- GAFASQLite (class in galaxy.datatypes.binary)
- galactic_job_json() (in module galaxy.tools.cwl.util)
- galaxy (galaxy.web.framework.middleware.batch.BatchMiddleware attribute)
- galaxy.actions (module)
- galaxy.actions.admin (module)
- galaxy.actions.library (module)
- galaxy.app (module)
- galaxy.auth (module)
- galaxy.auth.providers (module)
- galaxy.auth.providers.alwaysreject (module)
- galaxy.auth.providers.ldap_ad (module)
- galaxy.auth.providers.localdb (module)
- galaxy.auth.providers.pam_auth (module)
- galaxy.auth.util (module)
- galaxy.authnz (module)
- galaxy.authnz.managers (module)
- galaxy.authnz.psa_authnz (module)
- galaxy.config (module)
- galaxy.containers (module)
- galaxy.containers.docker (module)
- galaxy.containers.docker_decorators (module)
- galaxy.containers.docker_model (module)
- galaxy.containers.docker_swarm (module)
- galaxy.dataset_collections (module)
- galaxy.dataset_collections.builder (module)
- galaxy.dataset_collections.matching (module)
- galaxy.dataset_collections.registry (module)
- galaxy.dataset_collections.structure (module)
- galaxy.dataset_collections.subcollections (module)
- galaxy.dataset_collections.type_description (module)
- galaxy.dataset_collections.types (module)
- galaxy.dataset_collections.types.list (module)
- galaxy.dataset_collections.types.paired (module)
- galaxy.datatypes (module)
- galaxy.datatypes.annotation (module)
- galaxy.datatypes.assembly (module)
- galaxy.datatypes.binary (module)
- galaxy.datatypes.blast (module)
- galaxy.datatypes.checkers (module)
- galaxy.datatypes.chrominfo (module)
- galaxy.datatypes.constructive_solid_geometry (module)
- galaxy.datatypes.converters (module)
- galaxy.datatypes.converters.bed_to_gff_converter (module)
- galaxy.datatypes.converters.bedgraph_to_array_tree_converter (module)
- galaxy.datatypes.converters.bgzip (module)
- galaxy.datatypes.converters.cram_to_bam (module)
- galaxy.datatypes.converters.fasta_to_len (module)
- galaxy.datatypes.converters.fasta_to_tabular_converter (module)
- galaxy.datatypes.converters.fastq_to_fqtoc (module)
- galaxy.datatypes.converters.fastqsolexa_to_fasta_converter (module)
- galaxy.datatypes.converters.fastqsolexa_to_qual_converter (module)
- galaxy.datatypes.converters.gff_to_bed_converter (module)
- galaxy.datatypes.converters.gff_to_interval_index_converter (module)
- galaxy.datatypes.converters.interval_to_bed_converter (module)
- galaxy.datatypes.converters.interval_to_bedstrict_converter (module)
- galaxy.datatypes.converters.interval_to_coverage (module)
- galaxy.datatypes.converters.interval_to_fli (module)
- galaxy.datatypes.converters.interval_to_interval_index_converter (module)
- galaxy.datatypes.converters.interval_to_tabix_converter (module)
- galaxy.datatypes.converters.lped_to_fped_converter (module)
- galaxy.datatypes.converters.lped_to_pbed_converter (module)
- galaxy.datatypes.converters.maf_to_fasta_converter (module)
- galaxy.datatypes.converters.maf_to_interval_converter (module)
- galaxy.datatypes.converters.pbed_ldreduced_converter (module)
- galaxy.datatypes.converters.pbed_to_lped_converter (module)
- galaxy.datatypes.converters.picard_interval_list_to_bed6_converter (module)
- galaxy.datatypes.converters.pileup_to_interval_index_converter (module)
- galaxy.datatypes.converters.ref_to_seq_taxonomy_converter (module)
- galaxy.datatypes.converters.sam_to_bam (module)
- galaxy.datatypes.converters.tabular_to_dbnsfp (module)
- galaxy.datatypes.converters.vcf_to_interval_index_converter (module)
- galaxy.datatypes.converters.vcf_to_vcf_bgzip (module)
- galaxy.datatypes.converters.wiggle_to_array_tree_converter (module)
- galaxy.datatypes.converters.wiggle_to_simple_converter (module)
- galaxy.datatypes.coverage (module)
- galaxy.datatypes.data (module)
- galaxy.datatypes.dataproviders (module)
- galaxy.datatypes.dataproviders.base (module)
- galaxy.datatypes.dataproviders.chunk (module)
- galaxy.datatypes.dataproviders.column (module)
- galaxy.datatypes.dataproviders.dataset (module)
- galaxy.datatypes.dataproviders.decorators (module)
- galaxy.datatypes.dataproviders.exceptions (module)
- galaxy.datatypes.dataproviders.external (module)
- galaxy.datatypes.dataproviders.hierarchy (module)
- galaxy.datatypes.dataproviders.line (module)
- galaxy.datatypes.display_applications (module)
- galaxy.datatypes.display_applications.application (module)
- galaxy.datatypes.display_applications.parameters (module)
- galaxy.datatypes.display_applications.util (module)
- galaxy.datatypes.genetics (module)
- galaxy.datatypes.graph (module)
- galaxy.datatypes.images (module)
- galaxy.datatypes.interval (module)
- galaxy.datatypes.metadata (module)
- galaxy.datatypes.molecules (module)
- galaxy.datatypes.mothur (module)
- galaxy.datatypes.msa (module)
- galaxy.datatypes.neo4j (module)
- galaxy.datatypes.ngsindex (module)
- galaxy.datatypes.phylip (module)
- galaxy.datatypes.plant_tribes (module)
- galaxy.datatypes.proteomics (module)
- galaxy.datatypes.qualityscore (module)
- galaxy.datatypes.registry (module)
- galaxy.datatypes.sequence (module)
- galaxy.datatypes.sniff (module)
- galaxy.datatypes.tabular (module)
- galaxy.datatypes.text (module)
- galaxy.datatypes.tracks (module)
- galaxy.datatypes.triples (module)
- galaxy.datatypes.upload_util (module)
- galaxy.datatypes.util (module)
- galaxy.datatypes.util.generic_util (module)
- galaxy.datatypes.util.gff_util (module)
- galaxy.datatypes.xml (module)
- galaxy.dependencies (module)
- galaxy.eggs (module)
- galaxy.exceptions (module)
- galaxy.exceptions.error_codes (module)
- galaxy.forms (module)
- galaxy.forms.forms (module)
- galaxy.jobs (module)
- galaxy.jobs.actions (module)
- galaxy.jobs.actions.post (module)
- galaxy.jobs.command_factory (module)
- galaxy.jobs.datasets (module)
- galaxy.jobs.dynamic_tool_destination (module)
- galaxy.jobs.handler (module)
- galaxy.jobs.manager (module)
- galaxy.jobs.mapper (module)
- galaxy.jobs.metrics (module)
- galaxy.jobs.metrics.collectl (module)
- galaxy.jobs.metrics.collectl.cli (module)
- galaxy.jobs.metrics.collectl.processes (module)
- galaxy.jobs.metrics.collectl.stats (module)
- galaxy.jobs.metrics.collectl.subsystems (module)
- galaxy.jobs.metrics.formatting (module)
- galaxy.jobs.metrics.instrumenters (module)
- galaxy.jobs.metrics.instrumenters.cgroup (module)
- galaxy.jobs.metrics.instrumenters.collectl (module)
- galaxy.jobs.metrics.instrumenters.core (module)
- galaxy.jobs.metrics.instrumenters.cpuinfo (module)
- galaxy.jobs.metrics.instrumenters.env (module)
- galaxy.jobs.metrics.instrumenters.hostname (module)
- galaxy.jobs.metrics.instrumenters.meminfo (module)
- galaxy.jobs.metrics.instrumenters.uname (module)
- galaxy.jobs.output_checker (module)
- galaxy.jobs.rule_helper (module)
- galaxy.jobs.runners (module)
- galaxy.jobs.runners.chronos (module)
- galaxy.jobs.runners.cli (module)
- galaxy.jobs.runners.condor (module)
- galaxy.jobs.runners.drmaa (module)
- galaxy.jobs.runners.godocker (module)
- galaxy.jobs.runners.kubernetes (module)
- galaxy.jobs.runners.local (module)
- galaxy.jobs.runners.pbs (module)
- galaxy.jobs.runners.pulsar (module)
- galaxy.jobs.runners.slurm (module)
- galaxy.jobs.runners.state_handler_factory (module)
- galaxy.jobs.runners.state_handlers (module)
- galaxy.jobs.runners.state_handlers.resubmit (module)
- galaxy.jobs.runners.tasks (module)
- galaxy.jobs.runners.util (module)
- galaxy.jobs.runners.util.cli (module)
- galaxy.jobs.runners.util.cli.factory (module)
- galaxy.jobs.runners.util.cli.job (module)
- galaxy.jobs.runners.util.cli.job.slurm (module)
- galaxy.jobs.runners.util.cli.job.slurm_torque (module)
- galaxy.jobs.runners.util.cli.job.torque (module)
- galaxy.jobs.runners.util.cli.shell (module)
- galaxy.jobs.runners.util.cli.shell.local (module)
- galaxy.jobs.runners.util.cli.shell.rsh (module)
- galaxy.jobs.runners.util.condor (module)
- galaxy.jobs.runners.util.env (module)
- galaxy.jobs.runners.util.external (module)
- galaxy.jobs.runners.util.job_script (module)
- galaxy.jobs.runners.util.kill (module)
- galaxy.jobs.runners.util.sudo (module)
- galaxy.jobs.splitters (module)
- galaxy.jobs.splitters.basic (module)
- galaxy.jobs.splitters.multi (module)
- galaxy.jobs.stock_rules (module)
- galaxy.jobs.transfer_manager (module)
- galaxy.main (module)
- galaxy.managers (module)
- galaxy.managers.annotatable (module)
- galaxy.managers.api_keys (module)
- galaxy.managers.base (module)
- galaxy.managers.citations (module)
- galaxy.managers.cloud (module)
- galaxy.managers.collections (module)
- galaxy.managers.collections_util (module)
- galaxy.managers.configuration (module)
- galaxy.managers.containers (module)
- galaxy.managers.context (module)
- galaxy.managers.datasets (module)
- galaxy.managers.deletable (module)
- galaxy.managers.folders (module)
- galaxy.managers.hdas (module)
- galaxy.managers.hdcas (module)
- galaxy.managers.histories (module)
- galaxy.managers.history_contents (module)
- galaxy.managers.jobs (module)
- galaxy.managers.lddas (module)
- galaxy.managers.libraries (module)
- galaxy.managers.library_datasets (module)
- galaxy.managers.pages (module)
- galaxy.managers.ratable (module)
- galaxy.managers.rbac_secured (module)
- galaxy.managers.roles (module)
- galaxy.managers.secured (module)
- galaxy.managers.sharable (module)
- galaxy.managers.taggable (module)
- galaxy.managers.tags (module)
- galaxy.managers.users (module)
- galaxy.managers.visualizations (module)
- galaxy.managers.workflows (module)
- galaxy.model (module)
- galaxy.model.base (module)
- galaxy.model.custom_types (module)
- galaxy.model.item_attrs (module)
- galaxy.model.mapping (module)
- galaxy.model.metadata (module)
- galaxy.model.migrate (module)
- galaxy.model.migrate.check (module)
- galaxy.model.orm (module)
- galaxy.model.orm.engine_factory (module)
- galaxy.model.orm.logging_connection_proxy (module)
- galaxy.model.orm.now (module)
- galaxy.model.orm.scripts (module)
- galaxy.model.search (module)
- galaxy.model.tool_shed_install (module)
- galaxy.model.tool_shed_install.mapping (module)
- galaxy.model.tool_shed_install.migrate (module)
- galaxy.model.tool_shed_install.migrate.check (module)
- galaxy.model.util (module)
- galaxy.objectstore (module)
- galaxy.objectstore.azure_blob (module)
- galaxy.objectstore.cloud (module)
- galaxy.objectstore.pithos (module)
- galaxy.objectstore.pulsar (module)
- galaxy.objectstore.rods (module)
- galaxy.objectstore.s3 (module)
- galaxy.objectstore.s3_multipart_upload (module)
- galaxy.openid (module)
- galaxy.openid.providers (module)
- galaxy.queue_worker (module)
- galaxy.queues (module)
- galaxy.quota (module)
- galaxy.security (module)
- galaxy.security.passwords (module)
- galaxy.security.validate_user_input (module)
- galaxy.tools (module)
- galaxy.tools.actions (module)
- galaxy.tools.actions.data_manager (module)
- galaxy.tools.actions.data_source (module)
- galaxy.tools.actions.history_imp_exp (module)
- galaxy.tools.actions.metadata (module)
- galaxy.tools.actions.model_operations (module)
- galaxy.tools.actions.upload (module)
- galaxy.tools.actions.upload_common (module)
- galaxy.tools.cache (module)
- galaxy.tools.cwl (module)
- galaxy.tools.cwl.cwltool_deps (module)
- galaxy.tools.cwl.parser (module)
- galaxy.tools.cwl.representation (module)
- galaxy.tools.cwl.runtime_actions (module)
- galaxy.tools.cwl.schema (module)
- galaxy.tools.cwl.util (module)
- galaxy.tools.data (module)
- galaxy.tools.data_fetch (module)
- galaxy.tools.data_manager (module)
- galaxy.tools.data_manager.manager (module)
- galaxy.tools.deps (module)
- galaxy.tools.deps.brew_exts (module)
- galaxy.tools.deps.brew_util (module)
- galaxy.tools.deps.commands (module)
- galaxy.tools.deps.conda_compat (module)
- galaxy.tools.deps.conda_util (module)
- galaxy.tools.deps.container_resolvers (module)
- galaxy.tools.deps.container_resolvers.explicit (module)
- galaxy.tools.deps.container_resolvers.mulled (module)
- galaxy.tools.deps.containers (module)
- galaxy.tools.deps.dependencies (module)
- galaxy.tools.deps.docker_util (module)
- galaxy.tools.deps.dockerfiles (module)
- galaxy.tools.deps.installable (module)
- galaxy.tools.deps.mulled (module)
- galaxy.tools.deps.mulled.mulled_build (module)
- galaxy.tools.deps.mulled.mulled_build_channel (module)
- galaxy.tools.deps.mulled.mulled_build_files (module)
- galaxy.tools.deps.mulled.mulled_build_tool (module)
- galaxy.tools.deps.mulled.mulled_search (module)
- galaxy.tools.deps.mulled.util (module)
- galaxy.tools.deps.requirements (module)
- galaxy.tools.deps.resolvers (module)
- galaxy.tools.deps.resolvers.brewed_tool_shed_packages (module)
- galaxy.tools.deps.resolvers.conda (module)
- galaxy.tools.deps.resolvers.galaxy_packages (module)
- galaxy.tools.deps.resolvers.homebrew (module)
- galaxy.tools.deps.resolvers.lmod (module)
- galaxy.tools.deps.resolvers.modules (module)
- galaxy.tools.deps.resolvers.resolver_mixins (module)
- galaxy.tools.deps.resolvers.tool_shed_packages (module)
- galaxy.tools.deps.resolvers.unlinked_tool_shed_packages (module)
- galaxy.tools.deps.singularity_util (module)
- galaxy.tools.deps.views (module)
- galaxy.tools.error_reports (module)
- galaxy.tools.error_reports.plugins (module)
- galaxy.tools.error_reports.plugins.biostars (module)
- galaxy.tools.error_reports.plugins.email (module)
- galaxy.tools.error_reports.plugins.github (module)
- galaxy.tools.error_reports.plugins.influxdb (module)
- galaxy.tools.error_reports.plugins.json (module)
- galaxy.tools.error_reports.plugins.sentry (module)
- galaxy.tools.errors (module)
- galaxy.tools.evaluation (module)
- galaxy.tools.exception_handling (module)
- galaxy.tools.execute (module)
- galaxy.tools.fetcher (module)
- galaxy.tools.filters (module)
- galaxy.tools.imp_exp (module)
- galaxy.tools.imp_exp.export_history (module)
- galaxy.tools.imp_exp.unpack_tar_gz_archive (module)
- galaxy.tools.lint (module)
- galaxy.tools.lint_util (module)
- galaxy.tools.linters (module)
- galaxy.tools.linters.citations (module)
- galaxy.tools.linters.command (module)
- galaxy.tools.linters.general (module)
- galaxy.tools.linters.help (module)
- galaxy.tools.linters.inputs (module)
- galaxy.tools.linters.outputs (module)
- galaxy.tools.linters.stdio (module)
- galaxy.tools.linters.tests (module)
- galaxy.tools.linters.xml_order (module)
- galaxy.tools.loader (module)
- galaxy.tools.loader_directory (module)
- galaxy.tools.locations (module)
- galaxy.tools.locations.dockstore (module)
- galaxy.tools.locations.file (module)
- galaxy.tools.locations.http (module)
- galaxy.tools.parameters (module)
- galaxy.tools.parameters.basic (module)
- galaxy.tools.parameters.dataset_matcher (module)
- galaxy.tools.parameters.dynamic_options (module)
- galaxy.tools.parameters.grouping (module)
- galaxy.tools.parameters.history_query (module)
- galaxy.tools.parameters.input_translation (module)
- galaxy.tools.parameters.meta (module)
- galaxy.tools.parameters.output_collect (module)
- galaxy.tools.parameters.sanitize (module)
- galaxy.tools.parameters.validation (module)
- galaxy.tools.parameters.wrapped (module)
- galaxy.tools.parameters.wrapped_json (module)
- galaxy.tools.parser (module)
- galaxy.tools.parser.cwl (module)
- galaxy.tools.parser.error_level (module)
- galaxy.tools.parser.factory (module)
- galaxy.tools.parser.interface (module)
- galaxy.tools.parser.output_actions (module)
- galaxy.tools.parser.output_collection_def (module)
- galaxy.tools.parser.output_objects (module)
- galaxy.tools.parser.util (module)
- galaxy.tools.parser.xml (module)
- galaxy.tools.parser.yaml (module)
- galaxy.tools.repositories (module)
- galaxy.tools.search (module)
- galaxy.tools.special_tools (module)
- galaxy.tools.test (module)
- galaxy.tools.toolbox (module)
- galaxy.tools.toolbox.base (module)
- galaxy.tools.toolbox.filters (module)
- galaxy.tools.toolbox.integrated_panel (module)
- galaxy.tools.toolbox.lineages (module)
- galaxy.tools.toolbox.lineages.factory (module)
- galaxy.tools.toolbox.lineages.interface (module)
- galaxy.tools.toolbox.panel (module)
- galaxy.tools.toolbox.parser (module)
- galaxy.tools.toolbox.tags (module)
- galaxy.tools.toolbox.watcher (module)
- galaxy.tools.util (module)
- galaxy.tools.util.galaxyops (module)
- galaxy.tools.util.maf_utilities (module)
- galaxy.tools.verify (module)
- galaxy.tools.verify.asserts (module)
- galaxy.tools.verify.asserts.tabular (module)
- galaxy.tools.verify.asserts.text (module)
- galaxy.tools.verify.asserts.xml (module)
- galaxy.tools.verify.interactor (module)
- galaxy.tools.verify.script (module)
- galaxy.tools.verify.test_data (module)
- galaxy.tools.wrappers (module)
- galaxy.tours (module)
- galaxy.util (module)
- galaxy.util.aliaspickler (module)
- galaxy.util.biostar (module)
- galaxy.util.bunch (module)
- galaxy.util.checkers (module)
- galaxy.util.compression_utils (module)
- galaxy.util.create_history_template (module)
- galaxy.util.dbkeys (module)
- galaxy.util.dictifiable (module)
- galaxy.util.expressions (module)
- galaxy.util.facts (module)
- galaxy.util.filelock (module)
- galaxy.util.handlers (module)
- galaxy.util.hash_util (module)
- galaxy.util.heartbeat (module)
- galaxy.util.image_util (module)
- galaxy.util.inflection (module)
- galaxy.util.json (module)
- galaxy.util.jstree (module)
- galaxy.util.lazy_process (module)
- galaxy.util.logging (module)
- galaxy.util.logging.fluent_log (module)
- galaxy.util.monitors (module)
- galaxy.util.none_like (module)
- galaxy.util.object_wrapper (module)
- galaxy.util.odict (module)
- galaxy.util.oset (module)
- galaxy.util.pastescript (module)
- galaxy.util.pastescript.loadwsgi (module)
- galaxy.util.pastescript.serve (module)
- galaxy.util.path (module)
- galaxy.util.path.ntpath (module)
- galaxy.util.path.posixpath (module)
- galaxy.util.permutations (module)
- galaxy.util.plugin_config (module)
- galaxy.util.properties (module)
- galaxy.util.renamed_temporary_file (module)
- galaxy.util.rules_dsl (module)
- galaxy.util.sanitize_html (module)
- galaxy.util.script (module)
- galaxy.util.simplegraph (module)
- galaxy.util.sleeper (module)
- galaxy.util.sockets (module)
- galaxy.util.specs (module)
- galaxy.util.sqlite (module)
- galaxy.util.streamball (module)
- galaxy.util.submodules (module)
- galaxy.util.template (module)
- galaxy.util.tool_version (module)
- galaxy.util.topsort (module)
- galaxy.util.ucsc (module)
- galaxy.util.validation (module)
- galaxy.util.watcher (module)
- galaxy.util.xml_macros (module)
- galaxy.version (module)
- galaxy.visualization (module)
- galaxy.visualization.data_providers (module)
- galaxy.visualization.data_providers.basic (module)
- galaxy.visualization.data_providers.cigar (module)
- galaxy.visualization.data_providers.genome (module)
- galaxy.visualization.data_providers.phyloviz (module)
- galaxy.visualization.data_providers.phyloviz.baseparser (module)
- galaxy.visualization.data_providers.phyloviz.newickparser (module)
- galaxy.visualization.data_providers.phyloviz.nexusparser (module)
- galaxy.visualization.data_providers.phyloviz.phyloxmlparser (module)
- galaxy.visualization.data_providers.registry (module)
- galaxy.visualization.genome (module)
- galaxy.visualization.genomes (module)
- galaxy.visualization.plugins (module)
- galaxy.visualization.plugins.config_parser (module)
- galaxy.visualization.plugins.interactive_environments (module)
- galaxy.visualization.plugins.plugin (module)
- galaxy.visualization.plugins.registry (module)
- galaxy.visualization.plugins.resource_parser (module)
- galaxy.visualization.plugins.utils (module)
- galaxy.visualization.tracks (module)
- galaxy.web (module)
- galaxy.web.base (module)
- galaxy.web.base.controller (module)
- galaxy.web.buildapp (module)
- galaxy.web.form_builder (module)
- galaxy.web.formatting (module)
- galaxy.web.framework (module)
- galaxy.web.framework.base (module)
- galaxy.web.framework.decorators (module)
- galaxy.web.framework.helpers (module)
- galaxy.web.framework.helpers.grids (module)
- galaxy.web.framework.helpers.tags (module)
- galaxy.web.framework.middleware (module)
- galaxy.web.framework.middleware.batch (module)
- galaxy.web.framework.middleware.error (module)
- galaxy.web.framework.middleware.profile (module)
- galaxy.web.framework.middleware.remoteuser (module)
- galaxy.web.framework.middleware.request_id (module)
- galaxy.web.framework.middleware.sentry (module)
- galaxy.web.framework.middleware.sqldebug (module)
- galaxy.web.framework.middleware.static (module)
- galaxy.web.framework.middleware.statsd (module)
- galaxy.web.framework.middleware.translogger (module)
- galaxy.web.framework.middleware.xforwardedhost (module)
- galaxy.web.framework.openid_manager (module)
- galaxy.web.framework.webapp (module)
- galaxy.web.params (module)
- galaxy.web.proxy (module)
- galaxy.web.security (module)
- galaxy.web.stack (module)
- galaxy.web.stack.message (module)
- galaxy.web.stack.transport (module)
- galaxy.webapps (module)
- galaxy.webapps.config_manage (module)
- galaxy.webapps.galaxy (module)
- galaxy.webapps.galaxy.api (module)
- galaxy.webapps.galaxy.api.annotations (module), [1]
- galaxy.webapps.galaxy.api.authenticate (module), [1]
- galaxy.webapps.galaxy.api.cloud (module), [1]
- galaxy.webapps.galaxy.api.configuration (module), [1]
- galaxy.webapps.galaxy.api.dataset_collections (module), [1]
- galaxy.webapps.galaxy.api.datasets (module), [1]
- galaxy.webapps.galaxy.api.datatypes (module), [1]
- galaxy.webapps.galaxy.api.extended_metadata (module), [1]
- galaxy.webapps.galaxy.api.folder_contents (module), [1]
- galaxy.webapps.galaxy.api.folders (module), [1]
- galaxy.webapps.galaxy.api.forms (module), [1]
- galaxy.webapps.galaxy.api.genomes (module), [1]
- galaxy.webapps.galaxy.api.group_roles (module), [1]
- galaxy.webapps.galaxy.api.group_users (module), [1]
- galaxy.webapps.galaxy.api.groups (module), [1]
- galaxy.webapps.galaxy.api.histories (module), [1]
- galaxy.webapps.galaxy.api.history_contents (module), [1]
- galaxy.webapps.galaxy.api.item_tags (module), [1]
- galaxy.webapps.galaxy.api.job_files (module), [1]
- galaxy.webapps.galaxy.api.jobs (module), [1]
- galaxy.webapps.galaxy.api.libraries (module), [1]
- galaxy.webapps.galaxy.api.library_contents (module), [1]
- galaxy.webapps.galaxy.api.library_datasets (module), [1]
- galaxy.webapps.galaxy.api.metrics (module), [1]
- galaxy.webapps.galaxy.api.page_revisions (module), [1]
- galaxy.webapps.galaxy.api.pages (module), [1]
- galaxy.webapps.galaxy.api.plugins (module), [1]
- galaxy.webapps.galaxy.api.provenance (module), [1]
- galaxy.webapps.galaxy.api.quotas (module), [1]
- galaxy.webapps.galaxy.api.remote_files (module), [1]
- galaxy.webapps.galaxy.api.roles (module), [1]
- galaxy.webapps.galaxy.api.search (module), [1]
- galaxy.webapps.galaxy.api.tool_data (module), [1]
- galaxy.webapps.galaxy.api.tool_dependencies (module), [1]
- galaxy.webapps.galaxy.api.tool_shed_repositories (module), [1]
- galaxy.webapps.galaxy.api.tools (module), [1]
- galaxy.webapps.galaxy.api.toolshed (module), [1]
- galaxy.webapps.galaxy.api.tours (module), [1]
- galaxy.webapps.galaxy.api.uploads (module), [1]
- galaxy.webapps.galaxy.api.users (module), [1]
- galaxy.webapps.galaxy.api.visualizations (module), [1]
- galaxy.webapps.galaxy.api.webhooks (module), [1]
- galaxy.webapps.galaxy.api.workflows (module), [1]
- galaxy.webapps.galaxy.buildapp (module)
- galaxy.webapps.galaxy.config_watchers (module)
- galaxy.webapps.galaxy.controllers (module)
- galaxy.webapps.galaxy.controllers.admin (module)
- galaxy.webapps.galaxy.controllers.admin_toolshed (module)
- galaxy.webapps.galaxy.controllers.async (module)
- galaxy.webapps.galaxy.controllers.authnz (module)
- galaxy.webapps.galaxy.controllers.biostar (module)
- galaxy.webapps.galaxy.controllers.data_manager (module)
- galaxy.webapps.galaxy.controllers.dataset (module)
- galaxy.webapps.galaxy.controllers.error (module)
- galaxy.webapps.galaxy.controllers.forms (module)
- galaxy.webapps.galaxy.controllers.history (module)
- galaxy.webapps.galaxy.controllers.interactive_environments (module)
- galaxy.webapps.galaxy.controllers.library (module)
- galaxy.webapps.galaxy.controllers.page (module)
- galaxy.webapps.galaxy.controllers.root (module)
- galaxy.webapps.galaxy.controllers.tag (module)
- galaxy.webapps.galaxy.controllers.tool_runner (module)
- galaxy.webapps.galaxy.controllers.user (module)
- galaxy.webapps.galaxy.controllers.userskeys (module)
- galaxy.webapps.galaxy.controllers.visualization (module)
- galaxy.webapps.galaxy.controllers.workflow (module)
- galaxy.webapps.reports (module)
- galaxy.webapps.reports.app (module)
- galaxy.webapps.reports.buildapp (module)
- galaxy.webapps.reports.config (module)
- galaxy.webapps.reports.controllers (module)
- galaxy.webapps.reports.controllers.history (module)
- galaxy.webapps.reports.controllers.home (module)
- galaxy.webapps.reports.controllers.jobs (module)
- galaxy.webapps.reports.controllers.query (module)
- galaxy.webapps.reports.controllers.root (module)
- galaxy.webapps.reports.controllers.system (module)
- galaxy.webapps.reports.controllers.tools (module)
- galaxy.webapps.reports.controllers.users (module)
- galaxy.webapps.reports.controllers.workflows (module)
- galaxy.webapps.reports.framework (module)
- galaxy.webapps.reports.framework.grids (module)
- galaxy.webapps.tool_shed (module)
- galaxy.webapps.tool_shed.api (module)
- galaxy.webapps.tool_shed.api.authenticate (module), [1]
- galaxy.webapps.tool_shed.api.categories (module), [1]
- galaxy.webapps.tool_shed.api.configuration (module), [1]
- galaxy.webapps.tool_shed.api.groups (module), [1]
- galaxy.webapps.tool_shed.api.repositories (module), [1]
- galaxy.webapps.tool_shed.api.repository_revisions (module), [1]
- galaxy.webapps.tool_shed.api.tools (module), [1]
- galaxy.webapps.tool_shed.api.users (module), [1]
- galaxy.webapps.tool_shed.app (module)
- galaxy.webapps.tool_shed.buildapp (module)
- galaxy.webapps.tool_shed.config (module)
- galaxy.webapps.tool_shed.controllers (module)
- galaxy.webapps.tool_shed.controllers.admin (module)
- galaxy.webapps.tool_shed.controllers.groups (module)
- galaxy.webapps.tool_shed.controllers.hg (module)
- galaxy.webapps.tool_shed.controllers.repository (module)
- galaxy.webapps.tool_shed.controllers.repository_review (module)
- galaxy.webapps.tool_shed.controllers.upload (module)
- galaxy.webapps.tool_shed.controllers.user (module)
- galaxy.webapps.tool_shed.framework (module)
- galaxy.webapps.tool_shed.framework.middleware (module)
- galaxy.webapps.tool_shed.framework.middleware.remoteuser (module)
- galaxy.webapps.tool_shed.model (module)
- galaxy.webapps.tool_shed.model.mapping (module)
- galaxy.webapps.tool_shed.model.migrate (module)
- galaxy.webapps.tool_shed.model.migrate.check (module)
- galaxy.webapps.tool_shed.search (module)
- galaxy.webapps.tool_shed.search.repo_search (module)
- galaxy.webapps.tool_shed.search.tool_search (module)
- galaxy.webapps.tool_shed.security (module)
- galaxy.webapps.tool_shed.util (module)
- galaxy.webapps.tool_shed.util.hgweb_config (module)
- galaxy.webapps.tool_shed.util.ratings_util (module)
- galaxy.webapps.tool_shed.util.shed_statistics (module)
- galaxy.webapps.util (module)
- galaxy.webhooks (module)
- galaxy.work (module)
- galaxy.work.context (module)
- galaxy.workflow (module)
- galaxy.workflow.extract (module)
- galaxy.workflow.modules (module)
- galaxy.workflow.render (module)
- galaxy.workflow.resources (module)
- galaxy.workflow.run (module)
- galaxy.workflow.run_request (module)
- galaxy.workflow.schedulers (module)
- galaxy.workflow.schedulers.core (module)
- galaxy.workflow.scheduling_manager (module)
- galaxy.workflow.steps (module)
- galaxy_directory() (in module galaxy.util)
- galaxy_ext (module)
- galaxy_ext.metadata (module)
- galaxy_ext.metadata.set_metadata (module)
- galaxy_lib_dir (galaxy.jobs.JobWrapper attribute)
- galaxy_param_type (galaxy.tools.cwl.representation.TypeRepresentation attribute)
- galaxy_sessions (galaxy.webapps.tool_shed.model.User attribute)
- galaxy_system_pwent (galaxy.jobs.JobWrapper attribute)
- galaxy_virtual_env (galaxy.jobs.JobWrapper attribute)
- GalaxyConfigBuilder (class in galaxy.main)
- GalaxyInteractorApi (class in galaxy.tools.verify.interactor)
- GalaxyLargeBinary (class in galaxy.model.custom_types)
- GalaxyOutput (class in galaxy.tools.cwl.util)
- GalaxyPackageDependency (class in galaxy.tools.deps.resolvers.galaxy_packages)
- GalaxyPackageDependencyResolver (class in galaxy.tools.deps.resolvers.galaxy_packages)
- GalaxyParseError
- GalaxyQuery (class in galaxy.model.search)
- GalaxyQueryAnd (class in galaxy.model.search)
- GalaxyQueryComparison (class in galaxy.model.search)
- GalaxyQueueWorker (class in galaxy.queue_worker)
- GalaxyRBACAgent (class in galaxy.security)
- GalaxySearchEngine (class in galaxy.model.search)
- GalaxySession (class in galaxy.model)
- GalaxySessionToHistoryAssociation (class in galaxy.model)
- GalaxyTagManager (class in galaxy.managers.tags)
- GalaxyUtilityContainerManager (class in tool_shed.galaxy_install.utility_containers)
- GalaxyWebApplication (class in galaxy.webapps.galaxy.buildapp)
- GalaxyWebTransaction (class in galaxy.web.framework.webapp)
- gbrowse_links() (galaxy.datatypes.interval.Gff method)
- GeminiSQLite (class in galaxy.datatypes.binary)
- gen_edge_dicts() (galaxy.util.simplegraph.SimpleGraph method)
- gen_image() (galaxy.webapps.galaxy.controllers.workflow.WorkflowController method)
- gen_node_dicts() (galaxy.util.simplegraph.SimpleGraph method)
- Genbank (class in galaxy.datatypes.sequence)
- generate_clone_url_for_installed_repository() (in module tool_shed.util.common_util)
- generate_clone_url_for_repository_in_tool_shed() (in module tool_shed.util.common_util)
- generate_clone_url_from_repo_info_tup() (in module tool_shed.util.common_util)
- generate_data_manager_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_datatypes_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_deprecated_repository_img_str() (in module tool_shed.galaxy_install.grids.admin_toolshed_grids)
- generate_elements() (galaxy.dataset_collections.types.DatasetCollectionType method)
- generate_environment_dependency_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_error() (galaxy.webapps.galaxy.controllers.root.RootController method)
- generate_export_elem() (tool_shed.capsule.capsule_manager.ExportRepositoryManager method)
- generate_guid_for_object() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_hex() (galaxy.visualization.plugins.interactive_environments.InteractiveEnvironmentRequest method)
- generate_includes_workflows_img_str() (in module tool_shed.galaxy_install.grids.admin_toolshed_grids)
- generate_json_error() (galaxy.webapps.galaxy.controllers.root.RootController method)
- generate_latest_revision_img_str() (in module tool_shed.galaxy_install.grids.admin_toolshed_grids)
- generate_message_for_invalid_repository_dependencies() (tool_shed.galaxy_install.dependency_display.DependencyDisplayer method)
- generate_message_for_invalid_tool_dependencies() (tool_shed.galaxy_install.dependency_display.DependencyDisplayer method)
- generate_message_for_invalid_tools() (in module tool_shed.util.tool_util)
- generate_message_for_orphan_tool_dependencies() (tool_shed.galaxy_install.dependency_display.DependencyDisplayer method)
- generate_message_for_repository_type_change() (in module tool_shed.repository_types.util)
- generate_metadata_for_changeset_revision() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_package_dependency_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_password() (galaxy.visualization.plugins.interactive_environments.InteractiveEnvironmentRequest method)
- generate_primary_file() (galaxy.datatypes.assembly.Velvet method)
- generate_process_statistics() (in module galaxy.jobs.metrics.collectl.processes)
- generate_repository_archive() (tool_shed.capsule.capsule_manager.ExportRepositoryManager method)
- generate_repository_archive_filename() (tool_shed.capsule.capsule_manager.ExportRepositoryManager method)
- generate_repository_dependencies_folder_label_from_key() (tool_shed.utility_containers.utility_container_manager.UtilityContainerManager method)
- generate_repository_dependencies_key_for_repository() (in module tool_shed.util.container_util)
- generate_repository_dependency_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_repository_info_elem() (tool_shed.tools.data_table_manager.ShedToolDataTableManager method)
- generate_repository_info_elem_from_repository() (tool_shed.tools.data_table_manager.ShedToolDataTableManager method)
- generate_revision_updates_img_str() (in module tool_shed.galaxy_install.grids.admin_toolshed_grids)
- generate_revision_upgrades_img_str() (in module tool_shed.galaxy_install.grids.admin_toolshed_grids)
- generate_sharable_link_for_repository_in_tool_shed() (in module tool_shed.util.repository_util)
- generate_statistics() (galaxy.webapps.tool_shed.util.shed_statistics.ShedCounter method)
- generate_tool_dependencies_key() (tool_shed.utility_containers.ToolShedUtilityContainerManager method)
- generate_tool_dependency_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_tool_elem() (tool_shed.galaxy_install.tools.tool_panel_manager.ToolPanelManager method)
- generate_tool_guid() (in module tool_shed.util.shed_util_common)
- generate_tool_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generate_tool_panel_dict_for_new_install() (tool_shed.galaxy_install.tools.tool_panel_manager.ToolPanelManager method)
- generate_tool_panel_dict_for_tool_config() (tool_shed.galaxy_install.tools.tool_panel_manager.ToolPanelManager method)
- generate_tool_panel_dict_from_shed_tool_conf_entries() (tool_shed.galaxy_install.tools.tool_panel_manager.ToolPanelManager method)
- generate_tool_panel_elem_list() (tool_shed.galaxy_install.tools.tool_panel_manager.ToolPanelManager method)
- generate_tool_section_dicts() (tool_shed.galaxy_install.tools.tool_panel_manager.ToolPanelManager method)
- generate_tool_section_element_from_dict() (tool_shed.galaxy_install.tools.tool_panel_manager.ToolPanelManager method)
- generate_tool_shed_repository_install_dir() (in module tool_shed.util.repository_util)
- generate_unknown_img_str() (in module tool_shed.galaxy_install.grids.admin_toolshed_grids)
- generate_workflow_image() (galaxy.webapps.galaxy.controllers.admin_toolshed.AdminToolshed method)
- generate_workflow_metadata() (tool_shed.metadata.metadata_generator.MetadataGenerator method)
- generateJsonableDict() (galaxy.visualization.data_providers.phyloviz.baseparser.PhyloTree method)
- GenericAsn1 (class in galaxy.datatypes.data)
- GenericAsn1Binary (class in galaxy.datatypes.binary)
- GenericMolFile (class in galaxy.datatypes.molecules)
- GenericXml (class in galaxy.datatypes.xml)
- GeneTrack (class in galaxy.datatypes.tracks)
- Genome (class in galaxy.visualization.genomes)
- genome_build() (galaxy.managers.base.ModelValidator method)
- GenomeBuildParameter (class in galaxy.tools.parameters.basic)
- GenomeBuilds (class in galaxy.util.dbkeys)
- GenomeDataProvider (class in galaxy.visualization.data_providers.genome)
- GenomeGraphs (class in galaxy.datatypes.genetics)
- GenomeIndexToolData (class in galaxy.model)
- GenomeRegion (class in galaxy.visualization.genomes)
- Genomes (class in galaxy.visualization.genomes)
- GenomesController (class in galaxy.webapps.galaxy.api.genomes), [1]
- GenomespaceFileToolParameter (class in galaxy.tools.parameters.basic)
- genomic_region_dataprovider() (galaxy.datatypes.binary.Bam method)
- genomic_region_dict_dataprovider() (galaxy.datatypes.binary.Bam method)
- GenomicRegionAlignment (class in galaxy.tools.util.maf_utilities)
- GenomicRegionDataProvider (class in galaxy.datatypes.dataproviders.dataset)
- GenotypeMatrix (class in galaxy.datatypes.genetics)
- get() (galaxy.config.Configuration method)
- get_absolute_path_to_file_in_repository() (in module tool_shed.util.repository_util)
- get_accepted_filters() (galaxy.web.framework.helpers.grids.DeletedColumn method)
- get_access_roles() (galaxy.managers.libraries.LibraryManager method)
- get_accessible() (galaxy.managers.secured.AccessibleManagerMixin method)
- get_accessible_libraries() (galaxy.security.GalaxyRBACAgent method)
- get_action() (galaxy.security.RBACAgent method)
- get_actions() (galaxy.security.RBACAgent method)
- get_actions_for_items() (galaxy.security.GalaxyRBACAgent method)
- get_activation_token() (galaxy.webapps.galaxy.api.users.UserAPIController method), [1]
- get_active_folders() (galaxy.model.Library method)
- get_add_roles() (galaxy.managers.libraries.LibraryManager method)
- get_additional_repository_information() (galaxy.tools.deps.mulled.mulled_search.QuaySearch method)
- get_all_dependencies() (in module tool_shed.util.metadata_util)
- get_all_forms() (galaxy.web.base.controller.UsesFormDefinitionsMixin method)
- get_all_roles() (galaxy.security.GalaxyRBACAgent method)
- get_all_users() (galaxy.webapps.galaxy.controllers.userskeys.User method)
- get_amount() (galaxy.model.Quota method)
- get_annotation_async() (galaxy.webapps.galaxy.controllers.dataset.DatasetInterface method)
- get_api_key() (galaxy.webapps.galaxy.api.authenticate.AuthenticationController method), [1]
- get_app_kwds() (galaxy.web.stack.ApplicationStack class method)
- get_app_option() (galaxy.tools.deps.DependencyManager method)
- get_archives_from_manifest() (tool_shed.capsule.capsule_manager.ImportRepositoryManager method)
- get_attributes_from_fasta_header() (in module galaxy.tools.util.maf_utilities)
- get_authenticators() (in module galaxy.auth.util)
- get_available_tracks() (galaxy.datatypes.registry.Registry method)
- get_ave_item_rating_data() (galaxy.model.item_attrs.UsesItemRatings method)
- get_base_dir() (galaxy.tools.data.TabularToolDataField method)
- get_base_path() (galaxy.tools.data.TabularToolDataField method)
- get_bibtex() (galaxy.managers.citations.DoiCache method)
- get_biostar_url() (in module galaxy.util.biostar)
- get_blurb() (galaxy.datatypes.constructive_solid_geometry.Vtk method)
- get_bool() (galaxy.config.Configuration method)
- get_bounds() (in module galaxy.visualization.data_providers.genome)
- get_build() (galaxy.visualization.genomes.Genomes method)
- get_categories() (in module tool_shed.util.shed_util_common)
- get_category() (in module tool_shed.util.shed_util_common)
- get_category_by_name() (in module tool_shed.util.shed_util_common)
- get_certified_level_one_clause_list() (tool_shed.repository_registry.Registry method)
- get_certified_level_one_tuple() (tool_shed.repository_registry.Registry method)
- get_change_lines_in_file_for_tag() (in module tool_shed.util.commit_util)
- get_changectx_for_changeset() (in module tool_shed.util.hg_util)
- get_changeset_revision_and_ctx_rev() (galaxy.webapps.tool_shed.controllers.repository.RepositoryController method)
- get_changesets_for_setting_metadata() (galaxy.webapps.tool_shed.model.Repository method)
- get_charset_from_http_headers() (in module galaxy.util)
- get_check_interval() (galaxy.model.DeferredJob method)
- get_children() (galaxy.datatypes.dataproviders.hierarchy.XMLDataProvider method)
- get_chopped_blocks_for_region() (in module galaxy.tools.util.maf_utilities)
- get_chopped_blocks_with_index_offset_for_region() (in module galaxy.tools.util.maf_utilities)
- get_chrom_info() (galaxy.tools.actions.ToolExecutionCache method)
- get_chunk() (galaxy.datatypes.binary.BamNative method)
- get_class() (galaxy.web.base.controller.BaseController method)
- get_class_by_label() (tool_shed.repository_types.registry.Registry method)
- get_cli_plugins() (galaxy.jobs.runners.cli.ShellJobRunner method)
- get_code() (galaxy.model.PSACode class method)
- get_column_list() (galaxy.tools.parameters.basic.ColumnListParameter method)
- get_column_metadata_from_dataset() (galaxy.datatypes.dataproviders.dataset.DatasetDataProvider class method)
- get_column_name_list() (galaxy.tools.data.TabularToolDataTable method)
- get_column_type() (galaxy.datatypes.dataproviders.column.ColumnarDataProvider method)
- get_command() (in module galaxy.tools.linters.command)
- get_command_line() (galaxy.jobs.JobWrapper method)
- get_communication() (galaxy.webapps.galaxy.api.users.UserAPIController method), [1]
- get_community_tags() (galaxy.managers.tags.TagManager method)
- get_component() (in module tool_shed.util.review_util)
- get_component_associations() (galaxy.security.GalaxyRBACAgent method)
- get_component_by_name() (in module tool_shed.util.review_util)
- get_component_review() (in module tool_shed.util.review_util)
- get_component_review_by_repository_review_id_component_id() (in module tool_shed.util.review_util)
- get_components() (in module tool_shed.util.review_util)
- get_components_by_src() (in module galaxy.tools.util.maf_utilities)
- get_components_by_src_start() (in module galaxy.tools.util.maf_utilities)
- get_components_from_key() (in module tool_shed.util.container_util)
- get_components_from_repo_info_dict() (tool_shed.capsule.capsule_manager.ExportRepositoryManager method)
- get_components_from_repository_dependency_for_installed_repository() (tool_shed.utility_containers.utility_container_manager.UtilityContainerManager method)
- get_composite_dataset_name() (galaxy.tools.parameters.grouping.UploadDataset method)
- get_composite_extensions() (galaxy.datatypes.registry.Registry method)
- get_composite_files() (galaxy.datatypes.data.Data method)
- get_conditional_requirements() (galaxy.dependencies.ConditionalDependencies method)
- get_conf_dict() (galaxy.visualization.plugins.interactive_environments.InteractiveEnvironmentRequest method)
- get_config() (in module galaxy.model.orm.scripts)
- get_config_dict() (galaxy.webapps.galaxy.api.configuration.ConfigurationController method), [1]
- get_config_form() (galaxy.workflow.modules.ToolModule method)
- get_config_from_disk() (in module tool_shed.util.hg_util)
- get_consumer() (galaxy.web.framework.openid_manager.OpenIDManager method)
- get_consumers() (galaxy.queue_worker.GalaxyQueueWorker method)
- get_container() (galaxy.containers.ContainerInterface method)
- get_container_host() (galaxy.visualization.plugins.interactive_environments.InteractiveEnvironmentRequest method)
- get_container_port_mapping() (galaxy.visualization.plugins.interactive_environments.InteractiveEnvironmentRequest method)
- get_containing_repository_for_tool_dependency() (tool_shed.galaxy_install.installed_repository_manager.InstalledRepositoryManager method)
- get_containing_tool_sections() (tool_shed.galaxy_install.tool_migration_manager.ToolMigrationManager method)
- get_content_id() (galaxy.workflow.modules.SubWorkflowModule method)
- get_content_type() (galaxy.web.framework.base.Response method)
- get_converted_dataset() (galaxy.model.DatasetInstance method)
- get_converted_dataset_deps() (galaxy.model.DatasetInstance method)
- get_converted_files_by_type() (galaxy.model.DatasetInstance method)
- get_converter_and_display_paths() (tool_shed.galaxy_install.datatypes.custom_datatype_manager.CustomDatatypeLoader method)
- get_converter_by_target_type() (galaxy.datatypes.registry.Registry method)
- get_converter_types() (galaxy.datatypes.data.Data method)
- get_converters_by_datatype() (galaxy.datatypes.registry.Registry method)
- get_cookie() (galaxy.web.framework.webapp.GalaxyWebTransaction method)
- get_copied_from_job_id() (galaxy.model.Job method)
- get_cram_version() (galaxy.datatypes.binary.CRAM method)
- get_ctx_file_path_from_manifest() (in module tool_shed.util.hg_util)
- get_ctx_rev() (galaxy.webapps.tool_shed.controllers.repository.RepositoryController method)
- get_current() (galaxy.managers.histories.HistoryManager method)
- get_current_case() (galaxy.tools.parameters.grouping.Conditional method)
- get_current_form() (galaxy.webapps.galaxy.controllers.forms.Forms method)
- get_current_item() (galaxy.web.framework.helpers.grids.Grid method)
- get_current_repository_metadata_for_changeset_revision() (in module tool_shed.util.metadata_util)
- get_current_roles() (galaxy.managers.folders.FolderManager method)
- get_current_thread_object_dict() (in module galaxy.util.heartbeat)
- get_current_user_roles() (galaxy.managers.context.ProvidesUserContext method)
- get_custom_builds() (galaxy.webapps.galaxy.api.users.UserAPIController method), [1]
- get_custom_builds_metadata() (galaxy.webapps.galaxy.api.histories.HistoriesController method), [1]
- get_data() (galaxy.objectstore.azure_blob.AzureBlobObjectStore method)
- get_data_inputs() (galaxy.workflow.modules.InputModule method)
- get_data_outputs() (galaxy.workflow.modules.InputDataCollectionModule method)
- get_data_provider() (galaxy.visualization.data_providers.registry.DataProviderRegistry method)
- get_database_engine_options() (in module galaxy.config)
- get_database_url() (in module galaxy.config)
- get_dataset_collection() (galaxy.managers.collections.DatasetCollectionManager method)
- get_dataset_collection_instance() (galaxy.managers.collections.DatasetCollectionManager method)
- get_dataset_filename() (in module galaxy.tools.imp_exp.export_history)
- get_dataset_finish_context() (galaxy.jobs.JobWrapper method)
- get_dataset_matcher_factory() (in module galaxy.tools.parameters.dataset_matcher)
- get_dataset_metadata_key() (galaxy.datatypes.metadata.JobExternalOutputMetadataWrapper method)
- get_dataset_state() (galaxy.model.DatasetInstance method)
- get_datasets_for_group() (galaxy.tools.wrappers.DatasetCollectionWrapper method)
- get_datasources() (galaxy.model.DatasetInstance method)
- get_datatype() (galaxy.tools.parameters.grouping.UploadDataset method)
- get_datatype_by_extension() (galaxy.datatypes.registry.Registry method)
- get_datatype_class_by_name() (galaxy.datatypes.registry.Registry method)
- get_datatype_ext() (galaxy.tools.parameters.grouping.UploadDataset method)
- get_dbkey() (galaxy.model.DatasetInstance method)
- get_dbkeys() (galaxy.visualization.genomes.Genomes method)
- get_default_history_by_trans() (galaxy.tools.DataManagerTool method)
- get_default_max_vals() (galaxy.visualization.data_providers.genome.ChromatinInteractionsDataProvider method)
- get_default_parsers() (galaxy.datatypes.dataproviders.column.ColumnarDataProvider method)
- get_dependencies() (galaxy.model.Job method)
- get_dependencies_for_metadata_revision() (in module tool_shed.util.metadata_util)
- get_dependencies_for_repository() (tool_shed.galaxy_install.installed_repository_manager.InstalledRepositoryManager method)
- get_dependency_name() (galaxy.tools.parameters.dynamic_options.DataMetaFilter method)
- get_dependency_names() (galaxy.tools.parameters.dynamic_options.DynamicOptions method)
- get_dependent_downloadable_revisions() (tool_shed.capsule.capsule_manager.ImportRepositoryManager method)
- get_destination() (galaxy.jobs.JobConfiguration method)
- get_destination_configuration() (galaxy.jobs.JobWrapper method)
- get_destination_list_from_job_config() (in module galaxy.jobs.dynamic_tool_destination)
- get_destinations() (galaxy.jobs.JobConfiguration method)
- get_dict_checksums() (tool_shed.galaxy_install.tool_dependencies.recipe.step_handler.Download method)
- get_disk_usage() (galaxy.model.GalaxySession method)
- get_display_application() (galaxy.datatypes.data.Data method)
- get_display_applications() (galaxy.model.DatasetInstance method)
- get_display_applications_by_dataset() (galaxy.datatypes.data.Data method)
- get_display_label() (galaxy.datatypes.data.Data method)
- get_display_links() (galaxy.datatypes.data.Data method)
- get_display_name() (galaxy.model.HasName method)
- get_display_sites() (galaxy.datatypes.registry.Registry method)
- get_display_text() (galaxy.tools.wrappers.ToolParameterValueWrapper method)
- get_display_types() (galaxy.datatypes.data.Data method)
- get_display_url() (galaxy.datatypes.display_applications.application.DisplayApplicationLink method)
- get_download_url_for_platform() (in module tool_shed.util.tool_dependency_util)
- get_edit() (galaxy.webapps.galaxy.controllers.dataset.DatasetInterface method)
- get_edit_distance() (in module galaxy.jobs.dynamic_tool_destination)
- get_editor_iframe() (galaxy.webapps.galaxy.controllers.page.PageController method)
- get_elem_checksums() (tool_shed.galaxy_install.tool_dependencies.recipe.step_handler.Download method)
- get_elements() (galaxy.util.topsort.CycleError method)
- get_embed_html_async() (galaxy.webapps.galaxy.controllers.dataset.DatasetInterface method)
- get_empty_field_by_name() (galaxy.tools.data.ToolDataTable method)
- get_entries() (galaxy.tools.data.TabularToolDataTable method)
- get_entry() (galaxy.tools.data.TabularToolDataTable method)
- get_env_setup_clause() (galaxy.jobs.JobWrapper method)
- get_env_shell_file_path() (galaxy.model.tool_shed_install.ToolDependency method)
- get_env_shell_file_paths() (tool_shed.galaxy_install.tool_dependencies.env_manager.EnvManager method)
- get_env_shell_file_paths_from_setup_environment_elem() (tool_shed.galaxy_install.tool_dependencies.env_manager.EnvManager method)
- get_env_var_values() (in module tool_shed.util.basic_util)
- get_errors() (galaxy.workflow.modules.SubWorkflowModule method)
- get_estimated_display_viewport() (galaxy.datatypes.interval.BedGraph method)
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