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galaxy.model.tool_shed_install.migrate.versions package

Submodules

galaxy.model.tool_shed_install.migrate.versions.0001_add_tool_shed_repository_table module

Migration script to add the tool_shed_repository table.

galaxy.model.tool_shed_install.migrate.versions.0001_add_tool_shed_repository_table.now()

Return a new datetime representing UTC day and time.

galaxy.model.tool_shed_install.migrate.versions.0001_add_tool_shed_repository_table.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0001_add_tool_shed_repository_table.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0002_add_tool_shed_repository_table_columns module

Migration script to add the metadata, update_available and includes_datatypes columns to the tool_shed_repository table.

galaxy.model.tool_shed_install.migrate.versions.0002_add_tool_shed_repository_table_columns.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0002_add_tool_shed_repository_table_columns.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0003_tool_id_guid_map_table module

Migration script to create the tool_id_guid_map table.

galaxy.model.tool_shed_install.migrate.versions.0003_tool_id_guid_map_table.now()

Return a new datetime representing UTC day and time.

galaxy.model.tool_shed_install.migrate.versions.0003_tool_id_guid_map_table.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0003_tool_id_guid_map_table.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0004_add_installed_changeset_revison_column module

Migration script to add the installed_changeset_revision column to the tool_shed_repository table.

galaxy.model.tool_shed_install.migrate.versions.0004_add_installed_changeset_revison_column.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0004_add_installed_changeset_revison_column.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0005_add_tool_shed_repository_table_columns module

Migration script to add the uninstalled and dist_to_shed columns to the tool_shed_repository table.

galaxy.model.tool_shed_install.migrate.versions.0005_add_tool_shed_repository_table_columns.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0005_add_tool_shed_repository_table_columns.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0006_add_tool_version_tables module

Migration script to create the tool_version and tool_version_association tables and drop the tool_id_guid_map table.

galaxy.model.tool_shed_install.migrate.versions.0006_add_tool_version_tables.now()

Return a new datetime representing UTC day and time.

galaxy.model.tool_shed_install.migrate.versions.0006_add_tool_version_tables.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0006_add_tool_version_tables.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0007_add_migrate_tools_table module

Migration script to create the migrate_tools table.

galaxy.model.tool_shed_install.migrate.versions.0007_add_migrate_tools_table.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0007_add_migrate_tools_table.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0008_add_ctx_rev_column module

Migration script to add the ctx_rev column to the tool_shed_repository table.

galaxy.model.tool_shed_install.migrate.versions.0008_add_ctx_rev_column.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0008_add_ctx_rev_column.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0009_add_tool_dependency_table module

Migration script to add the tool_dependency table.

galaxy.model.tool_shed_install.migrate.versions.0009_add_tool_dependency_table.now()

Return a new datetime representing UTC day and time.

galaxy.model.tool_shed_install.migrate.versions.0009_add_tool_dependency_table.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0009_add_tool_dependency_table.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0010_alter_tool_dependency_table_version_column module

Migration script to alter the type of the tool_dependency.version column from TrimmedString(40) to Text.

galaxy.model.tool_shed_install.migrate.versions.0010_alter_tool_dependency_table_version_column.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0010_alter_tool_dependency_table_version_column.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0011_drop_installed_changeset_revision_column module

Migration script to drop the installed_changeset_revision column from the tool_dependency table.

galaxy.model.tool_shed_install.migrate.versions.0011_drop_installed_changeset_revision_column.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0011_drop_installed_changeset_revision_column.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0012_add_tool_dependency_status_columns module

Migration script to add status and error_message columns to the tool_dependency table and drop the uninstalled column from the tool_dependency table.

galaxy.model.tool_shed_install.migrate.versions.0012_add_tool_dependency_status_columns.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0012_add_tool_dependency_status_columns.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0013_add_tool_shed_repository_status_columns module

Migration script to add status and error_message columns to the tool_shed_repository table.

galaxy.model.tool_shed_install.migrate.versions.0013_add_tool_shed_repository_status_columns.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0013_add_tool_shed_repository_status_columns.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0014_add_repository_dependency_tables module

Migration script to add the repository_dependency and repository_repository_dependency_association tables.

galaxy.model.tool_shed_install.migrate.versions.0014_add_repository_dependency_tables.now()

Return a new datetime representing UTC day and time.

galaxy.model.tool_shed_install.migrate.versions.0014_add_repository_dependency_tables.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0014_add_repository_dependency_tables.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0015_update_migrate_tools_table module

Migration script to update the migrate_tools.repository_path column to point to the new location lib/tool_shed/galaxy_install/migrate.

galaxy.model.tool_shed_install.migrate.versions.0015_update_migrate_tools_table.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0015_update_migrate_tools_table.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0016_update_migrate_tools_table_again module

Migration script to update the migrate_tools.repository_path column to point to the new location lib/tool_shed/galaxy_install/migrate.

galaxy.model.tool_shed_install.migrate.versions.0016_update_migrate_tools_table_again.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0016_update_migrate_tools_table_again.downgrade(migrate_engine)[source]

galaxy.model.tool_shed_install.migrate.versions.0017_drop_update_available_col_add_tool_shed_status_col module

Migration script to drop the update_available Boolean column and replace it with the tool_shed_status JSONType column in the tool_shed_repository table.

galaxy.model.tool_shed_install.migrate.versions.0017_drop_update_available_col_add_tool_shed_status_col.upgrade(migrate_engine)[source]
galaxy.model.tool_shed_install.migrate.versions.0017_drop_update_available_col_add_tool_shed_status_col.downgrade(migrate_engine)[source]