaxy.webapps.galaxy.api
  • galaxy.webapps.galaxy.api.annotations
  • galaxy.webapps.galaxy.api.authenticate
  • galaxy.webapps.galaxy.api.cloud
  • galaxy.webapps.galaxy.api.cloudauthz
  • galaxy.webapps.galaxy.api.common
  • galaxy.webapps.galaxy.api.configuration
  • galaxy.webapps.galaxy.api.container_resolution
  • galaxy.webapps.galaxy.api.dataset_collections
  • galaxy.webapps.galaxy.api.datasets
  • galaxy.webapps.galaxy.api.datatypes
  • galaxy.webapps.galaxy.api.display_applications
  • galaxy.webapps.galaxy.api.dynamic_tools
  • galaxy.webapps.galaxy.api.extended_metadata
  • galaxy.webapps.galaxy.api.folder_contents
  • galaxy.webapps.galaxy.api.folders
  • galaxy.webapps.galaxy.api.forms
  • galaxy.webapps.galaxy.api.genomes
  • galaxy.webapps.galaxy.api.group_roles
  • galaxy.webapps.galaxy.api.group_users
  • galaxy.webapps.galaxy.api.groups
  • galaxy.webapps.galaxy.api.histories
  • galaxy.webapps.galaxy.api.history_contents
  • galaxy.webapps.galaxy.api.item_tags
  • galaxy.webapps.galaxy.api.job_files
  • galaxy.webapps.galaxy.api.job_lock
  • galaxy.webapps.galaxy.api.job_ports
  • galaxy.webapps.galaxy.api.jobs
  • galaxy.webapps.galaxy.api.libraries
  • galaxy.webapps.galaxy.api.library_contents
  • galaxy.webapps.galaxy.api.library_datasets
  • galaxy.webapps.galaxy.api.licenses
  • galaxy.webapps.galaxy.api.metrics
  • galaxy.webapps.galaxy.api.page_revisions
  • galaxy.webapps.galaxy.api.pages
  • galaxy.webapps.galaxy.api.plugins
  • galaxy.webapps.galaxy.api.provenance
  • galaxy.webapps.galaxy.api.quotas
  • galaxy.webapps.galaxy.api.remote_files
  • galaxy.webapps.galaxy.api.roles
  • galaxy.webapps.galaxy.api.sanitize_allow
  • galaxy.webapps.galaxy.api.search
  • galaxy.webapps.galaxy.api.tags
  • galaxy.webapps.galaxy.api.tool_data
  • galaxy.webapps.galaxy.api.tool_dependencies
  • galaxy.webapps.galaxy.api.tool_entry_points
  • galaxy.webapps.galaxy.api.tool_shed_repositories
  • galaxy.webapps.galaxy.api.tools
  • galaxy.webapps.galaxy.api.toolshed
  • galaxy.webapps.galaxy.api.tours
  • galaxy.webapps.galaxy.api.trs_consumer
  • galaxy.webapps.galaxy.api.trs_search
  • galaxy.webapps.galaxy.api.uploads
  • galaxy.webapps.galaxy.api.users
  • galaxy.webapps.galaxy.api.visualizations
  • galaxy.webapps.galaxy.api.webhooks
  • galaxy.webapps.galaxy.api.workflows
  • galaxy.webapps.galaxy.buildapp
  • galaxy.webapps.galaxy.controllers
  • galaxy.webapps.galaxy.controllers.admin
  • galaxy.webapps.galaxy.controllers.admin_toolshed
  • galaxy.webapps.galaxy.controllers.async
  • galaxy.webapps.galaxy.controllers.authnz
  • galaxy.webapps.galaxy.controllers.data_manager
  • galaxy.webapps.galaxy.controllers.dataset
  • galaxy.webapps.galaxy.controllers.error
  • galaxy.webapps.galaxy.controllers.forms
  • galaxy.webapps.galaxy.controllers.history
  • galaxy.webapps.galaxy.controllers.interactive_environments
  • galaxy.webapps.galaxy.controllers.library
  • galaxy.webapps.galaxy.controllers.page
  • galaxy.webapps.galaxy.controllers.root
  • galaxy.webapps.galaxy.controllers.shed_tool_static
  • galaxy.webapps.galaxy.controllers.tag
  • galaxy.webapps.galaxy.controllers.tool_runner
  • galaxy.webapps.galaxy.controllers.user
  • galaxy.webapps.galaxy.controllers.userskeys
  • galaxy.webapps.galaxy.controllers.visualization
  • galaxy.webapps.galaxy.controllers.workflow
  • galaxy.webapps.galaxy.fast_app
  • galaxy.webapps.galaxy.fast_factory
  • galaxy.webapps.galaxy.services
  • galaxy.webapps.galaxy.services.base
  • galaxy.webapps.galaxy.services.dataset_collections
  • galaxy.webapps.galaxy.services.datasets
  • galaxy.webapps.galaxy.services.histories
  • galaxy.webapps.galaxy.services.history_contents
  • galaxy.webapps.galaxy.services.libraries
  • galaxy.webapps.galaxy.services.library_folder_contents
  • galaxy.webapps.galaxy.services.library_folders
  • galaxy.webapps.galaxy.services.pages
  • galaxy.webapps.galaxy.services.quotas
  • galaxy.webapps.galaxy.services.sharable
  • galaxy.webapps.galaxy.services.visualizations
  • galaxy.webapps.galaxy.workers
  • galaxy.webapps.reports
  • galaxy.webapps.reports.api
  • galaxy.webapps.reports.app
  • galaxy.webapps.reports.buildapp
  • galaxy.webapps.reports.config
  • galaxy.webapps.reports.controllers
  • galaxy.webapps.reports.controllers.history
  • galaxy.webapps.reports.controllers.home
  • galaxy.webapps.reports.controllers.jobs
  • galaxy.webapps.reports.controllers.query
  • galaxy.webapps.reports.controllers.root
  • galaxy.webapps.reports.controllers.system
  • galaxy.webapps.reports.controllers.tools
  • galaxy.webapps.reports.controllers.users
  • galaxy.webapps.reports.controllers.workflows
  • galaxy.webapps.reports.fast_app
  • galaxy.webapps.reports.fast_factory
  • galaxy.webapps.util
  • galaxy.webhooks
  • galaxy.work
  • galaxy.work.context
  • galaxy.workflow
  • galaxy.workflow.extract
  • galaxy.workflow.modules
  • galaxy.workflow.refactor
  • galaxy.workflow.refactor.execute
  • galaxy.workflow.refactor.schema
  • galaxy.workflow.render
  • galaxy.workflow.reports
  • galaxy.workflow.reports.generators
  • galaxy.workflow.reports.generators.markdown
  • galaxy.workflow.resources
  • galaxy.workflow.run
  • galaxy.workflow.run_request
  • galaxy.workflow.schedulers
  • galaxy.workflow.schedulers.core
  • galaxy.workflow.scheduling_manager
  • galaxy.workflow.steps
  • galaxy.workflow.trs_proxy
  • galaxy_data_manager_data_path (galaxy.config.GalaxyAppConfiguration attribute)
  • galaxy_directory() (in module galaxy.util)
  • galaxy_driver_class (galaxy_test.base.testcase.FunctionalTestCase attribute)
  • galaxy_ext
  • galaxy_ext.expressions
  • galaxy_ext.expressions.handle_job
  • galaxy_ext.metadata
  • galaxy_ext.metadata.set_metadata
  • galaxy_infrastructure_url (galaxy.config.GalaxyAppConfiguration attribute)
  • galaxy_instance_id() (in module galaxy.jobs.runners.util.pykube_util)
  • galaxy_interactor (galaxy_test.base.populators.BaseDatasetPopulator attribute)
  • galaxy_lib_dir (galaxy.jobs.JobWrapper property)
  • galaxy_login() (tool_shed.test.base.twilltestcase.ShedTwillTestCase method)
  • galaxy_logout() (tool_shed.test.base.twilltestcase.ShedTwillTestCase method)
  • galaxy_param_type (galaxy.tool_util.cwl.representation.TypeRepresentation property)
  • galaxy_samples_directory() (in module galaxy.util)
  • galaxy_scoped_session (class in galaxy.model.scoped_session)
  • galaxy_session (galaxy.model.Event attribute)
  • galaxy_sessions (galaxy.model.History attribute)
  • galaxy_system_pwent (galaxy.jobs.JobWrapper property)
  • galaxy_task() (in module galaxy.celery)
  • galaxy_test
  • galaxy_test.api
  • galaxy_test.api.conftest
  • galaxy_test.api.cwl
  • galaxy_test.api.sharable
  • galaxy_test.api.test_api_batch
  • galaxy_test.api.test_authenticate
  • galaxy_test.api.test_configuration
  • galaxy_test.api.test_dataset_collections
  • galaxy_test.api.test_datasets
  • galaxy_test.api.test_datatypes
  • galaxy_test.api.test_display_applications
  • galaxy_test.api.test_folder_contents
  • galaxy_test.api.test_folders
  • galaxy_test.api.test_framework
  • galaxy_test.api.test_group_roles
  • galaxy_test.api.test_group_users
  • galaxy_test.api.test_groups
  • galaxy_test.api.test_histories
  • galaxy_test.api.test_history_contents
  • galaxy_test.api.test_history_contents_provenance
  • galaxy_test.api.test_jobs
  • galaxy_test.api.test_libraries
  • galaxy_test.api.test_licenses
  • galaxy_test.api.test_page_revisions
  • galaxy_test.api.test_pages
  • galaxy_test.api.test_roles
  • galaxy_test.api.test_search

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